Wall clock time and date at job start Tue Mar 31 2020 10:37:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.46884 * 2 1 4 4 C 1.50694 * 109.47414 * 239.99811 * 2 1 3 5 5 H 1.08005 * 119.99943 * 239.99833 * 4 2 1 6 6 C 1.37879 * 119.99893 * 59.99717 * 4 2 1 7 7 N 1.31506 * 120.00122 * 0.02562 * 6 4 2 8 8 Si 1.86807 * 119.99802 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.47259 * 60.00099 * 8 6 4 10 10 H 1.48494 * 109.46890 * 180.02562 * 8 6 4 11 11 H 1.48503 * 109.46673 * 299.99727 * 8 6 4 12 12 C 1.53000 * 109.47237 * 119.99468 * 2 1 3 13 13 N 1.46495 * 109.47349 * 300.00357 * 12 2 1 14 14 C 1.34776 * 120.00145 * 179.97438 * 13 12 2 15 15 O 1.21281 * 120.00283 * 0.02562 * 14 13 12 16 16 C 1.50704 * 120.00111 * 180.02562 * 14 13 12 17 17 H 1.08995 * 109.47263 * 54.99631 * 16 14 13 18 18 O 1.42891 * 109.47377 * 175.00476 * 16 14 13 19 19 C 1.50706 * 109.46838 * 295.00219 * 16 14 13 20 20 C 1.38244 * 119.98773 * 99.99937 * 19 16 14 21 21 C 1.38217 * 120.01084 * 180.02562 * 20 19 16 22 22 C 1.38351 * 119.98541 * 0.25893 * 21 20 19 23 23 Cl 1.73604 * 120.00786 * 179.69323 * 22 21 20 24 24 C 1.38349 * 119.97465 * 359.42086 * 22 21 20 25 25 C 1.38212 * 119.98525 * 0.59771 * 24 22 21 26 26 H 1.08996 * 109.47712 * 300.00106 * 1 2 3 27 27 H 1.09001 * 109.47511 * 60.00484 * 1 2 3 28 28 H 1.09001 * 109.46945 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46868 * 180.02562 * 3 2 1 30 30 H 1.09005 * 109.47029 * 299.99409 * 3 2 1 31 31 H 1.08998 * 109.47451 * 59.99798 * 3 2 1 32 32 H 0.97004 * 120.00189 * 180.02562 * 7 6 4 33 33 H 1.08998 * 109.47315 * 180.02562 * 12 2 1 34 34 H 1.09001 * 109.46879 * 60.00295 * 12 2 1 35 35 H 0.97006 * 119.99869 * 0.02562 * 13 12 2 36 36 H 0.96699 * 114.00474 * 59.99027 * 18 16 14 37 37 H 1.07999 * 119.99331 * 0.02562 * 20 19 16 38 38 H 1.08002 * 120.00169 * 179.97438 * 21 20 19 39 39 H 1.08008 * 120.00633 * 180.29755 * 24 22 21 40 40 H 1.08001 * 119.99190 * 179.72131 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 2.0324 -0.7104 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6992 -0.2394 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3215 -1.1205 -4.0079 9 1 1.8260 -2.5204 -4.0076 10 1 1.8270 -0.4201 -5.2203 11 1 3.8065 -1.1209 -4.0080 12 6 2.0400 -0.7211 1.2493 13 7 1.5517 -0.0305 2.4454 14 6 1.8768 -0.4912 3.6695 15 8 2.5742 -1.4772 3.7809 16 6 1.3740 0.2189 4.9000 17 1 0.2877 0.2971 4.8560 18 8 1.7517 -0.5192 6.0638 19 6 1.9747 1.5996 4.9639 20 6 1.2368 2.6939 4.5529 21 6 1.7874 3.9603 4.6108 22 6 3.0793 4.1320 5.0751 23 17 3.7744 5.7215 5.1406 24 6 3.8150 3.0372 5.4925 25 6 3.2634 1.7713 5.4338 26 1 -0.3634 0.5138 0.8899 27 1 -0.3634 0.5137 -0.8900 28 1 -0.3633 -1.0277 0.0005 29 1 3.1299 1.4425 -0.0005 30 1 1.6766 1.9563 -0.8901 31 1 1.6766 1.9564 0.8899 32 1 0.7089 1.1612 -3.4845 33 1 3.1300 -0.7207 1.2495 34 1 1.6767 -1.7488 1.2493 35 1 0.9936 0.7579 2.3564 36 1 2.7069 -0.6282 6.1675 37 1 0.2298 2.5593 4.1865 38 1 1.2109 4.8151 4.2892 39 1 4.8219 3.1712 5.8597 40 1 3.8392 0.9160 5.7554 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000837892882.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:16 Heat of formation + Delta-G solvation = -96.208973 kcal Electronic energy + Delta-G solvation = -23708.954756 eV Core-core repulsion = 20127.364688 eV Total energy + Delta-G solvation = -3581.590068 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.51612 -40.01612 -38.40675 -37.61616 -37.00309 -35.08114 -33.09385 -32.20258 -32.00138 -28.54019 -27.55344 -27.34868 -26.15438 -23.91499 -23.07224 -21.61047 -20.63630 -19.22308 -18.71115 -17.78442 -17.41765 -17.20399 -16.62594 -16.38329 -16.06160 -15.65811 -15.13141 -14.99487 -14.71131 -14.59215 -14.44228 -14.27482 -14.02210 -13.56476 -13.20128 -13.09580 -12.96440 -12.67426 -12.63183 -12.59297 -12.52550 -12.24666 -12.13135 -11.90743 -11.79446 -11.48203 -11.27389 -10.78381 -10.65484 -10.39180 -10.06006 -9.99473 -9.62597 -8.01908 -6.17438 -0.01487 0.27357 1.11504 1.43969 1.45717 1.51681 1.52839 2.17311 2.46967 2.56452 3.21922 3.35431 3.46717 3.69519 3.80910 3.89847 4.13499 4.30169 4.42098 4.50283 4.53289 4.62447 4.71832 4.92964 4.98630 5.06157 5.10394 5.10807 5.20095 5.20275 5.34172 5.37152 5.56066 5.67750 5.68298 5.72231 6.16446 6.22118 6.37841 6.44002 6.63228 6.86275 7.20027 7.50281 8.96553 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.014299 B = 0.003776 C = 0.003226 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1957.645398 B = 7413.386124 C = 8676.709053 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C 0.052 3.948 3 C -0.118 4.118 4 C -0.531 4.531 5 H 0.043 0.957 6 C 0.031 3.969 7 N -0.897 5.897 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.147 3.853 13 N -0.700 5.700 14 C 0.480 3.520 15 O -0.581 6.581 16 C 0.147 3.853 17 H 0.158 0.842 18 O -0.538 6.538 19 C -0.121 4.121 20 C -0.092 4.092 21 C -0.110 4.110 22 C -0.041 4.041 23 Cl -0.071 7.071 24 C -0.113 4.113 25 C -0.102 4.102 26 H 0.040 0.960 27 H 0.062 0.938 28 H 0.018 0.982 29 H 0.014 0.986 30 H 0.062 0.938 31 H 0.037 0.963 32 H 0.260 0.740 33 H 0.037 0.963 34 H 0.040 0.960 35 H 0.409 0.591 36 H 0.389 0.611 37 H 0.163 0.837 38 H 0.153 0.847 39 H 0.148 0.852 40 H 0.141 0.859 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.117 8.698 16.734 18.860 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.051 3.949 3 C -0.176 4.176 4 C -0.570 4.570 5 H 0.061 0.939 6 C -0.169 4.169 7 N -0.535 5.535 8 Si 0.769 3.231 9 H -0.203 1.203 10 H -0.208 1.208 11 H -0.204 1.204 12 C 0.023 3.977 13 N -0.352 5.352 14 C 0.267 3.733 15 O -0.462 6.462 16 C 0.085 3.915 17 H 0.175 0.825 18 O -0.345 6.345 19 C -0.122 4.122 20 C -0.110 4.110 21 C -0.129 4.129 22 C -0.067 4.067 23 Cl -0.042 7.042 24 C -0.131 4.131 25 C -0.120 4.120 26 H 0.059 0.941 27 H 0.081 0.919 28 H 0.037 0.963 29 H 0.033 0.967 30 H 0.081 0.919 31 H 0.056 0.944 32 H 0.070 0.930 33 H 0.056 0.944 34 H 0.058 0.942 35 H 0.247 0.753 36 H 0.240 0.760 37 H 0.181 0.819 38 H 0.171 0.829 39 H 0.165 0.835 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -0.043 8.237 16.757 18.673 hybrid contribution 1.008 -0.116 -1.351 1.690 sum 0.964 8.121 15.406 17.442 Atomic orbital electron populations 1.21672 0.96908 0.98738 1.00552 1.18346 0.93389 0.92957 0.90175 1.21646 0.97685 0.97836 1.00411 1.21246 1.31842 1.12218 0.91657 0.93866 1.25402 0.95122 0.95554 1.00810 1.69884 1.36855 1.23156 1.23645 0.85875 0.78591 0.78886 0.79796 1.20289 1.20815 1.20403 1.21293 0.96978 0.95157 0.84280 1.46102 1.52308 1.31581 1.05228 1.21948 0.80452 0.84694 0.86245 1.90681 1.40084 1.28216 1.87194 1.20718 1.01977 0.86223 0.82612 0.82507 1.86588 1.30592 1.76032 1.41275 1.20332 0.95604 0.94871 1.01378 1.21285 1.01286 0.90600 0.97802 1.21314 0.93558 0.98935 0.99072 1.21191 0.95249 0.86623 1.03656 1.98377 1.84513 1.24286 1.97038 1.21182 1.00956 0.90894 1.00092 1.21060 0.94648 0.97578 0.98713 0.94135 0.91898 0.96298 0.96686 0.91894 0.94377 0.93018 0.94444 0.94200 0.75326 0.75980 0.81941 0.82885 0.83456 0.84177 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.12 8.08 71.98 0.58 -4.54 16 2 C 0.05 2.32 0.50 -52.93 -0.03 2.29 16 3 C -0.12 -5.06 8.08 71.98 0.58 -4.48 16 4 C -0.53 -27.57 8.01 25.60 0.21 -27.36 16 5 H 0.04 2.30 7.74 -2.91 -0.02 2.27 16 6 C 0.03 1.61 5.15 84.66 0.44 2.05 16 7 N -0.90 -46.81 9.35 21.45 0.20 -46.61 16 8 Si 0.94 42.03 29.54 68.60 2.03 44.05 16 9 H -0.28 -12.31 7.11 99.48 0.71 -11.60 16 10 H -0.28 -12.33 7.11 99.48 0.71 -11.63 16 11 H -0.28 -12.39 7.11 99.48 0.71 -11.69 16 12 C 0.15 6.00 4.50 86.38 0.39 6.39 16 13 N -0.70 -22.21 4.91 -463.07 -2.27 -24.48 16 14 C 0.48 14.75 7.15 87.66 0.63 15.38 16 15 O -0.58 -22.66 16.32 15.96 0.26 -22.40 16 16 C 0.15 3.19 3.62 29.10 0.11 3.29 16 17 H 0.16 2.60 8.00 -2.39 -0.02 2.58 16 18 O -0.54 -12.37 12.84 -129.99 -1.67 -14.04 16 19 C -0.12 -2.34 4.92 -19.86 -0.10 -2.44 16 20 C -0.09 -1.52 9.67 22.27 0.22 -1.31 16 21 C -0.11 -1.90 9.83 22.29 0.22 -1.68 16 22 C -0.04 -0.77 6.32 22.32 0.14 -0.63 16 23 Cl -0.07 -1.32 28.96 -2.72 -0.08 -1.39 16 24 C -0.11 -2.09 9.83 22.29 0.22 -1.87 16 25 C -0.10 -1.95 9.31 22.26 0.21 -1.74 16 26 H 0.04 1.39 6.86 -2.39 -0.02 1.37 16 27 H 0.06 2.99 6.07 -2.39 -0.01 2.98 16 28 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 29 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 30 H 0.06 3.02 6.07 -2.38 -0.01 3.01 16 31 H 0.04 1.34 6.86 -2.39 -0.02 1.33 16 32 H 0.26 13.16 8.31 -92.71 -0.77 12.39 16 33 H 0.04 1.65 8.14 -2.39 -0.02 1.63 16 34 H 0.04 1.75 8.14 -2.39 -0.02 1.73 16 35 H 0.41 11.04 6.16 -92.70 -0.57 10.47 16 36 H 0.39 7.50 7.25 -74.06 -0.54 6.96 16 37 H 0.16 1.80 8.04 -2.91 -0.02 1.78 16 38 H 0.15 2.09 8.06 -2.91 -0.02 2.07 16 39 H 0.15 2.24 8.06 -2.91 -0.02 2.22 16 40 H 0.14 2.32 6.78 -2.91 -0.02 2.30 16 Total: -1.00 -62.22 345.06 2.24 -59.98 By element: Atomic # 1 Polarization: 21.57 SS G_CDS: -0.03 Total: 21.54 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 3.80 Total: -16.65 kcal Atomic # 7 Polarization: -69.02 SS G_CDS: -2.07 Total: -71.09 kcal Atomic # 8 Polarization: -35.03 SS G_CDS: -1.41 Total: -36.44 kcal Atomic # 14 Polarization: 42.03 SS G_CDS: 2.03 Total: 44.05 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -0.08 Total: -1.39 kcal Total: -62.22 2.24 -59.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000837892882.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -36.227 kcal (2) G-P(sol) polarization free energy of solvation -62.220 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.237 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.982 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.209 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds