Wall clock time and date at job start Tue Mar 31 2020 09:49:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.28652 * 124.72223 * 2 1 4 4 C 1.33556 * 115.76990 * 180.15523 * 3 2 1 5 5 C 1.47264 * 123.14204 * 179.83421 * 4 3 2 6 6 O 1.21632 * 120.00067 * 179.70946 * 5 4 3 7 7 N 1.34774 * 120.00049 * 359.69853 * 5 4 3 8 8 C 1.46496 * 120.00320 * 180.02562 * 7 5 4 9 9 C 1.52996 * 109.47512 * 180.02562 * 8 7 5 10 10 H 1.09000 * 109.70827 * 59.88500 * 9 8 7 11 11 C 1.53294 * 109.68295 * 180.41362 * 9 8 7 12 12 O 1.42968 * 109.22219 * 172.02600 * 11 9 8 13 13 C 1.42959 * 114.16645 * 297.42051 * 12 11 9 14 14 C 1.53292 * 109.22031 * 62.58403 * 13 12 11 15 15 N 1.47151 * 108.38647 * 307.69259 * 14 13 12 16 16 C 1.36937 * 120.98607 * 230.56346 * 15 14 13 17 17 H 1.07997 * 120.00397 * 148.29095 * 16 15 14 18 18 C 1.38814 * 119.99639 * 328.28585 * 16 15 14 19 19 N 1.31617 * 120.00357 * 349.28576 * 18 16 15 20 20 Si 1.86802 * 119.99667 * 169.28091 * 18 16 15 21 21 H 1.48493 * 109.47281 * 0.02562 * 20 18 16 22 22 H 1.48507 * 109.46836 * 120.00641 * 20 18 16 23 23 H 1.48496 * 109.47297 * 240.00070 * 20 18 16 24 24 C 1.35208 * 113.71511 * 359.56037 * 4 3 2 25 25 S 1.70773 * 124.72126 * 179.69547 * 2 1 3 26 26 H 1.09001 * 109.47199 * 180.27977 * 1 2 3 27 27 H 1.08997 * 109.47316 * 300.28085 * 1 2 3 28 28 H 1.09007 * 109.47288 * 60.28439 * 1 2 3 29 29 H 0.97005 * 120.00309 * 0.02562 * 7 5 4 30 30 H 1.09007 * 109.47021 * 60.00023 * 8 7 5 31 31 H 1.08999 * 109.47337 * 300.00394 * 8 7 5 32 32 H 1.08995 * 109.51978 * 291.95497 * 11 9 8 33 33 H 1.09002 * 109.51225 * 52.10730 * 11 9 8 34 34 H 1.09002 * 109.51432 * 302.65709 * 13 12 11 35 35 H 1.09006 * 109.55372 * 182.52917 * 13 12 11 36 36 H 1.09010 * 109.68210 * 187.97428 * 14 13 12 37 37 H 1.08999 * 109.71750 * 67.43862 * 14 13 12 38 38 H 0.96996 * 120.00394 * 179.97438 * 19 18 16 39 39 H 1.08003 * 125.58410 * 180.23478 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2398 1.0574 0.0000 4 6 3.5590 0.8496 -0.0033 5 6 4.5462 1.9424 -0.0073 6 8 5.7355 1.6875 -0.0048 7 7 4.1319 3.2248 -0.0141 8 6 5.1138 4.3119 -0.0187 9 6 4.3854 5.6573 -0.0253 10 1 3.7572 5.7395 0.8616 11 6 5.4088 6.7985 -0.0406 12 8 4.7266 8.0400 -0.2340 13 6 4.0355 8.1399 -1.4814 14 6 2.9418 7.0675 -1.5398 15 7 3.5528 5.7642 -1.2340 16 6 3.3531 4.6830 -2.0502 17 1 4.1262 3.9364 -2.1564 18 6 2.1568 4.5465 -2.7410 19 7 1.1393 5.3313 -2.4565 20 14 1.9913 3.2490 -4.0746 21 1 3.2687 2.5023 -4.2001 22 1 0.9008 2.3068 -3.7158 23 1 1.6723 3.9059 -5.3676 24 6 3.9036 -0.4578 0.0035 25 16 2.4797 -1.4036 0.0075 26 1 -0.3634 -1.0277 0.0050 27 1 -0.3634 0.5182 0.8874 28 1 -0.3634 0.5094 -0.8926 29 1 3.1834 3.4281 -0.0158 30 1 5.7394 4.2327 -0.9078 31 1 5.7380 4.2415 0.8721 32 1 5.9434 6.8209 0.9089 33 1 6.1168 6.6417 -0.8543 34 1 4.7386 7.9879 -2.3004 35 1 3.5822 9.1274 -1.5693 36 1 2.5048 7.0427 -2.5382 37 1 2.1677 7.2913 -0.8058 38 1 0.3035 5.2362 -2.9394 39 1 4.9131 -0.8417 0.0059 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001051080593.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:49:25 Heat of formation + Delta-G solvation = -29.169278 kcal Electronic energy + Delta-G solvation = -24470.183568 eV Core-core repulsion = 20925.837017 eV Total energy + Delta-G solvation = -3544.346551 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.52837 -40.31568 -39.47965 -36.98231 -35.34198 -33.45392 -33.12893 -32.14310 -29.33311 -29.06244 -27.75539 -25.45739 -25.18305 -23.32421 -22.29271 -21.42458 -20.76907 -19.71030 -18.56201 -17.72423 -17.49036 -17.14193 -16.55814 -16.48618 -16.26957 -15.92200 -15.78744 -15.39259 -15.18575 -15.02788 -14.67468 -14.35748 -14.29882 -13.68568 -13.37951 -13.12747 -13.08110 -12.98906 -12.93836 -12.77969 -12.52680 -12.17207 -12.02858 -11.88474 -11.37859 -11.23533 -10.78934 -10.66798 -10.63458 -10.57704 -10.07335 -9.72002 -8.61697 -7.89005 -5.39028 -0.50101 0.27772 0.56098 0.94991 1.33591 1.37542 1.44613 2.25129 2.38828 2.43886 3.00719 3.06307 3.28659 3.42851 3.84142 3.99495 4.10394 4.20617 4.26366 4.32528 4.47005 4.50731 4.56300 4.61349 4.64961 4.65358 4.71284 4.85418 4.99436 5.09109 5.13682 5.27741 5.47797 5.61841 5.67206 6.28700 6.35055 6.41225 6.70933 7.10502 7.17826 7.74999 8.31015 9.15878 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.005362 C = 0.004437 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.874561 B = 5221.110269 C = 6309.545286 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.006 3.994 3 N -0.476 5.476 4 C -0.013 4.013 5 C 0.579 3.421 6 O -0.583 6.583 7 N -0.679 5.679 8 C 0.138 3.862 9 C 0.125 3.875 10 H 0.034 0.966 11 C 0.060 3.940 12 O -0.396 6.396 13 C 0.047 3.953 14 C 0.150 3.850 15 N -0.604 5.604 16 C -0.240 4.240 17 H 0.061 0.939 18 C -0.023 4.023 19 N -0.921 5.921 20 Si 0.939 3.061 21 H -0.286 1.286 22 H -0.288 1.288 23 H -0.288 1.288 24 C -0.242 4.242 25 S 0.296 5.704 26 H 0.116 0.884 27 H 0.094 0.906 28 H 0.076 0.924 29 H 0.416 0.584 30 H 0.054 0.946 31 H 0.085 0.915 32 H 0.119 0.881 33 H 0.051 0.949 34 H 0.045 0.955 35 H 0.106 0.894 36 H 0.065 0.935 37 H 0.006 0.994 38 H 0.250 0.750 39 H 0.197 0.803 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.579 -10.383 5.982 11.997 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.273 4.273 3 N -0.193 5.193 4 C -0.148 4.148 5 C 0.363 3.637 6 O -0.465 6.465 7 N -0.328 5.328 8 C 0.014 3.986 9 C 0.018 3.982 10 H 0.051 0.949 11 C -0.018 4.018 12 O -0.315 6.315 13 C -0.031 4.031 14 C 0.024 3.976 15 N -0.330 5.330 16 C -0.370 4.370 17 H 0.078 0.922 18 C -0.221 4.221 19 N -0.567 5.567 20 Si 0.769 3.231 21 H -0.212 1.212 22 H -0.215 1.215 23 H -0.215 1.215 24 C -0.384 4.384 25 S 0.554 5.446 26 H 0.135 0.865 27 H 0.113 0.887 28 H 0.095 0.905 29 H 0.254 0.746 30 H 0.073 0.927 31 H 0.103 0.897 32 H 0.137 0.863 33 H 0.070 0.930 34 H 0.063 0.937 35 H 0.124 0.876 36 H 0.084 0.916 37 H 0.024 0.976 38 H 0.059 0.941 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges 0.768 -10.894 6.057 12.488 hybrid contribution -0.098 0.287 -1.232 1.269 sum 0.670 -10.607 4.825 11.672 Atomic orbital electron populations 1.20600 0.82899 1.05580 1.04543 1.27772 1.03894 0.92078 1.03587 1.66935 1.03265 1.33331 1.15719 1.20353 0.90171 0.93940 1.10365 1.17441 0.86803 0.82762 0.76684 1.90703 1.16946 1.84583 1.54287 1.45952 1.12072 1.04482 1.70258 1.21239 0.90800 0.85045 1.01467 1.21570 0.92972 0.93528 0.90096 0.94875 1.22967 0.92952 0.83328 1.02595 1.87803 1.68836 1.36031 1.38823 1.23213 0.94476 1.00074 0.85316 1.21243 0.92508 0.83929 0.99901 1.44269 1.57806 1.07069 1.23858 1.19165 0.96929 1.01373 1.19564 0.92157 1.25509 0.95099 0.99463 1.01980 1.70083 1.02446 1.41437 1.42698 0.85637 0.77092 0.80069 0.80282 1.21173 1.21461 1.21497 1.26864 1.08052 0.96645 1.06874 1.82138 0.91274 1.08468 1.62752 0.86533 0.88749 0.90536 0.74564 0.92731 0.89669 0.86269 0.93036 0.93702 0.87608 0.91623 0.97601 0.94058 0.78544 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.53 10.47 71.23 0.75 -0.78 16 2 C 0.01 0.15 7.34 88.57 0.65 0.80 16 3 N -0.48 -17.48 10.12 -180.84 -1.83 -19.31 16 4 C -0.01 -0.49 6.70 40.56 0.27 -0.22 16 5 C 0.58 24.35 7.80 86.62 0.68 25.02 16 6 O -0.58 -25.94 16.71 -4.13 -0.07 -26.01 16 7 N -0.68 -28.90 3.78 -466.53 -1.76 -30.67 16 8 C 0.14 5.39 4.45 86.38 0.38 5.77 16 9 C 0.12 5.02 3.21 44.96 0.14 5.16 16 10 H 0.03 1.41 8.14 -2.39 -0.02 1.39 16 11 C 0.06 2.05 6.29 72.08 0.45 2.50 16 12 O -0.40 -14.86 10.74 -148.98 -1.60 -16.46 16 13 C 0.05 1.78 6.98 72.08 0.50 2.28 16 14 C 0.15 7.02 5.37 86.35 0.46 7.48 16 15 N -0.60 -28.98 3.03 -673.74 -2.04 -31.02 16 16 C -0.24 -12.60 7.04 84.03 0.59 -12.01 16 17 H 0.06 3.29 5.84 -2.91 -0.02 3.27 16 18 C -0.02 -1.27 5.06 84.86 0.43 -0.84 16 19 N -0.92 -52.01 11.17 21.65 0.24 -51.77 16 20 Si 0.94 45.49 29.57 68.60 2.03 47.52 16 21 H -0.29 -14.05 7.11 99.48 0.71 -13.35 16 22 H -0.29 -13.82 7.11 99.48 0.71 -13.11 16 23 H -0.29 -13.79 7.11 99.48 0.71 -13.09 16 24 C -0.24 -6.91 10.62 67.12 0.71 -6.20 16 25 S 0.30 5.96 22.90 -56.49 -1.29 4.67 16 26 H 0.12 1.35 8.12 -2.39 -0.02 1.33 16 27 H 0.09 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.08 1.78 8.14 -2.38 -0.02 1.76 16 29 H 0.42 19.38 6.84 -92.70 -0.63 18.75 16 30 H 0.05 2.28 7.56 -2.38 -0.02 2.26 16 31 H 0.09 2.88 8.14 -2.39 -0.02 2.86 16 32 H 0.12 3.22 8.14 -2.39 -0.02 3.21 16 33 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.11 3.44 8.14 -2.38 -0.02 3.42 16 36 H 0.07 3.41 6.37 -2.38 -0.02 3.39 16 37 H 0.01 0.30 8.14 -2.39 -0.02 0.28 16 38 H 0.25 13.80 8.31 -92.71 -0.77 13.03 16 39 H 0.20 5.01 8.03 -2.91 -0.02 4.98 16 Total: -1.00 -68.68 335.01 0.15 -68.54 By element: Atomic # 1 Polarization: 25.09 SS G_CDS: 0.45 Total: 25.53 kcal Atomic # 6 Polarization: 22.95 SS G_CDS: 6.02 Total: 28.97 kcal Atomic # 7 Polarization: -127.37 SS G_CDS: -5.39 Total: -132.76 kcal Atomic # 8 Polarization: -40.80 SS G_CDS: -1.67 Total: -42.47 kcal Atomic # 14 Polarization: 45.49 SS G_CDS: 2.03 Total: 47.52 kcal Atomic # 16 Polarization: 5.96 SS G_CDS: -1.29 Total: 4.67 kcal Total: -68.68 0.15 -68.54 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001051080593.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.366 kcal (2) G-P(sol) polarization free energy of solvation -68.681 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.146 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.536 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.169 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds