Wall clock time and date at job start Tue Mar 31 2020 09:36:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.35008 * 127.27316 * 2 1 4 4 C 1.39476 * 111.68163 * 180.13656 * 3 2 1 5 5 C 1.47698 * 122.10360 * 179.78769 * 4 3 2 6 6 O 1.21578 * 119.99798 * 359.73975 * 5 4 3 7 7 N 1.34776 * 120.00437 * 179.73999 * 5 4 3 8 8 C 1.46490 * 120.00069 * 179.97438 * 7 5 4 9 9 C 1.53007 * 109.47220 * 180.02562 * 8 7 5 10 10 H 1.09001 * 109.67694 * 300.54121 * 9 8 7 11 11 C 1.53293 * 109.68149 * 180.02562 * 9 8 7 12 12 O 1.42966 * 109.21810 * 187.97537 * 11 9 8 13 13 C 1.42961 * 114.16765 * 62.58154 * 12 11 9 14 14 C 1.53294 * 109.21980 * 297.41519 * 13 12 11 15 15 N 1.47151 * 109.67761 * 61.05336 * 9 8 7 16 16 C 1.36933 * 120.98778 * 350.23868 * 15 9 8 17 17 H 1.08006 * 119.99869 * 49.90240 * 16 15 9 18 18 C 1.38808 * 120.00112 * 229.90632 * 16 15 9 19 19 N 1.31624 * 120.00067 * 188.89590 * 18 16 15 20 20 Si 1.86804 * 120.00148 * 8.89418 * 18 16 15 21 21 H 1.48500 * 109.46777 * 84.33063 * 20 18 16 22 22 H 1.48497 * 109.47176 * 204.32601 * 20 18 16 23 23 H 1.48496 * 109.46974 * 324.33075 * 20 18 16 24 24 N 1.30604 * 115.79536 * 359.51920 * 4 3 2 25 25 S 1.56142 * 109.79654 * 0.26798 * 24 4 3 26 26 H 1.09000 * 109.47049 * 180.33296 * 1 2 3 27 27 H 1.08999 * 109.46768 * 300.32965 * 1 2 3 28 28 H 1.08998 * 109.47425 * 60.33001 * 1 2 3 29 29 H 1.07995 * 124.15641 * 359.92757 * 3 2 1 30 30 H 0.96997 * 119.99709 * 0.02562 * 7 5 4 31 31 H 1.08996 * 109.47383 * 60.00133 * 8 7 5 32 32 H 1.08996 * 109.47411 * 299.99954 * 8 7 5 33 33 H 1.09001 * 109.51287 * 307.89677 * 11 9 8 34 34 H 1.08994 * 109.51415 * 68.00345 * 11 9 8 35 35 H 1.08997 * 109.51337 * 57.34549 * 13 12 11 36 36 H 1.09002 * 109.51081 * 177.49233 * 13 12 11 37 37 H 1.09004 * 109.68104 * 172.02681 * 14 13 12 38 38 H 1.08998 * 109.68320 * 292.57891 * 14 13 12 39 39 H 0.96995 * 119.99764 * 179.97438 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3247 1.0743 0.0000 4 6 3.6681 0.6995 -0.0031 5 6 4.7604 1.6936 -0.0084 6 8 4.5013 2.8814 -0.0149 7 7 6.0445 1.2840 -0.0059 8 6 7.1278 2.2701 -0.0117 9 6 8.4760 1.5466 -0.0080 10 1 8.5531 0.9185 0.8794 11 6 9.6134 2.5743 -0.0134 12 8 10.8589 1.8969 -0.1973 13 6 10.9715 1.2072 -1.4445 14 6 9.9036 0.1095 -1.5123 15 7 8.5952 0.7147 -1.2159 16 6 7.5209 0.5102 -2.0400 17 1 6.9381 1.3510 -2.3861 18 6 7.1808 -0.7777 -2.4304 19 7 6.2637 -0.9643 -3.3559 20 14 8.0247 -2.2461 -1.6423 21 1 7.3381 -2.5879 -0.3707 22 1 7.9625 -3.4073 -2.5659 23 1 9.4442 -1.9105 -1.3637 24 7 3.8995 -0.5859 0.0045 25 16 2.5473 -1.3666 0.0084 26 1 -0.3633 -1.0276 0.0060 27 1 -0.3633 0.5189 0.8870 28 1 -0.3634 0.5087 -0.8929 29 1 1.9808 2.0981 -0.0011 30 1 6.2512 0.3364 -0.0011 31 1 7.0507 2.8999 0.8745 32 1 7.0507 2.8894 -0.9053 33 1 9.4604 3.2824 -0.8279 34 1 9.6257 3.1088 0.9363 35 1 10.8235 1.9103 -2.2640 36 1 11.9613 0.7576 -1.5238 37 1 9.8885 -0.3268 -2.5111 38 1 10.1248 -0.6638 -0.7766 39 1 6.0263 -1.8643 -3.6289 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001050888896.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:36:03 Heat of formation + Delta-G solvation = -25.674404 kcal Electronic energy + Delta-G solvation = -24426.522333 eV Core-core repulsion = 20882.327331 eV Total energy + Delta-G solvation = -3544.195002 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.44490 -40.33284 -39.21969 -36.99789 -35.32583 -34.24926 -33.60487 -32.50679 -29.32156 -29.12772 -27.80421 -25.64579 -25.10574 -23.63023 -21.85917 -21.63502 -20.93868 -19.27326 -18.82659 -18.09678 -17.54879 -17.30054 -16.86675 -16.45695 -16.27505 -15.97238 -15.68701 -15.44933 -15.13781 -14.89726 -14.57526 -14.41037 -13.99378 -13.90342 -13.68448 -13.49230 -13.44834 -13.09626 -12.82219 -12.46512 -12.29408 -12.24261 -12.09868 -11.80136 -11.40480 -11.35773 -11.08521 -10.78184 -10.43584 -10.42959 -10.03924 -9.66074 -8.51643 -8.14625 -5.76391 -0.38375 0.48832 0.76271 0.84646 1.35956 1.43709 1.46920 2.14233 2.37258 2.44759 2.92862 3.11958 3.20080 3.65899 3.90898 3.94617 4.16338 4.21712 4.24860 4.34107 4.38957 4.44112 4.56265 4.59231 4.70424 4.74244 4.78597 4.80423 4.91509 4.96644 5.02837 5.19134 5.22080 5.34021 5.54953 5.95798 6.23116 6.26883 6.58509 6.92438 7.16374 7.53721 8.04767 9.01129 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.017713 B = 0.005152 C = 0.004283 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1580.403374 B = 5433.485821 C = 6536.246172 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.071 4.071 2 C -0.230 4.230 3 C -0.164 4.164 4 C 0.039 3.961 5 C 0.578 3.422 6 O -0.579 6.579 7 N -0.673 5.673 8 C 0.140 3.860 9 C 0.123 3.877 10 H 0.051 0.949 11 C 0.061 3.939 12 O -0.391 6.391 13 C 0.050 3.950 14 C 0.096 3.904 15 N -0.618 5.618 16 C -0.242 4.242 17 H 0.031 0.969 18 C 0.009 3.991 19 N -0.940 5.940 20 Si 0.894 3.106 21 H -0.292 1.292 22 H -0.312 1.312 23 H -0.201 1.201 24 N -0.552 5.552 25 S 0.492 5.508 26 H 0.094 0.906 27 H 0.098 0.902 28 H 0.089 0.911 29 H 0.173 0.827 30 H 0.411 0.589 31 H 0.089 0.911 32 H 0.047 0.953 33 H 0.049 0.951 34 H 0.123 0.877 35 H 0.046 0.954 36 H 0.116 0.884 37 H 0.061 0.939 38 H 0.045 0.955 39 H 0.258 0.742 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.396 0.085 9.291 10.745 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.361 4.361 3 C -0.196 4.196 4 C -0.134 4.134 5 C 0.360 3.640 6 O -0.460 6.460 7 N -0.321 5.321 8 C 0.016 3.984 9 C 0.017 3.983 10 H 0.069 0.931 11 C -0.017 4.017 12 O -0.309 6.309 13 C -0.027 4.027 14 C -0.028 4.028 15 N -0.346 5.346 16 C -0.372 4.372 17 H 0.049 0.951 18 C -0.190 4.190 19 N -0.583 5.583 20 Si 0.723 3.277 21 H -0.219 1.219 22 H -0.240 1.240 23 H -0.125 1.125 24 N -0.387 5.387 25 S 0.647 5.353 26 H 0.113 0.887 27 H 0.117 0.883 28 H 0.108 0.892 29 H 0.190 0.810 30 H 0.248 0.752 31 H 0.107 0.893 32 H 0.066 0.934 33 H 0.067 0.933 34 H 0.141 0.859 35 H 0.064 0.936 36 H 0.134 0.866 37 H 0.080 0.920 38 H 0.063 0.937 39 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges -4.684 -1.186 9.335 10.511 hybrid contribution -0.313 0.552 -0.671 0.923 sum -4.997 -0.635 8.664 10.022 Atomic orbital electron populations 1.20413 0.82808 1.05083 1.04687 1.26561 1.04984 0.98676 1.05873 1.21255 0.89621 1.02795 1.05900 1.21110 0.95519 0.89181 1.07587 1.17578 0.82810 0.86809 0.76765 1.90674 1.84298 1.17037 1.54028 1.45810 1.04490 1.11756 1.70066 1.21225 0.85174 0.90728 1.01281 1.21723 0.93476 0.93181 0.89912 0.93119 1.22942 0.82986 0.92902 1.02908 1.87833 1.35687 1.68921 1.38453 1.23113 0.99797 0.94134 0.85695 1.22415 0.85681 0.95137 0.99552 1.44450 1.06548 1.59176 1.24411 1.18152 1.05675 0.90842 1.22500 0.95131 1.26179 0.95784 0.99965 0.97032 1.69916 1.34461 1.21798 1.32103 0.86912 0.83864 0.79323 0.77633 1.21895 1.24049 1.12453 1.72101 1.31586 1.11194 1.23825 1.80009 0.86492 1.12223 1.56587 0.88739 0.88337 0.89209 0.80955 0.75192 0.89322 0.93450 0.93269 0.85896 0.93560 0.86633 0.92026 0.93719 0.93276 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.03 10.46 71.24 0.75 -0.29 16 2 C -0.23 -5.78 6.58 24.94 0.16 -5.61 16 3 C -0.16 -5.32 9.93 21.82 0.22 -5.10 16 4 C 0.04 1.58 6.66 42.13 0.28 1.86 16 5 C 0.58 25.94 7.81 86.74 0.68 26.62 16 6 O -0.58 -27.26 16.66 -3.96 -0.07 -27.33 16 7 N -0.67 -29.70 4.12 -466.13 -1.92 -31.62 16 8 C 0.14 5.44 4.51 86.38 0.39 5.83 16 9 C 0.12 4.55 3.20 44.97 0.14 4.70 16 10 H 0.05 1.86 8.14 -2.39 -0.02 1.85 16 11 C 0.06 1.89 6.29 72.08 0.45 2.34 16 12 O -0.39 -12.76 10.74 -148.98 -1.60 -14.36 16 13 C 0.05 1.62 6.99 72.08 0.50 2.12 16 14 C 0.10 3.76 4.27 86.35 0.37 4.13 16 15 N -0.62 -27.19 2.45 -673.68 -1.65 -28.84 16 16 C -0.24 -12.85 6.66 84.03 0.56 -12.29 16 17 H 0.03 1.92 7.11 -2.91 -0.02 1.90 16 18 C 0.01 0.50 5.36 84.86 0.45 0.95 16 19 N -0.94 -56.94 13.97 21.65 0.30 -56.63 16 20 Si 0.89 42.53 26.73 68.60 1.83 44.36 16 21 H -0.29 -14.29 7.11 99.48 0.71 -13.58 16 22 H -0.31 -15.45 7.11 99.48 0.71 -14.74 16 23 H -0.20 -8.33 3.87 99.48 0.39 -7.94 16 24 N -0.55 -22.20 10.71 -75.34 -0.81 -23.01 16 25 S 0.49 14.12 23.20 -56.49 -1.31 12.81 16 26 H 0.09 0.97 8.14 -2.39 -0.02 0.95 16 27 H 0.10 1.11 8.14 -2.39 -0.02 1.09 16 28 H 0.09 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.17 5.23 7.99 -2.91 -0.02 5.20 16 30 H 0.41 19.46 6.80 -92.71 -0.63 18.83 16 31 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 32 H 0.05 2.06 7.56 -2.39 -0.02 2.05 16 33 H 0.05 1.56 8.14 -2.39 -0.02 1.54 16 34 H 0.12 2.95 8.14 -2.39 -0.02 2.93 16 35 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 36 H 0.12 2.97 8.14 -2.39 -0.02 2.95 16 37 H 0.06 2.55 6.86 -2.38 -0.02 2.53 16 38 H 0.05 1.74 6.13 -2.39 -0.01 1.72 16 39 H 0.26 15.15 8.31 -92.71 -0.77 14.38 16 Total: -1.00 -71.98 329.38 -0.13 -72.11 By element: Atomic # 1 Polarization: 27.11 SS G_CDS: 0.13 Total: 27.24 kcal Atomic # 6 Polarization: 20.30 SS G_CDS: 4.96 Total: 25.26 kcal Atomic # 7 Polarization: -136.02 SS G_CDS: -4.07 Total: -140.10 kcal Atomic # 8 Polarization: -40.02 SS G_CDS: -1.67 Total: -41.68 kcal Atomic # 14 Polarization: 42.53 SS G_CDS: 1.83 Total: 44.36 kcal Atomic # 16 Polarization: 14.12 SS G_CDS: -1.31 Total: 12.81 kcal Total: -71.98 -0.13 -72.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001050888896.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.434 kcal (2) G-P(sol) polarization free energy of solvation -71.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.545 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.129 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.108 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.674 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds