Wall clock time and date at job start Tue Mar 31 2020 09:45:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 N 1.30943 * 122.90971 * 2 1 4 4 C 1.29430 * 117.36719 * 180.34436 * 3 2 1 5 5 S 1.70957 * 110.38849 * 359.70996 * 4 3 2 6 6 C 1.35663 * 122.90071 * 179.80253 * 2 1 3 7 7 C 1.46686 * 126.13332 * 359.96562 * 6 2 1 8 8 O 1.21686 * 119.99753 * 359.71599 * 7 6 2 9 9 N 1.34769 * 120.00110 * 179.71139 * 7 6 2 10 10 C 1.46498 * 120.00058 * 179.97438 * 9 7 6 11 11 C 1.53000 * 109.47277 * 180.02562 * 10 9 7 12 12 H 1.09001 * 109.67713 * 300.59747 * 11 10 9 13 13 C 1.53298 * 109.68058 * 180.08341 * 11 10 9 14 14 O 1.42965 * 109.22073 * 187.97460 * 13 11 10 15 15 C 1.42967 * 114.16857 * 62.57725 * 14 13 11 16 16 C 1.53293 * 109.22108 * 297.42384 * 15 14 13 17 17 N 1.47147 * 109.68176 * 61.11764 * 11 10 9 18 18 C 1.36938 * 120.98283 * 350.23387 * 17 11 10 19 19 H 1.07999 * 120.00041 * 49.86823 * 18 17 11 20 20 C 1.38810 * 119.99815 * 229.87463 * 18 17 11 21 21 N 1.31618 * 119.99813 * 188.96958 * 20 18 17 22 22 Si 1.86796 * 120.00287 * 8.96405 * 20 18 17 23 23 H 1.48507 * 109.47136 * 84.28724 * 22 20 18 24 24 H 1.48499 * 109.47247 * 204.27947 * 22 20 18 25 25 H 1.48495 * 109.47595 * 324.28674 * 22 20 18 26 26 H 1.09000 * 109.47323 * 270.19687 * 1 2 3 27 27 H 1.09003 * 109.46510 * 30.19720 * 1 2 3 28 28 H 1.08996 * 109.47533 * 150.19142 * 1 2 3 29 29 H 1.07994 * 124.80314 * 179.72294 * 4 3 2 30 30 H 0.97006 * 120.00201 * 0.02562 * 9 7 6 31 31 H 1.09001 * 109.46727 * 60.00840 * 10 9 7 32 32 H 1.08997 * 109.47603 * 300.00767 * 10 9 7 33 33 H 1.08994 * 109.51255 * 307.89605 * 13 11 10 34 34 H 1.08997 * 109.51127 * 68.00001 * 13 11 10 35 35 H 1.09000 * 109.50894 * 57.34169 * 15 14 13 36 36 H 1.08990 * 109.51106 * 177.49117 * 15 14 13 37 37 H 1.09000 * 109.68032 * 172.02365 * 16 15 14 38 38 H 1.08999 * 109.67864 * 292.57049 * 16 15 14 39 39 H 0.97006 * 120.00818 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2184 1.0993 0.0000 4 6 3.5067 0.9743 -0.0069 5 16 3.9447 -0.6782 -0.0064 6 6 2.2439 -1.1390 0.0039 7 6 1.7190 -2.5088 0.0094 8 8 0.5173 -2.6998 0.0159 9 7 2.5677 -3.5556 0.0070 10 6 2.0435 -4.9236 0.0130 11 6 3.2080 -5.9161 0.0094 12 1 3.8217 -5.7587 -0.8776 13 6 2.6647 -7.3495 0.0136 14 8 3.7487 -8.2632 0.1975 15 6 4.4315 -8.1179 1.4451 16 6 5.0652 -6.7237 1.5142 17 7 4.0255 -5.7253 1.2179 18 6 3.8244 -4.6507 2.0426 19 1 2.8289 -4.4137 2.3878 20 6 4.9002 -3.8660 2.4347 21 7 4.7399 -2.9455 3.3617 22 14 6.5753 -4.1164 1.6469 23 1 6.6440 -3.3512 0.3761 24 1 7.6338 -3.6365 2.5714 25 1 6.7799 -5.5603 1.3670 26 1 -0.3634 0.0035 1.0276 27 1 -0.3632 0.8883 -0.5169 28 1 -0.3634 -0.8916 -0.5108 29 1 4.2058 1.7974 -0.0120 30 1 3.5258 -3.4034 0.0021 31 1 1.4289 -5.0810 -0.8733 32 1 1.4386 -5.0771 0.9066 33 1 1.9490 -7.4652 0.8274 34 1 2.1718 -7.5547 -0.9367 35 1 3.7221 -8.2363 2.2642 36 1 5.2102 -8.8762 1.5245 37 1 5.4654 -6.5516 2.5134 38 1 5.8664 -6.6479 0.7792 39 1 5.4917 -2.3973 3.6362 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050818521.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:46 Heat of formation + Delta-G solvation = 3.369426 kcal Electronic energy + Delta-G solvation = -24650.047599 eV Core-core repulsion = 21107.112032 eV Total energy + Delta-G solvation = -3542.935567 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -39.97289 -39.08447 -38.24413 -35.45973 -33.64464 -31.92230 -31.56992 -31.08679 -28.30176 -27.45510 -25.41080 -24.69253 -23.38870 -22.42575 -20.97171 -20.08802 -18.92409 -18.07224 -16.99300 -16.29205 -15.92715 -15.87847 -15.35023 -15.13990 -14.78066 -14.46564 -14.28413 -14.07538 -13.70738 -13.45681 -13.29784 -12.99593 -12.70162 -12.27095 -12.24021 -12.04193 -11.93825 -11.61381 -11.05145 -10.98310 -10.87143 -10.81295 -10.29946 -9.93961 -9.74744 -9.61979 -9.41511 -9.23900 -9.14769 -8.65831 -8.59214 -8.28669 -6.77070 -6.14267 -3.79170 0.56897 1.52216 1.91125 2.75489 3.17550 3.30583 3.33856 3.56554 3.78015 4.28009 4.34657 4.38326 4.67629 5.11141 5.23689 5.26654 5.40744 5.41843 5.55462 5.66105 5.80342 5.88526 5.90954 5.93639 6.00056 6.03005 6.09572 6.11028 6.23327 6.39003 6.55910 6.58595 6.72215 7.02461 7.58519 7.81387 7.90046 8.11158 8.26596 8.70738 8.73250 9.46584 9.94089 10.97480 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.016371 B = 0.005883 C = 0.004712 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1709.887265 B = 4758.065813 C = 5940.823609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C 0.126 3.874 3 N -0.478 5.478 4 C 0.012 3.988 5 S 0.192 5.808 6 C -0.274 4.274 7 C 0.594 3.406 8 O -0.546 6.546 9 N -0.682 5.682 10 C 0.141 3.859 11 C 0.122 3.878 12 H 0.045 0.955 13 C 0.056 3.944 14 O -0.389 6.389 15 C 0.042 3.958 16 C 0.102 3.898 17 N -0.605 5.605 18 C -0.274 4.274 19 H 0.078 0.922 20 C 0.051 3.949 21 N -0.891 5.891 22 Si 0.837 3.163 23 H -0.280 1.280 24 H -0.297 1.297 25 H -0.235 1.235 26 H 0.077 0.923 27 H 0.067 0.933 28 H 0.098 0.902 29 H 0.200 0.800 30 H 0.408 0.592 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.052 0.948 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.074 0.926 38 H 0.042 0.958 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.579 0.437 -7.743 7.777 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.012 4.012 3 N -0.193 5.193 4 C -0.283 4.283 5 S 0.448 5.552 6 C -0.398 4.398 7 C 0.379 3.621 8 O -0.428 6.428 9 N -0.332 5.332 10 C 0.017 3.983 11 C 0.016 3.984 12 H 0.062 0.938 13 C -0.023 4.023 14 O -0.307 6.307 15 C -0.036 4.036 16 C -0.023 4.023 17 N -0.333 5.333 18 C -0.403 4.403 19 H 0.096 0.904 20 C -0.153 4.153 21 N -0.530 5.530 22 Si 0.665 3.335 23 H -0.207 1.207 24 H -0.224 1.224 25 H -0.160 1.160 26 H 0.096 0.904 27 H 0.086 0.914 28 H 0.117 0.883 29 H 0.217 0.783 30 H 0.246 0.754 31 H 0.081 0.919 32 H 0.091 0.909 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.060 0.940 39 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -0.454 0.323 -7.748 7.768 hybrid contribution 0.865 0.500 0.232 1.026 sum 0.411 0.823 -7.516 7.572 Atomic orbital electron populations 1.20577 0.86274 1.03885 1.03491 1.20628 0.98551 0.85060 0.96959 1.66081 1.04920 1.31471 1.16785 1.28579 0.95403 1.01017 1.03287 1.84371 1.05617 1.01909 1.63304 1.25558 0.96113 0.99438 1.18741 1.16577 0.86041 0.82494 0.76998 1.90708 1.14391 1.85162 1.52491 1.45761 1.10280 1.05154 1.71997 1.21130 0.95463 0.80358 1.01376 1.21578 0.92517 0.93144 0.91190 0.93777 1.22876 0.88818 0.89533 1.01065 1.87825 1.47427 1.57131 1.38359 1.23150 0.96005 0.98657 0.85752 1.22372 0.91685 0.87993 1.00222 1.44350 1.39671 1.25605 1.23664 1.18659 0.95641 1.02605 1.23365 0.90447 1.25729 0.98044 0.94723 0.96754 1.69781 1.31606 1.22211 1.29413 0.87779 0.84974 0.81225 0.79486 1.20679 1.22355 1.16005 0.90440 0.91364 0.88301 0.78316 0.75439 0.91926 0.90924 0.93001 0.89459 0.93324 0.89952 0.90793 0.94038 0.92480 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.29 9.69 36.01 0.35 -0.94 16 2 C 0.13 2.24 6.79 -83.89 -0.57 1.67 16 3 N -0.48 -7.98 10.50 -11.53 -0.12 -8.10 16 4 C 0.01 0.17 12.22 51.75 0.63 0.80 16 5 S 0.19 3.20 22.35 -107.50 -2.40 0.79 16 6 C -0.27 -5.14 6.48 -37.09 -0.24 -5.38 16 7 C 0.59 11.97 7.78 -12.85 -0.10 11.87 16 8 O -0.55 -11.62 14.27 5.20 0.07 -11.54 16 9 N -0.68 -13.37 4.12 -61.62 -0.25 -13.62 16 10 C 0.14 2.53 4.50 -4.04 -0.02 2.52 16 11 C 0.12 2.18 3.20 -67.42 -0.22 1.97 16 12 H 0.04 0.79 8.14 -51.93 -0.42 0.37 16 13 C 0.06 0.89 6.29 37.31 0.23 1.12 16 14 O -0.39 -6.70 10.74 -35.23 -0.38 -7.08 16 15 C 0.04 0.71 6.99 37.31 0.26 0.97 16 16 C 0.10 1.98 4.27 -3.53 -0.02 1.96 16 17 N -0.61 -12.62 2.45 -164.30 -0.40 -13.03 16 18 C -0.27 -6.64 6.66 -15.06 -0.10 -6.74 16 19 H 0.08 2.16 7.11 -52.49 -0.37 1.79 16 20 C 0.05 1.27 5.36 -17.43 -0.09 1.18 16 21 N -0.89 -24.30 13.97 55.49 0.78 -23.52 16 22 Si 0.84 18.73 26.73 -169.99 -4.54 14.18 16 23 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 24 H -0.30 -6.97 7.11 56.52 0.40 -6.57 16 25 H -0.24 -4.88 3.87 56.52 0.22 -4.66 16 26 H 0.08 1.19 8.14 -51.93 -0.42 0.76 16 27 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.10 1.61 6.02 -51.93 -0.31 1.30 16 29 H 0.20 2.02 8.06 -52.49 -0.42 1.60 16 30 H 0.41 8.31 6.52 -40.82 -0.27 8.05 16 31 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 32 H 0.07 1.44 7.56 -51.93 -0.39 1.05 16 33 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 34 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 35 H 0.05 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 37 H 0.07 1.50 6.86 -51.93 -0.36 1.15 16 38 H 0.04 0.82 6.13 -51.93 -0.32 0.50 16 39 H 0.27 6.99 8.31 -40.82 -0.34 6.65 16 LS Contribution 325.13 15.07 4.90 4.90 Total: -1.00 -29.16 325.13 -7.37 -36.53 By element: Atomic # 1 Polarization: 14.65 SS G_CDS: -5.14 Total: 9.51 kcal Atomic # 6 Polarization: 10.86 SS G_CDS: 0.12 Total: 10.98 kcal Atomic # 7 Polarization: -58.27 SS G_CDS: 0.00 Total: -58.27 kcal Atomic # 8 Polarization: -18.32 SS G_CDS: -0.30 Total: -18.62 kcal Atomic # 14 Polarization: 18.73 SS G_CDS: -4.54 Total: 14.18 kcal Atomic # 16 Polarization: 3.20 SS G_CDS: -2.40 Total: 0.79 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -29.16 -7.37 -36.53 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050818521.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.900 kcal (2) G-P(sol) polarization free energy of solvation -29.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.369 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds