Wall clock time and date at job start Tue Mar 31 2020 09:49:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 N 1.29430 * 124.80326 * 2 1 4 4 C 1.30943 * 117.36361 * 180.02562 * 3 2 1 5 5 C 1.35666 * 114.18911 * 0.02562 * 4 3 2 6 6 C 1.46679 * 126.12901 * 180.02562 * 5 4 3 7 7 O 1.21692 * 120.00109 * 7.80299 * 6 5 4 8 8 N 1.34774 * 120.00056 * 187.80818 * 6 5 4 9 9 C 1.46501 * 119.99992 * 5.39901 * 8 6 5 10 10 C 1.46500 * 120.00125 * 185.39642 * 8 6 5 11 11 H 1.09002 * 110.91449 * 3.90175 * 10 8 6 12 12 C 1.54911 * 111.00244 * 127.79979 * 10 8 6 13 13 N 1.47753 * 104.83867 * 155.16753 * 12 10 8 14 14 C 1.36943 * 125.81834 * 155.82801 * 13 12 10 15 15 H 1.07996 * 120.00368 * 353.39267 * 14 13 12 16 16 C 1.38813 * 119.99598 * 173.38857 * 14 13 12 17 17 N 1.31617 * 120.00065 * 7.52919 * 16 14 13 18 18 Si 1.86798 * 119.99774 * 187.52550 * 16 14 13 19 19 H 1.48504 * 109.46952 * 94.98297 * 18 16 14 20 20 H 1.48496 * 109.47056 * 214.97976 * 18 16 14 21 21 H 1.48501 * 109.47235 * 334.98014 * 18 16 14 22 22 C 1.47016 * 108.53018 * 335.75645 * 13 12 10 23 23 C 1.54319 * 107.40342 * 1.17873 * 22 13 12 24 24 H 1.09008 * 110.71847 * 263.57924 * 23 22 13 25 25 O 1.42901 * 110.72197 * 140.48323 * 23 22 13 26 26 S 1.70953 * 124.80447 * 180.36055 * 2 1 3 27 27 H 1.08998 * 109.47684 * 89.97524 * 1 2 3 28 28 H 1.09004 * 109.47254 * 209.97537 * 1 2 3 29 29 H 1.09003 * 109.46798 * 329.96977 * 1 2 3 30 30 H 1.07994 * 122.90776 * 179.97438 * 4 3 2 31 31 H 1.09000 * 109.47095 * 275.92856 * 9 8 6 32 32 H 1.08995 * 109.47119 * 35.92955 * 9 8 6 33 33 H 1.08996 * 109.46913 * 155.93275 * 9 8 6 34 34 H 1.09000 * 110.36974 * 273.92277 * 12 10 8 35 35 H 1.08999 * 110.36534 * 36.14160 * 12 10 8 36 36 H 0.96999 * 119.99896 * 180.02562 * 17 16 14 37 37 H 1.09000 * 109.87917 * 241.68136 * 22 13 12 38 38 H 1.09006 * 109.88575 * 120.67203 * 22 13 12 39 39 H 0.96692 * 114.00406 * 61.45316 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2458 1.0628 0.0000 4 6 3.5442 0.8932 -0.0005 5 6 3.9351 -0.4059 -0.0015 6 6 5.3188 -0.8926 -0.0018 7 8 6.2393 -0.1097 0.1421 8 7 5.5708 -2.2069 -0.1614 9 6 4.4737 -3.1331 -0.4526 10 6 6.9419 -2.7094 -0.0438 11 1 7.6261 -1.9103 0.2413 12 6 7.0171 -3.8885 0.9581 13 7 8.2074 -4.6605 0.5454 14 6 8.9466 -5.4852 1.3509 15 1 8.7401 -5.5327 2.4098 16 6 9.9613 -6.2601 0.8061 17 7 10.3123 -6.0952 -0.4517 18 14 10.8287 -7.5369 1.8582 19 1 10.1902 -8.8622 1.6551 20 1 12.2592 -7.6116 1.4669 21 1 10.7262 -7.1519 3.2888 22 6 8.4654 -4.3963 -0.8776 23 6 7.3997 -3.3900 -1.3608 24 1 6.5687 -3.9084 -1.8393 25 8 7.9757 -2.4322 -2.2513 26 16 2.4828 -1.4037 -0.0088 27 1 -0.3634 0.0004 -1.0276 28 1 -0.3634 -0.8902 0.5135 29 1 -0.3633 0.8898 0.5143 30 1 4.2433 1.7163 -0.0010 31 1 3.9924 -3.4305 0.4791 32 1 3.7450 -2.6418 -1.0973 33 1 4.8675 -4.0159 -0.9560 34 1 7.1423 -3.5153 1.9745 35 1 6.1198 -4.5034 0.8882 36 1 11.0211 -6.6370 -0.8324 37 1 8.3859 -5.3224 -1.4469 38 1 9.4609 -3.9697 -1.0010 39 1 8.3473 -2.8175 -3.0565 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001047323178.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:01 Heat of formation + Delta-G solvation = -21.570049 kcal Electronic energy + Delta-G solvation = -23762.234182 eV Core-core repulsion = 20218.217158 eV Total energy + Delta-G solvation = -3544.017024 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -41.52995 -40.59678 -39.31354 -36.77784 -36.46797 -34.00143 -33.15663 -30.78468 -29.65554 -28.95671 -28.04992 -26.41881 -25.20494 -23.29022 -22.32340 -21.21538 -19.82365 -19.73532 -19.03985 -18.31162 -17.62785 -17.54274 -16.77958 -16.71649 -16.07275 -15.80280 -15.62458 -15.29598 -14.72900 -14.54558 -14.40270 -14.38286 -14.15437 -13.86072 -13.62669 -13.39760 -13.17403 -13.16137 -13.03001 -12.76921 -12.71606 -12.53699 -12.06710 -11.90523 -11.64294 -11.32729 -10.98352 -10.75407 -10.61500 -10.43828 -10.07861 -9.65374 -8.97260 -7.90120 -5.26940 -0.80748 0.15209 0.56456 1.34210 1.47486 1.48758 1.57714 1.67515 2.03938 2.47614 3.06060 3.13125 3.31796 3.45060 3.55952 3.78174 3.91377 4.00588 4.02054 4.13413 4.21648 4.39025 4.40670 4.42939 4.64328 4.67833 4.71131 4.77596 4.95597 4.96432 5.20038 5.32776 5.39197 5.40785 5.64022 6.10926 6.12759 6.60377 6.81555 6.87719 7.02578 7.67328 8.30832 9.20242 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.028771 B = 0.003252 C = 0.003119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 972.974693 B = 8607.778025 C = 8974.724354 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.084 4.084 2 C 0.031 3.969 3 N -0.512 5.512 4 C 0.120 3.880 5 C -0.328 4.328 6 C 0.591 3.409 7 O -0.572 6.572 8 N -0.592 5.592 9 C 0.051 3.949 10 C 0.147 3.853 11 H 0.080 0.920 12 C 0.135 3.865 13 N -0.620 5.620 14 C -0.247 4.247 15 H 0.086 0.914 16 C -0.060 4.060 17 N -0.948 5.948 18 Si 0.981 3.019 19 H -0.282 1.282 20 H -0.297 1.297 21 H -0.269 1.269 22 C 0.163 3.837 23 C 0.083 3.917 24 H 0.089 0.911 25 O -0.573 6.573 26 S 0.264 5.736 27 H 0.107 0.893 28 H 0.109 0.891 29 H 0.092 0.908 30 H 0.178 0.822 31 H 0.091 0.909 32 H 0.092 0.908 33 H 0.104 0.896 34 H 0.045 0.955 35 H 0.059 0.941 36 H 0.249 0.751 37 H 0.031 0.969 38 H 0.014 0.986 39 H 0.392 0.608 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.181 6.014 -2.214 24.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.241 4.241 3 N -0.227 5.227 4 C -0.039 4.039 5 C -0.452 4.452 6 C 0.380 3.620 7 O -0.453 6.453 8 N -0.323 5.323 9 C -0.092 4.092 10 C 0.041 3.959 11 H 0.098 0.902 12 C 0.009 3.991 13 N -0.348 5.348 14 C -0.375 4.375 15 H 0.104 0.896 16 C -0.254 4.254 17 N -0.596 5.596 18 Si 0.808 3.192 19 H -0.209 1.209 20 H -0.224 1.224 21 H -0.194 1.194 22 C 0.037 3.963 23 C 0.023 3.977 24 H 0.106 0.894 25 O -0.380 6.380 26 S 0.522 5.478 27 H 0.126 0.874 28 H 0.128 0.872 29 H 0.111 0.889 30 H 0.195 0.805 31 H 0.109 0.891 32 H 0.109 0.891 33 H 0.122 0.878 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.058 0.942 37 H 0.049 0.951 38 H 0.032 0.968 39 H 0.242 0.758 Dipole moment (debyes) X Y Z Total from point charges -23.294 6.098 -1.691 24.138 hybrid contribution 2.171 -0.072 -0.095 2.174 sum -21.122 6.026 -1.786 22.038 Atomic orbital electron populations 1.20764 0.82123 1.05853 1.05620 1.28684 1.04374 0.93330 0.97729 1.66380 1.04229 1.33139 1.18968 1.22165 0.91497 0.95511 0.94769 1.25507 0.97895 0.99159 1.22596 1.17172 0.86939 0.81949 0.75988 1.90814 1.46422 1.55906 1.52112 1.47503 1.08270 1.06858 1.69647 1.22338 0.88655 0.94786 1.03427 1.21993 0.82433 0.96397 0.95027 0.90202 1.21941 0.90841 0.90419 0.95909 1.44564 1.30248 1.52489 1.07508 1.19450 1.11674 1.15108 0.91264 0.89606 1.25675 1.00094 1.01808 0.97778 1.70150 1.32535 1.42686 1.14203 0.85035 0.76872 0.79075 0.78173 1.20874 1.22393 1.19353 1.21619 0.94676 0.94938 0.85107 1.23370 0.95266 0.89134 0.89964 0.89355 1.86481 1.79747 1.36316 1.35440 1.83905 0.92023 1.07469 1.64380 0.87443 0.87246 0.88938 0.80527 0.89093 0.89063 0.87797 0.93686 0.92352 0.94162 0.95108 0.96753 0.75788 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.60 10.46 71.24 0.75 0.14 16 2 C 0.03 0.51 7.39 88.46 0.65 1.16 16 3 N -0.51 -11.76 10.51 -190.30 -2.00 -13.76 16 4 C 0.12 3.11 11.10 84.23 0.93 4.04 16 5 C -0.33 -8.48 6.20 23.88 0.15 -8.33 16 6 C 0.59 19.86 7.63 86.45 0.66 20.52 16 7 O -0.57 -24.41 16.28 -4.32 -0.07 -24.48 16 8 N -0.59 -18.06 2.91 -819.55 -2.38 -20.45 16 9 C 0.05 1.01 7.44 127.77 0.95 1.96 16 10 C 0.15 5.60 3.15 46.38 0.15 5.74 16 11 H 0.08 3.69 7.04 -2.39 -0.02 3.68 16 12 C 0.14 5.37 6.81 86.79 0.59 5.96 16 13 N -0.62 -31.16 3.41 -691.16 -2.35 -33.51 16 14 C -0.25 -13.51 10.27 84.03 0.86 -12.64 16 15 H 0.09 4.49 7.84 -2.91 -0.02 4.47 16 16 C -0.06 -3.34 5.48 84.86 0.46 -2.87 16 17 N -0.95 -55.50 10.37 21.65 0.22 -55.28 16 18 Si 0.98 44.71 29.56 68.60 2.03 46.74 16 19 H -0.28 -12.51 7.11 99.48 0.71 -11.80 16 20 H -0.30 -13.76 7.11 99.48 0.71 -13.06 16 21 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 22 C 0.16 7.82 5.14 86.73 0.45 8.27 16 23 C 0.08 3.13 3.87 31.78 0.12 3.25 16 24 H 0.09 2.78 6.48 -2.38 -0.02 2.76 16 25 O -0.57 -21.45 13.39 -148.98 -1.99 -23.44 16 26 S 0.26 4.04 18.12 -56.49 -1.02 3.02 16 27 H 0.11 0.46 8.14 -2.39 -0.02 0.44 16 28 H 0.11 0.25 8.14 -2.38 -0.02 0.23 16 29 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 30 H 0.18 4.66 8.06 -2.91 -0.02 4.64 16 31 H 0.09 1.43 7.55 -2.39 -0.02 1.41 16 32 H 0.09 1.46 5.12 -17.45 -0.09 1.37 16 33 H 0.10 1.97 6.37 -2.39 -0.02 1.95 16 34 H 0.04 1.82 8.14 -2.39 -0.02 1.80 16 35 H 0.06 2.00 6.94 -2.39 -0.02 1.99 16 36 H 0.25 14.18 8.31 -92.71 -0.77 13.41 16 37 H 0.03 1.59 7.36 -2.39 -0.02 1.57 16 38 H 0.01 0.80 7.46 -2.38 -0.02 0.78 16 39 H 0.39 11.26 9.11 -74.06 -0.67 10.59 16 Total: -1.00 -77.51 331.03 -0.50 -78.01 By element: Atomic # 1 Polarization: 15.61 SS G_CDS: 0.34 Total: 15.96 kcal Atomic # 6 Polarization: 20.47 SS G_CDS: 6.73 Total: 27.20 kcal Atomic # 7 Polarization: -116.48 SS G_CDS: -6.51 Total: -123.00 kcal Atomic # 8 Polarization: -45.86 SS G_CDS: -2.07 Total: -47.92 kcal Atomic # 14 Polarization: 44.71 SS G_CDS: 2.03 Total: 46.74 kcal Atomic # 16 Polarization: 4.04 SS G_CDS: -1.02 Total: 3.02 kcal Total: -77.51 -0.50 -78.01 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001047323178.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.439 kcal (2) G-P(sol) polarization free energy of solvation -77.506 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.067 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.503 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.570 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds