Wall clock time and date at job start Tue Mar 31 2020 09:36:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35008 * 127.27316 * 2 1 4 4 C 1.39476 * 111.68163 * 180.13656 * 3 2 1 5 5 C 1.47698 * 122.10360 * 179.78769 * 4 3 2 6 6 O 1.21578 * 119.99798 * 359.73975 * 5 4 3 7 7 N 1.34776 * 120.00437 * 179.73999 * 5 4 3 8 8 C 1.46490 * 120.00069 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47220 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.67694 * 300.54121 * 9 8 7 11 11 C 1.53293 * 109.68149 * 180.02562 * 9 8 7 12 12 O 1.42966 * 109.21810 * 187.97537 * 11 9 8 13 13 C 1.42961 * 114.16765 * 62.58154 * 12 11 9 14 14 C 1.53294 * 109.21980 * 297.41519 * 13 12 11 15 15 N 1.47151 * 109.67761 * 61.05336 * 9 8 7 16 16 C 1.36933 * 120.98778 * 350.23868 * 15 9 8 17 17 H 1.08006 * 119.99869 * 49.90240 * 16 15 9 18 18 C 1.38808 * 120.00112 * 229.90632 * 16 15 9 19 19 N 1.31624 * 120.00067 * 188.89590 * 18 16 15 20 20 Si 1.86804 * 120.00148 * 8.89418 * 18 16 15 21 21 H 1.48500 * 109.46777 * 84.33063 * 20 18 16 22 22 H 1.48497 * 109.47176 * 204.32601 * 20 18 16 23 23 H 1.48496 * 109.46974 * 324.33075 * 20 18 16 24 24 N 1.30604 * 115.79536 * 359.51920 * 4 3 2 25 25 S 1.56142 * 109.79654 * 0.26798 * 24 4 3 26 26 H 1.09000 * 109.47049 * 180.33296 * 1 2 3 27 27 H 1.08999 * 109.46768 * 300.32965 * 1 2 3 28 28 H 1.08998 * 109.47425 * 60.33001 * 1 2 3 29 29 H 1.07995 * 124.15641 * 359.92757 * 3 2 1 30 30 H 0.96997 * 119.99709 * 0.02562 * 7 5 4 31 31 H 1.08996 * 109.47383 * 60.00133 * 8 7 5 32 32 H 1.08996 * 109.47411 * 299.99954 * 8 7 5 33 33 H 1.09001 * 109.51287 * 307.89677 * 11 9 8 34 34 H 1.08994 * 109.51415 * 68.00345 * 11 9 8 35 35 H 1.08997 * 109.51337 * 57.34549 * 13 12 11 36 36 H 1.09002 * 109.51081 * 177.49233 * 13 12 11 37 37 H 1.09004 * 109.68104 * 172.02681 * 14 13 12 38 38 H 1.08998 * 109.68320 * 292.57891 * 14 13 12 39 39 H 0.96995 * 119.99764 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6681 0.6995 -0.0031 5 6 4.7604 1.6936 -0.0084 6 8 4.5013 2.8814 -0.0149 7 7 6.0445 1.2840 -0.0059 8 6 7.1278 2.2701 -0.0117 9 6 8.4760 1.5466 -0.0080 10 1 8.5531 0.9185 0.8794 11 6 9.6134 2.5743 -0.0134 12 8 10.8589 1.8969 -0.1973 13 6 10.9715 1.2072 -1.4445 14 6 9.9036 0.1095 -1.5123 15 7 8.5952 0.7147 -1.2159 16 6 7.5209 0.5102 -2.0400 17 1 6.9381 1.3510 -2.3861 18 6 7.1808 -0.7777 -2.4304 19 7 6.2637 -0.9643 -3.3559 20 14 8.0247 -2.2461 -1.6423 21 1 7.3381 -2.5879 -0.3707 22 1 7.9625 -3.4073 -2.5659 23 1 9.4442 -1.9105 -1.3637 24 7 3.8995 -0.5859 0.0045 25 16 2.5473 -1.3666 0.0084 26 1 -0.3633 -1.0276 0.0060 27 1 -0.3633 0.5189 0.8870 28 1 -0.3634 0.5087 -0.8929 29 1 1.9808 2.0981 -0.0011 30 1 6.2512 0.3364 -0.0011 31 1 7.0507 2.8999 0.8745 32 1 7.0507 2.8894 -0.9053 33 1 9.4604 3.2824 -0.8279 34 1 9.6257 3.1088 0.9363 35 1 10.8235 1.9103 -2.2640 36 1 11.9613 0.7576 -1.5238 37 1 9.8885 -0.3268 -2.5111 38 1 10.1248 -0.6638 -0.7766 39 1 6.0263 -1.8643 -3.6289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001050888896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:04 Heat of formation + Delta-G solvation = -2.247680 kcal Electronic energy + Delta-G solvation = -24425.506474 eV Core-core repulsion = 20882.327331 eV Total energy + Delta-G solvation = -3543.179143 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -39.96129 -38.83465 -37.71127 -35.36578 -33.62540 -33.05621 -31.70378 -30.94247 -28.04442 -27.55988 -26.34441 -24.26129 -23.28992 -22.11624 -20.51165 -19.98779 -19.43752 -17.91639 -17.17821 -16.43382 -15.92996 -15.77396 -15.23838 -14.91333 -14.75194 -14.43121 -14.17091 -13.95790 -13.73006 -13.45307 -13.00531 -12.85786 -12.81004 -12.61546 -12.46201 -12.04809 -11.85395 -11.52497 -10.91064 -10.87935 -10.80207 -10.76215 -10.61298 -10.21124 -9.87733 -9.57135 -9.45432 -9.26489 -9.11157 -8.60135 -8.49347 -8.16386 -6.67756 -6.04647 -3.68824 0.90979 1.65562 2.12909 2.14286 3.30374 3.39607 3.43914 3.70707 3.92137 4.33818 4.46317 4.74085 4.80707 5.11978 5.23379 5.39995 5.42799 5.44262 5.51188 5.61211 5.71702 5.76617 5.86453 5.93715 5.95025 5.96823 6.04849 6.08108 6.17021 6.29452 6.45296 6.64381 6.68738 6.79435 7.15878 7.64125 8.00301 8.29073 8.35176 8.82415 8.84916 9.57554 10.03468 11.07846 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.005152 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.403374 B = 5433.485821 C = 6536.246172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 C -0.259 4.259 3 C -0.141 4.141 4 C 0.066 3.934 5 C 0.587 3.413 6 O -0.557 6.557 7 N -0.667 5.667 8 C 0.139 3.861 9 C 0.123 3.877 10 H 0.044 0.956 11 C 0.056 3.944 12 O -0.389 6.389 13 C 0.043 3.957 14 C 0.102 3.898 15 N -0.605 5.605 16 C -0.273 4.273 17 H 0.077 0.923 18 C 0.054 3.946 19 N -0.894 5.894 20 Si 0.847 3.153 21 H -0.282 1.282 22 H -0.300 1.300 23 H -0.237 1.237 24 N -0.497 5.497 25 S 0.444 5.556 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.077 0.923 29 H 0.167 0.833 30 H 0.419 0.581 31 H 0.062 0.938 32 H 0.072 0.928 33 H 0.051 0.949 34 H 0.087 0.913 35 H 0.048 0.952 36 H 0.082 0.918 37 H 0.073 0.927 38 H 0.042 0.958 39 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.624 0.423 7.708 9.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.389 4.389 3 C -0.174 4.174 4 C -0.109 4.109 5 C 0.368 3.632 6 O -0.436 6.436 7 N -0.317 5.317 8 C 0.014 3.986 9 C 0.016 3.984 10 H 0.062 0.938 11 C -0.023 4.023 12 O -0.308 6.308 13 C -0.036 4.036 14 C -0.022 4.022 15 N -0.333 5.333 16 C -0.401 4.401 17 H 0.094 0.906 18 C -0.149 4.149 19 N -0.533 5.533 20 Si 0.675 3.325 21 H -0.208 1.208 22 H -0.227 1.227 23 H -0.162 1.162 24 N -0.330 5.330 25 S 0.598 5.402 26 H 0.088 0.912 27 H 0.095 0.905 28 H 0.096 0.904 29 H 0.184 0.816 30 H 0.258 0.742 31 H 0.080 0.920 32 H 0.090 0.910 33 H 0.070 0.930 34 H 0.105 0.895 35 H 0.067 0.933 36 H 0.100 0.900 37 H 0.092 0.908 38 H 0.059 0.941 39 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -4.960 -0.887 7.726 9.224 hybrid contribution -0.133 0.423 -0.181 0.479 sum -5.094 -0.464 7.544 9.115 Atomic orbital electron populations 1.20135 0.86510 1.02926 1.03155 1.26025 1.02960 1.00440 1.09519 1.21175 0.90493 1.01597 1.04114 1.21113 0.94926 0.89328 1.05503 1.17145 0.82220 0.86440 0.77429 1.90720 1.83870 1.16128 1.52913 1.45732 1.03862 1.12026 1.70068 1.21148 0.85234 0.90947 1.01242 1.21568 0.92639 0.92916 0.91250 0.93810 1.22880 0.84510 0.93892 1.01006 1.87818 1.35521 1.69015 1.38417 1.23152 0.99394 0.95257 0.85750 1.22367 0.85774 0.93905 1.00199 1.44344 1.06592 1.58631 1.23703 1.18593 1.05667 0.92497 1.23377 0.90588 1.25697 0.94990 0.97709 0.96504 1.69777 1.31910 1.21812 1.29786 0.87656 0.82664 0.82713 0.79458 1.20835 1.22679 1.16224 1.72399 1.27738 1.10780 1.22077 1.80371 0.88172 1.13138 1.58495 0.91152 0.90508 0.90415 0.81576 0.74206 0.92018 0.91016 0.93028 0.89490 0.93345 0.89982 0.90826 0.94082 0.92698 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.62 10.46 36.01 0.38 -0.24 16 2 C -0.26 -3.47 6.58 -35.45 -0.23 -3.71 16 3 C -0.14 -2.29 9.93 -40.27 -0.40 -2.69 16 4 C 0.07 1.30 6.66 -84.06 -0.56 0.74 16 5 C 0.59 12.62 7.81 -12.40 -0.10 12.52 16 6 O -0.56 -12.62 16.66 5.30 0.09 -12.54 16 7 N -0.67 -14.21 4.12 -61.30 -0.25 -14.47 16 8 C 0.14 2.67 4.51 -4.04 -0.02 2.65 16 9 C 0.12 2.34 3.20 -67.42 -0.22 2.13 16 10 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 11 C 0.06 0.94 6.29 37.31 0.23 1.17 16 12 O -0.39 -7.02 10.74 -35.23 -0.38 -7.40 16 13 C 0.04 0.74 6.99 37.31 0.26 1.00 16 14 C 0.10 2.10 4.27 -3.52 -0.02 2.08 16 15 N -0.61 -13.43 2.45 -164.29 -0.40 -13.83 16 16 C -0.27 -7.04 6.66 -15.06 -0.10 -7.14 16 17 H 0.08 2.23 7.11 -52.48 -0.37 1.86 16 18 C 0.05 1.46 5.36 -17.43 -0.09 1.37 16 19 N -0.89 -25.99 13.97 55.49 0.78 -25.22 16 20 Si 0.85 20.41 26.73 -169.99 -4.54 15.87 16 21 H -0.28 -7.00 7.11 56.52 0.40 -6.59 16 22 H -0.30 -7.49 7.11 56.52 0.40 -7.09 16 23 H -0.24 -5.24 3.87 56.52 0.22 -5.02 16 24 N -0.50 -9.75 10.71 24.84 0.27 -9.48 16 25 S 0.44 6.55 23.20 -107.50 -2.49 4.05 16 26 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 28 H 0.08 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.17 2.50 7.99 -52.49 -0.42 2.08 16 30 H 0.42 9.58 6.80 -40.82 -0.28 9.30 16 31 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 32 H 0.07 1.50 7.56 -51.93 -0.39 1.11 16 33 H 0.05 0.87 8.14 -51.93 -0.42 0.44 16 34 H 0.09 1.21 8.14 -51.93 -0.42 0.79 16 35 H 0.05 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.08 1.23 8.14 -51.93 -0.42 0.80 16 37 H 0.07 1.57 6.86 -51.93 -0.36 1.22 16 38 H 0.04 0.86 6.13 -51.93 -0.32 0.54 16 39 H 0.26 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 329.38 15.07 4.96 4.96 Total: -1.00 -31.60 329.38 -8.10 -39.70 By element: Atomic # 1 Polarization: 13.72 SS G_CDS: -5.26 Total: 8.46 kcal Atomic # 6 Polarization: 10.75 SS G_CDS: -0.86 Total: 9.89 kcal Atomic # 7 Polarization: -63.39 SS G_CDS: 0.39 Total: -63.00 kcal Atomic # 8 Polarization: -19.64 SS G_CDS: -0.29 Total: -19.93 kcal Atomic # 14 Polarization: 20.41 SS G_CDS: -4.54 Total: 15.87 kcal Atomic # 16 Polarization: 6.55 SS G_CDS: -2.49 Total: 4.05 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -31.60 -8.10 -39.70 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050888896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.454 kcal (2) G-P(sol) polarization free energy of solvation -31.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 5.851 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.099 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.701 kcal (6) G-S(sol) free energy of system = (1) + (5) -2.248 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds