Wall clock time and date at job start Tue Mar 31 2020 09:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29430 * 124.80326 * 2 1 4 4 C 1.30943 * 117.36361 * 180.02562 * 3 2 1 5 5 C 1.35666 * 114.18911 * 0.02562 * 4 3 2 6 6 C 1.46679 * 126.12901 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00109 * 7.80299 * 6 5 4 8 8 N 1.34774 * 120.00056 * 187.80818 * 6 5 4 9 9 C 1.46501 * 119.99992 * 5.39901 * 8 6 5 10 10 C 1.46500 * 120.00125 * 185.39642 * 8 6 5 11 11 H 1.09002 * 110.91449 * 3.90175 * 10 8 6 12 12 C 1.54911 * 111.00244 * 127.79979 * 10 8 6 13 13 N 1.47753 * 104.83867 * 155.16753 * 12 10 8 14 14 C 1.36943 * 125.81834 * 155.82801 * 13 12 10 15 15 H 1.07996 * 120.00368 * 353.39267 * 14 13 12 16 16 C 1.38813 * 119.99598 * 173.38857 * 14 13 12 17 17 N 1.31617 * 120.00065 * 7.52919 * 16 14 13 18 18 Si 1.86798 * 119.99774 * 187.52550 * 16 14 13 19 19 H 1.48504 * 109.46952 * 94.98297 * 18 16 14 20 20 H 1.48496 * 109.47056 * 214.97976 * 18 16 14 21 21 H 1.48501 * 109.47235 * 334.98014 * 18 16 14 22 22 C 1.47016 * 108.53018 * 335.75645 * 13 12 10 23 23 C 1.54319 * 107.40342 * 1.17873 * 22 13 12 24 24 H 1.09008 * 110.71847 * 263.57924 * 23 22 13 25 25 O 1.42901 * 110.72197 * 140.48323 * 23 22 13 26 26 S 1.70953 * 124.80447 * 180.36055 * 2 1 3 27 27 H 1.08998 * 109.47684 * 89.97524 * 1 2 3 28 28 H 1.09004 * 109.47254 * 209.97537 * 1 2 3 29 29 H 1.09003 * 109.46798 * 329.96977 * 1 2 3 30 30 H 1.07994 * 122.90776 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47095 * 275.92856 * 9 8 6 32 32 H 1.08995 * 109.47119 * 35.92955 * 9 8 6 33 33 H 1.08996 * 109.46913 * 155.93275 * 9 8 6 34 34 H 1.09000 * 110.36974 * 273.92277 * 12 10 8 35 35 H 1.08999 * 110.36534 * 36.14160 * 12 10 8 36 36 H 0.96999 * 119.99896 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.87917 * 241.68136 * 22 13 12 38 38 H 1.09006 * 109.88575 * 120.67203 * 22 13 12 39 39 H 0.96692 * 114.00406 * 61.45316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5442 0.8932 -0.0005 5 6 3.9351 -0.4059 -0.0015 6 6 5.3188 -0.8926 -0.0018 7 8 6.2393 -0.1097 0.1421 8 7 5.5708 -2.2069 -0.1614 9 6 4.4737 -3.1331 -0.4526 10 6 6.9419 -2.7094 -0.0438 11 1 7.6261 -1.9103 0.2413 12 6 7.0171 -3.8885 0.9581 13 7 8.2074 -4.6605 0.5454 14 6 8.9466 -5.4852 1.3509 15 1 8.7401 -5.5327 2.4098 16 6 9.9613 -6.2601 0.8061 17 7 10.3123 -6.0952 -0.4517 18 14 10.8287 -7.5369 1.8582 19 1 10.1902 -8.8622 1.6551 20 1 12.2592 -7.6116 1.4669 21 1 10.7262 -7.1519 3.2888 22 6 8.4654 -4.3963 -0.8776 23 6 7.3997 -3.3900 -1.3608 24 1 6.5687 -3.9084 -1.8393 25 8 7.9757 -2.4322 -2.2513 26 16 2.4828 -1.4037 -0.0088 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 4.2433 1.7163 -0.0010 31 1 3.9924 -3.4305 0.4791 32 1 3.7450 -2.6418 -1.0973 33 1 4.8675 -4.0159 -0.9560 34 1 7.1423 -3.5153 1.9745 35 1 6.1198 -4.5034 0.8882 36 1 11.0211 -6.6370 -0.8324 37 1 8.3859 -5.3224 -1.4469 38 1 9.4609 -3.9697 -1.0010 39 1 8.3473 -2.8175 -3.0565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001047323178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:01 Heat of formation + Delta-G solvation = 5.408830 kcal Electronic energy + Delta-G solvation = -23761.064290 eV Core-core repulsion = 20218.217158 eV Total energy + Delta-G solvation = -3542.847132 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -40.33703 -39.50548 -37.79072 -35.32512 -34.84884 -32.61648 -31.88348 -29.40376 -28.32316 -27.51186 -26.77843 -24.80861 -24.12226 -22.08919 -20.49878 -19.83699 -18.84359 -18.62339 -17.14798 -16.95585 -16.48041 -16.08602 -15.65272 -15.21694 -14.75197 -14.58319 -14.08445 -14.06310 -13.63980 -13.28217 -13.21181 -12.99091 -12.82247 -12.71746 -12.52343 -12.33905 -12.11031 -11.66937 -11.46359 -11.29444 -10.92509 -10.85915 -10.20666 -10.07849 -10.03449 -9.85224 -9.76930 -9.54785 -9.34731 -9.10076 -8.74207 -8.44884 -6.98052 -5.83165 -3.17590 0.09286 0.99694 1.41036 2.34172 2.91767 3.17502 3.35219 3.40890 3.42959 3.86207 4.39282 4.46272 4.67084 4.72002 4.88112 5.05340 5.09222 5.10862 5.16220 5.27953 5.38998 5.46283 5.48960 5.52185 5.65244 5.79802 5.91969 5.97235 6.03147 6.38941 6.48607 6.75380 7.29856 7.32894 7.41127 7.47771 7.68205 8.09243 8.14389 8.15828 9.07892 9.68070 10.31620 11.28681 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.003252 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.974693 B = 8607.778025 C = 8974.724354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.025 3.975 3 N -0.484 5.484 4 C 0.118 3.882 5 C -0.289 4.289 6 C 0.594 3.406 7 O -0.520 6.520 8 N -0.594 5.594 9 C 0.061 3.939 10 C 0.135 3.865 11 H 0.118 0.882 12 C 0.132 3.868 13 N -0.598 5.598 14 C -0.233 4.233 15 H 0.081 0.919 16 C -0.004 4.004 17 N -0.920 5.920 18 Si 0.914 3.086 19 H -0.288 1.288 20 H -0.290 1.290 21 H -0.280 1.280 22 C 0.151 3.849 23 C 0.065 3.935 24 H 0.056 0.944 25 O -0.560 6.560 26 S 0.192 5.808 27 H 0.088 0.912 28 H 0.082 0.918 29 H 0.089 0.911 30 H 0.187 0.813 31 H 0.068 0.932 32 H 0.072 0.928 33 H 0.096 0.904 34 H 0.050 0.950 35 H 0.028 0.972 36 H 0.254 0.746 37 H 0.052 0.948 38 H 0.058 0.942 39 H 0.375 0.625 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.714 7.069 -2.440 21.085 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.249 4.249 3 N -0.199 5.199 4 C -0.039 4.039 5 C -0.413 4.413 6 C 0.380 3.620 7 O -0.397 6.397 8 N -0.326 5.326 9 C -0.084 4.084 10 C 0.032 3.968 11 H 0.136 0.864 12 C 0.004 3.996 13 N -0.326 5.326 14 C -0.361 4.361 15 H 0.099 0.901 16 C -0.201 4.201 17 N -0.566 5.566 18 Si 0.744 3.256 19 H -0.215 1.215 20 H -0.217 1.217 21 H -0.205 1.205 22 C 0.025 3.975 23 C 0.005 3.995 24 H 0.073 0.927 25 O -0.365 6.365 26 S 0.449 5.551 27 H 0.106 0.894 28 H 0.101 0.899 29 H 0.108 0.892 30 H 0.204 0.796 31 H 0.086 0.914 32 H 0.089 0.911 33 H 0.114 0.886 34 H 0.068 0.932 35 H 0.045 0.955 36 H 0.064 0.936 37 H 0.070 0.930 38 H 0.076 0.924 39 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -19.760 7.178 -1.915 21.110 hybrid contribution 1.224 -0.450 -0.024 1.305 sum -18.536 6.728 -1.939 19.814 Atomic orbital electron populations 1.20487 0.85181 1.04356 1.03995 1.27888 1.02582 0.93630 1.00761 1.66291 1.04687 1.31857 1.17029 1.22149 0.90848 0.95509 0.95403 1.25811 0.97878 0.97869 1.19747 1.16736 0.85950 0.82202 0.77095 1.90852 1.44418 1.54637 1.49789 1.47539 1.08752 1.06365 1.69927 1.21992 0.89466 0.95240 1.01669 1.22479 0.80857 0.98081 0.95399 0.86425 1.21829 0.91466 0.90290 0.95968 1.44302 1.28974 1.52255 1.07078 1.19071 1.11416 1.14982 0.90581 0.90074 1.24845 0.99002 0.99786 0.96467 1.69947 1.32076 1.41947 1.12671 0.86063 0.78649 0.81559 0.79289 1.21511 1.21674 1.20498 1.21878 0.95156 0.95043 0.85422 1.23561 0.96045 0.90206 0.89706 0.92652 1.86508 1.79505 1.35929 1.34510 1.84358 0.95452 1.09498 1.65756 0.89372 0.89917 0.89247 0.79643 0.91369 0.91051 0.88571 0.93211 0.95458 0.93568 0.93013 0.92423 0.77871 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.46 10.46 36.01 0.38 -0.08 16 2 C 0.03 0.24 7.39 -13.29 -0.10 0.15 16 3 N -0.48 -5.95 10.51 -11.50 -0.12 -6.07 16 4 C 0.12 1.55 11.10 -18.85 -0.21 1.34 16 5 C -0.29 -3.90 6.20 -37.10 -0.23 -4.13 16 6 C 0.59 9.96 7.63 -12.85 -0.10 9.86 16 7 O -0.52 -10.60 16.28 5.20 0.08 -10.51 16 8 N -0.59 -9.40 2.91 -173.02 -0.50 -9.90 16 9 C 0.06 0.71 7.44 59.85 0.45 1.16 16 10 C 0.14 2.58 3.15 -65.78 -0.21 2.37 16 11 H 0.12 2.59 7.04 -51.93 -0.37 2.23 16 12 C 0.13 2.66 6.81 -2.35 -0.02 2.64 16 13 N -0.60 -14.85 3.41 -169.81 -0.58 -15.42 16 14 C -0.23 -6.32 10.27 -15.06 -0.15 -6.47 16 15 H 0.08 2.13 7.84 -52.49 -0.41 1.71 16 16 C 0.00 -0.12 5.48 -17.43 -0.10 -0.21 16 17 N -0.92 -26.20 10.37 55.49 0.58 -25.63 16 18 Si 0.91 21.58 29.56 -169.99 -5.02 16.56 16 19 H -0.29 -6.76 7.11 56.52 0.40 -6.36 16 20 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 22 C 0.15 3.53 5.14 -3.07 -0.02 3.51 16 23 C 0.07 1.24 3.87 -24.90 -0.10 1.14 16 24 H 0.06 0.94 6.48 -51.92 -0.34 0.60 16 25 O -0.56 -10.43 13.39 -35.23 -0.47 -10.91 16 26 S 0.19 1.81 18.12 -107.50 -1.95 -0.13 16 27 H 0.09 0.39 8.14 -51.93 -0.42 -0.03 16 28 H 0.08 0.31 8.14 -51.93 -0.42 -0.11 16 29 H 0.09 0.50 8.14 -51.93 -0.42 0.07 16 30 H 0.19 2.32 8.06 -52.49 -0.42 1.89 16 31 H 0.07 0.69 7.55 -51.93 -0.39 0.29 16 32 H 0.07 0.71 5.12 -28.24 -0.14 0.57 16 33 H 0.10 1.10 6.37 -51.93 -0.33 0.77 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.03 0.51 6.94 -51.93 -0.36 0.15 16 36 H 0.25 7.03 8.31 -40.82 -0.34 6.69 16 37 H 0.05 1.30 7.36 -51.93 -0.38 0.92 16 38 H 0.06 1.53 7.46 -51.93 -0.39 1.15 16 39 H 0.37 5.39 9.11 45.56 0.42 5.81 16 LS Contribution 331.03 15.07 4.99 4.99 Total: -1.00 -34.05 331.03 -7.34 -41.39 By element: Atomic # 1 Polarization: 8.31 SS G_CDS: -3.95 Total: 4.36 kcal Atomic # 6 Polarization: 11.67 SS G_CDS: -0.40 Total: 11.27 kcal Atomic # 7 Polarization: -56.39 SS G_CDS: -0.63 Total: -57.02 kcal Atomic # 8 Polarization: -21.03 SS G_CDS: -0.39 Total: -21.42 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -5.02 Total: 16.56 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.95 Total: -0.13 kcal Total LS contribution 4.99 Total: 4.99 kcal Total: -34.05 -7.34 -41.39 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047323178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.798 kcal (2) G-P(sol) polarization free energy of solvation -34.047 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.389 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.409 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds