Wall clock time and date at job start Tue Mar 31 2020 09:49:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28652 * 124.72223 * 2 1 4 4 C 1.33556 * 115.76990 * 180.15523 * 3 2 1 5 5 C 1.47264 * 123.14204 * 179.83421 * 4 3 2 6 6 O 1.21632 * 120.00067 * 179.70946 * 5 4 3 7 7 N 1.34774 * 120.00049 * 359.69853 * 5 4 3 8 8 C 1.46496 * 120.00320 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47512 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.70827 * 59.88500 * 9 8 7 11 11 C 1.53294 * 109.68295 * 180.41362 * 9 8 7 12 12 O 1.42968 * 109.22219 * 172.02600 * 11 9 8 13 13 C 1.42959 * 114.16645 * 297.42051 * 12 11 9 14 14 C 1.53292 * 109.22031 * 62.58403 * 13 12 11 15 15 N 1.47151 * 108.38647 * 307.69259 * 14 13 12 16 16 C 1.36937 * 120.98607 * 230.56346 * 15 14 13 17 17 H 1.07997 * 120.00397 * 148.29095 * 16 15 14 18 18 C 1.38814 * 119.99639 * 328.28585 * 16 15 14 19 19 N 1.31617 * 120.00357 * 349.28576 * 18 16 15 20 20 Si 1.86802 * 119.99667 * 169.28091 * 18 16 15 21 21 H 1.48493 * 109.47281 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46836 * 120.00641 * 20 18 16 23 23 H 1.48496 * 109.47297 * 240.00070 * 20 18 16 24 24 C 1.35208 * 113.71511 * 359.56037 * 4 3 2 25 25 S 1.70773 * 124.72126 * 179.69547 * 2 1 3 26 26 H 1.09001 * 109.47199 * 180.27977 * 1 2 3 27 27 H 1.08997 * 109.47316 * 300.28085 * 1 2 3 28 28 H 1.09007 * 109.47288 * 60.28439 * 1 2 3 29 29 H 0.97005 * 120.00309 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47021 * 60.00023 * 8 7 5 31 31 H 1.08999 * 109.47337 * 300.00394 * 8 7 5 32 32 H 1.08995 * 109.51978 * 291.95497 * 11 9 8 33 33 H 1.09002 * 109.51225 * 52.10730 * 11 9 8 34 34 H 1.09002 * 109.51432 * 302.65709 * 13 12 11 35 35 H 1.09006 * 109.55372 * 182.52917 * 13 12 11 36 36 H 1.09010 * 109.68210 * 187.97428 * 14 13 12 37 37 H 1.08999 * 109.71750 * 67.43862 * 14 13 12 38 38 H 0.96996 * 120.00394 * 179.97438 * 19 18 16 39 39 H 1.08003 * 125.58410 * 180.23478 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5590 0.8496 -0.0033 5 6 4.5462 1.9424 -0.0073 6 8 5.7355 1.6875 -0.0048 7 7 4.1319 3.2248 -0.0141 8 6 5.1138 4.3119 -0.0187 9 6 4.3854 5.6573 -0.0253 10 1 3.7572 5.7395 0.8616 11 6 5.4088 6.7985 -0.0406 12 8 4.7266 8.0400 -0.2340 13 6 4.0355 8.1399 -1.4814 14 6 2.9418 7.0675 -1.5398 15 7 3.5528 5.7642 -1.2340 16 6 3.3531 4.6830 -2.0502 17 1 4.1262 3.9364 -2.1564 18 6 2.1568 4.5465 -2.7410 19 7 1.1393 5.3313 -2.4565 20 14 1.9913 3.2490 -4.0746 21 1 3.2687 2.5023 -4.2001 22 1 0.9008 2.3068 -3.7158 23 1 1.6723 3.9059 -5.3676 24 6 3.9036 -0.4578 0.0035 25 16 2.4797 -1.4036 0.0075 26 1 -0.3634 -1.0277 0.0050 27 1 -0.3634 0.5182 0.8874 28 1 -0.3634 0.5094 -0.8926 29 1 3.1834 3.4281 -0.0158 30 1 5.7394 4.2327 -0.9078 31 1 5.7380 4.2415 0.8721 32 1 5.9434 6.8209 0.9089 33 1 6.1168 6.6417 -0.8543 34 1 4.7386 7.9879 -2.3004 35 1 3.5822 9.1274 -1.5693 36 1 2.5048 7.0427 -2.5382 37 1 2.1677 7.2913 -0.8058 38 1 0.3035 5.2362 -2.9394 39 1 4.9131 -0.8417 0.0059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001051080593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:26 Heat of formation + Delta-G solvation = -6.999810 kcal Electronic energy + Delta-G solvation = -24469.222228 eV Core-core repulsion = 20925.837017 eV Total energy + Delta-G solvation = -3543.385211 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -40.17788 -38.76662 -37.96562 -35.31390 -33.54939 -32.25060 -31.47462 -30.40495 -28.24196 -27.26064 -26.24378 -24.02268 -23.41121 -21.73991 -20.94633 -19.71438 -19.43864 -18.33442 -16.85906 -16.13942 -15.85235 -15.64689 -15.13251 -15.03834 -14.56189 -14.46651 -14.21659 -13.84658 -13.64995 -13.50632 -13.26420 -12.90349 -12.64911 -12.44143 -12.19967 -11.87626 -11.81177 -11.53078 -11.03017 -10.86938 -10.72294 -10.39075 -10.21764 -10.03113 -9.78970 -9.64618 -9.58295 -9.52914 -8.96942 -8.80759 -8.62103 -8.22317 -6.68004 -5.86809 -3.35987 0.65486 1.31197 1.68014 2.26779 3.29534 3.37772 3.41657 3.71110 3.84912 4.19212 4.38948 4.55381 4.99436 5.16866 5.30509 5.31964 5.34763 5.46992 5.50578 5.61577 5.74375 5.85085 5.89856 6.02283 6.05988 6.15468 6.16996 6.24645 6.35290 6.54127 6.77304 7.08002 7.09132 7.50999 7.61784 7.75049 7.88397 8.26045 8.33607 8.78006 9.10059 9.70093 10.29047 11.20156 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.005362 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.874561 B = 5221.110269 C = 6309.545286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.075 4.075 2 C 0.031 3.969 3 N -0.430 5.430 4 C 0.027 3.973 5 C 0.583 3.417 6 O -0.560 6.560 7 N -0.672 5.672 8 C 0.134 3.866 9 C 0.124 3.876 10 H 0.042 0.958 11 C 0.057 3.943 12 O -0.392 6.392 13 C 0.035 3.965 14 C 0.145 3.855 15 N -0.590 5.590 16 C -0.254 4.254 17 H 0.071 0.929 18 C 0.017 3.983 19 N -0.897 5.897 20 Si 0.894 3.106 21 H -0.279 1.279 22 H -0.288 1.288 23 H -0.289 1.289 24 C -0.234 4.234 25 S 0.178 5.822 26 H 0.077 0.923 27 H 0.089 0.911 28 H 0.091 0.909 29 H 0.426 0.574 30 H 0.069 0.931 31 H 0.061 0.939 32 H 0.083 0.917 33 H 0.047 0.953 34 H 0.040 0.960 35 H 0.079 0.921 36 H 0.091 0.909 37 H 0.030 0.970 38 H 0.254 0.746 39 H 0.187 0.813 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.221 -8.842 5.408 10.366 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.250 4.250 3 N -0.145 5.145 4 C -0.108 4.108 5 C 0.366 3.634 6 O -0.440 6.440 7 N -0.322 5.322 8 C 0.010 3.990 9 C 0.017 3.983 10 H 0.059 0.941 11 C -0.022 4.022 12 O -0.311 6.311 13 C -0.043 4.043 14 C 0.019 3.981 15 N -0.316 5.316 16 C -0.384 4.384 17 H 0.089 0.911 18 C -0.183 4.183 19 N -0.540 5.540 20 Si 0.724 3.276 21 H -0.204 1.204 22 H -0.214 1.214 23 H -0.216 1.216 24 C -0.376 4.376 25 S 0.434 5.566 26 H 0.096 0.904 27 H 0.108 0.892 28 H 0.109 0.891 29 H 0.266 0.734 30 H 0.087 0.913 31 H 0.079 0.921 32 H 0.101 0.899 33 H 0.065 0.935 34 H 0.059 0.941 35 H 0.098 0.902 36 H 0.109 0.891 37 H 0.048 0.952 38 H 0.064 0.936 39 H 0.204 0.796 Dipole moment (debyes) X Y Z Total from point charges 0.405 -9.345 5.472 10.837 hybrid contribution 0.009 -0.047 -1.116 1.117 sum 0.413 -9.392 4.356 10.361 Atomic orbital electron populations 1.20433 0.84908 1.03173 1.05054 1.27163 1.02277 0.91037 1.04481 1.66957 1.03037 1.30782 1.13723 1.20572 0.90033 0.93566 1.06676 1.17041 0.86439 0.82355 0.77600 1.90745 1.16000 1.84206 1.53075 1.45903 1.12560 1.03829 1.69924 1.21239 0.91074 0.85636 1.01098 1.21432 0.92945 0.91927 0.91971 0.94070 1.22858 0.93834 0.85086 1.00450 1.87798 1.68924 1.35424 1.38950 1.23352 0.95671 1.00248 0.85032 1.21401 0.91698 0.82788 1.02190 1.44074 1.57494 1.07269 1.22764 1.19197 0.97654 1.01473 1.20041 0.91112 1.25074 0.94996 0.97961 1.00247 1.69980 1.02261 1.40114 1.41671 0.86342 0.77803 0.81643 0.81854 1.20385 1.21444 1.21564 1.26479 1.05494 0.96769 1.08832 1.82622 0.95394 1.12528 1.66097 0.90417 0.89200 0.89078 0.73444 0.91257 0.92073 0.89895 0.93476 0.94124 0.90250 0.89061 0.95238 0.93594 0.79617 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.82 10.47 36.00 0.38 -0.45 16 2 C 0.03 0.44 7.34 -13.61 -0.10 0.34 16 3 N -0.43 -7.86 10.12 -8.51 -0.09 -7.95 16 4 C 0.03 0.49 6.70 -84.53 -0.57 -0.08 16 5 C 0.58 12.04 7.80 -12.59 -0.10 11.94 16 6 O -0.56 -12.32 16.71 5.25 0.09 -12.24 16 7 N -0.67 -13.96 3.78 -61.44 -0.23 -14.19 16 8 C 0.13 2.60 4.45 -4.05 -0.02 2.58 16 9 C 0.12 2.52 3.21 -67.43 -0.22 2.30 16 10 H 0.04 0.87 8.14 -51.93 -0.42 0.45 16 11 C 0.06 1.02 6.29 37.31 0.23 1.26 16 12 O -0.39 -7.74 10.74 -35.23 -0.38 -8.12 16 13 C 0.03 0.68 6.98 37.31 0.26 0.94 16 14 C 0.14 3.34 5.37 -3.54 -0.02 3.32 16 15 N -0.59 -13.96 3.03 -164.30 -0.50 -14.46 16 16 C -0.25 -6.53 7.04 -15.06 -0.11 -6.64 16 17 H 0.07 1.88 5.84 -52.49 -0.31 1.58 16 18 C 0.02 0.45 5.06 -17.43 -0.09 0.37 16 19 N -0.90 -24.62 11.17 55.49 0.62 -24.00 16 20 Si 0.89 21.70 29.57 -169.99 -5.03 16.67 16 21 H -0.28 -6.89 7.11 56.52 0.40 -6.48 16 22 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 23 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 24 C -0.23 -3.51 10.62 29.65 0.31 -3.20 16 25 S 0.18 2.07 22.90 -107.50 -2.46 -0.39 16 26 H 0.08 0.59 8.12 -51.93 -0.42 0.17 16 27 H 0.09 0.91 8.14 -51.93 -0.42 0.49 16 28 H 0.09 1.09 8.14 -51.93 -0.42 0.67 16 29 H 0.43 9.55 6.84 -40.82 -0.28 9.27 16 30 H 0.07 1.44 7.56 -51.93 -0.39 1.04 16 31 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 32 H 0.08 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.05 0.84 8.14 -51.93 -0.42 0.42 16 34 H 0.04 0.79 8.14 -51.93 -0.42 0.36 16 35 H 0.08 1.36 8.14 -51.93 -0.42 0.94 16 36 H 0.09 2.31 6.37 -51.92 -0.33 1.98 16 37 H 0.03 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.25 6.82 8.31 -40.82 -0.34 6.48 16 39 H 0.19 2.51 8.03 -52.48 -0.42 2.09 16 LS Contribution 335.01 15.07 5.05 5.05 Total: -1.00 -30.88 335.01 -8.04 -38.92 By element: Atomic # 1 Polarization: 13.11 SS G_CDS: -5.09 Total: 8.02 kcal Atomic # 6 Polarization: 12.72 SS G_CDS: -0.03 Total: 12.69 kcal Atomic # 7 Polarization: -60.41 SS G_CDS: -0.20 Total: -60.60 kcal Atomic # 8 Polarization: -20.07 SS G_CDS: -0.29 Total: -20.36 kcal Atomic # 14 Polarization: 21.70 SS G_CDS: -5.03 Total: 16.67 kcal Atomic # 16 Polarization: 2.07 SS G_CDS: -2.46 Total: -0.39 kcal Total LS contribution 5.05 Total: 5.05 kcal Total: -30.88 -8.04 -38.92 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051080593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.920 kcal (2) G-P(sol) polarization free energy of solvation -30.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.043 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.043 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.000 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds