Wall clock time and date at job start Tue Mar 31 2020 09:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28652 * 124.71801 * 2 1 4 4 C 1.33558 * 115.76402 * 179.97438 * 3 2 1 5 5 C 1.47262 * 123.14361 * 180.02562 * 4 3 2 6 6 O 1.21629 * 120.00900 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99848 * 0.02562 * 5 4 3 8 8 C 1.46497 * 120.00337 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.88381 * 31.11975 * 8 7 5 10 10 C 1.55123 * 111.19641 * 267.18981 * 8 7 5 11 11 N 1.47420 * 104.72348 * 279.18837 * 10 8 7 12 12 C 1.36941 * 125.65328 * 155.81149 * 11 10 8 13 13 H 1.08004 * 119.99682 * 5.56440 * 12 11 10 14 14 C 1.38809 * 120.00409 * 185.55417 * 12 11 10 15 15 N 1.31621 * 120.00091 * 7.32909 * 14 12 11 16 16 Si 1.86797 * 120.00086 * 187.32322 * 14 12 11 17 17 H 1.48496 * 109.47097 * 84.99270 * 16 14 12 18 18 H 1.48507 * 109.47357 * 324.99550 * 16 14 12 19 19 H 1.48499 * 109.47352 * 204.99398 * 16 14 12 20 20 C 1.47025 * 108.70274 * 335.55601 * 11 10 8 21 21 C 1.54317 * 107.27002 * 1.28135 * 20 11 10 22 22 H 1.09002 * 110.72105 * 263.83122 * 21 20 11 23 23 O 1.42899 * 110.72068 * 140.56181 * 21 20 11 24 24 C 1.35205 * 113.71908 * 0.27064 * 4 3 2 25 25 C 1.50701 * 125.58917 * 179.73632 * 24 4 3 26 26 S 1.70766 * 124.72141 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47469 * 89.99520 * 1 2 3 28 28 H 1.09001 * 109.46819 * 209.99322 * 1 2 3 29 29 H 1.08997 * 109.46741 * 329.99813 * 1 2 3 30 30 H 0.97002 * 120.00096 * 0.02562 * 7 5 4 31 31 H 1.09005 * 110.49943 * 160.34675 * 10 8 7 32 32 H 1.09001 * 110.34282 * 37.95151 * 10 8 7 33 33 H 0.97001 * 120.00005 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.88454 * 120.70691 * 20 11 10 35 35 H 1.09003 * 109.87921 * 241.71412 * 20 11 10 36 36 H 0.96695 * 114.00682 * 61.45176 * 23 21 20 37 37 H 1.09006 * 109.47206 * 89.99604 * 25 24 4 38 38 H 1.08995 * 109.47340 * 209.99842 * 25 24 4 39 39 H 1.09000 * 109.46979 * 329.99696 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5590 0.8496 0.0005 5 6 4.5463 1.9423 0.0012 6 8 5.7356 1.6876 0.0012 7 7 4.1319 3.2248 0.0018 8 6 5.1140 4.3119 0.0030 9 1 6.0217 4.0162 -0.5231 10 6 5.4366 4.7747 1.4480 11 7 4.3260 5.6741 1.8101 12 6 3.9105 5.9565 3.0840 13 1 4.4649 5.5766 3.9295 14 6 2.7771 6.7313 3.2887 15 7 2.0206 7.0736 2.2675 16 14 2.3252 7.2878 5.0136 17 1 3.0628 8.5344 5.3407 18 1 2.6894 6.2273 5.9874 19 1 0.8642 7.5441 5.0843 20 6 3.7422 6.2224 0.5771 21 6 4.5130 5.6050 -0.6087 22 1 5.3033 6.2756 -0.9460 23 8 3.6229 5.2905 -1.6815 24 6 3.9036 -0.4578 -0.0048 25 6 5.3122 -0.9935 -0.0113 26 16 2.4797 -1.4036 0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 3.1835 3.4281 0.0021 31 1 6.3842 5.3128 1.4739 32 1 5.4668 3.9188 2.1222 33 1 1.2283 7.6147 2.4106 34 1 2.6878 5.9531 0.5145 35 1 3.8488 7.3071 0.5670 36 1 3.1618 6.0575 -2.0478 37 1 5.6553 -1.1259 1.0148 38 1 5.3337 -1.9528 -0.5283 39 1 5.9664 -0.2892 -0.5251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001083561383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:37 Heat of formation + Delta-G solvation = -14.963933 kcal Electronic energy + Delta-G solvation = -24042.730183 eV Core-core repulsion = 20498.999621 eV Total energy + Delta-G solvation = -3543.730561 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.42771 -38.87660 -37.53701 -35.02654 -33.77553 -33.14823 -31.67281 -30.25824 -28.54600 -27.26775 -26.17460 -24.57644 -23.90678 -21.49904 -20.39597 -19.81928 -19.29338 -18.43566 -17.05619 -16.62627 -16.27427 -15.67569 -15.47792 -14.69155 -14.52328 -14.20355 -13.95853 -13.85467 -13.40886 -13.34881 -13.21569 -12.65327 -12.60955 -12.37695 -12.23350 -12.20065 -11.91875 -11.69099 -11.42714 -11.23146 -10.85649 -10.68739 -10.18164 -10.09039 -9.84387 -9.82866 -9.51459 -9.40426 -9.26423 -8.84692 -8.69699 -8.39793 -6.86211 -5.73482 -3.09668 0.53988 1.16911 1.58591 2.13047 3.38985 3.44116 3.45549 3.59074 3.65367 4.06989 4.45280 4.64430 4.84851 4.92617 5.09661 5.24654 5.26779 5.35493 5.43271 5.53726 5.55709 5.67906 5.75076 5.75216 5.84389 5.97224 6.12085 6.21098 6.28528 6.50770 6.61525 7.04347 7.25713 7.48865 7.53928 7.72802 8.07788 8.13235 8.21630 8.62016 9.16200 9.77241 10.41331 11.36088 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.004384 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.967370 B = 6385.247503 C = 7103.259976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 C 0.025 3.975 3 N -0.432 5.432 4 C 0.009 3.991 5 C 0.592 3.408 6 O -0.549 6.549 7 N -0.669 5.669 8 C 0.139 3.861 9 H 0.094 0.906 10 C 0.123 3.877 11 N -0.598 5.598 12 C -0.227 4.227 13 H 0.078 0.922 14 C -0.007 4.007 15 N -0.920 5.920 16 Si 0.912 3.088 17 H -0.288 1.288 18 H -0.282 1.282 19 H -0.291 1.291 20 C 0.142 3.858 21 C 0.066 3.934 22 H 0.066 0.934 23 O -0.561 6.561 24 C -0.187 4.187 25 C -0.084 4.084 26 S 0.178 5.822 27 H 0.085 0.915 28 H 0.079 0.921 29 H 0.093 0.907 30 H 0.417 0.583 31 H 0.034 0.966 32 H 0.049 0.951 33 H 0.252 0.748 34 H 0.075 0.925 35 H 0.033 0.967 36 H 0.377 0.623 37 H 0.080 0.920 38 H 0.065 0.935 39 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.536 -15.070 -8.155 17.144 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.136 4.136 2 C -0.255 4.255 3 N -0.147 5.147 4 C -0.125 4.125 5 C 0.376 3.624 6 O -0.428 6.428 7 N -0.317 5.317 8 C 0.033 3.967 9 H 0.112 0.888 10 C -0.004 4.004 11 N -0.325 5.325 12 C -0.355 4.355 13 H 0.096 0.904 14 C -0.203 4.203 15 N -0.568 5.568 16 Si 0.743 3.257 17 H -0.216 1.216 18 H -0.208 1.208 19 H -0.217 1.217 20 C 0.017 3.983 21 C 0.006 3.994 22 H 0.084 0.916 23 O -0.365 6.365 24 C -0.311 4.311 25 C -0.142 4.142 26 S 0.434 5.566 27 H 0.104 0.896 28 H 0.098 0.902 29 H 0.111 0.889 30 H 0.254 0.746 31 H 0.052 0.948 32 H 0.067 0.933 33 H 0.063 0.937 34 H 0.093 0.907 35 H 0.051 0.949 36 H 0.224 0.776 37 H 0.098 0.902 38 H 0.084 0.916 39 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges -0.157 -16.204 -7.930 18.041 hybrid contribution -0.396 1.914 0.900 2.152 sum -0.553 -14.290 -7.030 15.936 Atomic orbital electron populations 1.20443 0.84837 1.04435 1.03922 1.26963 1.02112 0.91064 1.05391 1.66950 1.03078 1.31060 1.13611 1.20355 0.90029 0.93220 1.08921 1.16977 0.86558 0.82045 0.76857 1.90699 1.15953 1.83605 1.52573 1.45366 1.11624 1.03813 1.70936 1.22276 0.91769 0.85253 0.97418 0.88779 1.22071 0.92076 0.93781 0.92456 1.44298 1.35064 1.50881 1.02304 1.19042 1.06955 1.27327 0.82184 0.90411 1.24787 0.96888 1.01064 0.97584 1.69915 1.16450 1.41908 1.28525 0.86128 0.77306 0.78658 0.83615 1.21559 1.20756 1.21699 1.21955 0.97534 0.96009 0.82814 1.23494 0.92259 0.95338 0.88343 0.91576 1.86435 1.61029 1.37692 1.51386 1.25492 1.02812 0.96340 1.06487 1.20512 0.88910 1.01143 1.03681 1.82632 0.95115 1.12008 1.66809 0.89597 0.90189 0.88854 0.74595 0.94843 0.93253 0.93746 0.90714 0.94897 0.77638 0.90152 0.91621 0.87509 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.69 10.46 36.01 0.38 -0.32 16 2 C 0.02 0.32 7.34 -13.61 -0.10 0.22 16 3 N -0.43 -7.22 10.12 -8.51 -0.09 -7.31 16 4 C 0.01 0.15 6.70 -84.53 -0.57 -0.42 16 5 C 0.59 11.48 7.80 -12.59 -0.10 11.38 16 6 O -0.55 -11.04 13.74 5.25 0.07 -10.96 16 7 N -0.67 -13.36 4.81 -52.74 -0.25 -13.61 16 8 C 0.14 2.73 3.31 -65.67 -0.22 2.51 16 9 H 0.09 1.76 7.54 -51.93 -0.39 1.37 16 10 C 0.12 2.69 6.95 -2.42 -0.02 2.67 16 11 N -0.60 -15.21 3.39 -169.94 -0.58 -15.79 16 12 C -0.23 -6.35 10.26 -15.06 -0.15 -6.50 16 13 H 0.08 2.13 7.84 -52.48 -0.41 1.72 16 14 C -0.01 -0.19 5.45 -17.43 -0.09 -0.29 16 15 N -0.92 -26.57 10.45 55.49 0.58 -25.99 16 16 Si 0.91 22.19 29.56 -169.99 -5.02 17.16 16 17 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 18 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 19 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 20 C 0.14 3.34 5.21 -3.07 -0.02 3.32 16 21 C 0.07 1.24 4.12 -24.90 -0.10 1.14 16 22 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 23 O -0.56 -9.74 12.67 -35.23 -0.45 -10.18 16 24 C -0.19 -2.65 6.40 -35.39 -0.23 -2.88 16 25 C -0.08 -1.02 9.64 36.01 0.35 -0.67 16 26 S 0.18 1.91 22.89 -107.50 -2.46 -0.55 16 27 H 0.09 0.65 8.14 -51.93 -0.42 0.23 16 28 H 0.08 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.09 0.94 8.14 -51.93 -0.42 0.51 16 30 H 0.42 8.82 7.91 -40.82 -0.32 8.50 16 31 H 0.03 0.69 8.14 -51.93 -0.42 0.27 16 32 H 0.05 1.13 8.14 -51.93 -0.42 0.70 16 33 H 0.25 7.10 8.31 -40.82 -0.34 6.76 16 34 H 0.07 1.97 6.80 -51.93 -0.35 1.62 16 35 H 0.03 0.83 7.97 -51.93 -0.41 0.42 16 36 H 0.38 5.07 9.11 45.56 0.42 5.48 16 37 H 0.08 0.94 8.14 -51.93 -0.42 0.51 16 38 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 39 H 0.11 1.51 6.00 -51.93 -0.31 1.20 16 LS Contribution 339.21 15.07 5.11 5.11 Total: -1.00 -33.04 339.21 -8.26 -41.30 By element: Atomic # 1 Polarization: 14.96 SS G_CDS: -4.31 Total: 10.65 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: -0.87 Total: 10.16 kcal Atomic # 7 Polarization: -62.36 SS G_CDS: -0.34 Total: -62.70 kcal Atomic # 8 Polarization: -20.77 SS G_CDS: -0.37 Total: -21.15 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.16 kcal Atomic # 16 Polarization: 1.91 SS G_CDS: -2.46 Total: -0.55 kcal Total LS contribution 5.11 Total: 5.11 kcal Total: -33.04 -8.26 -41.30 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083561383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.339 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.704 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.260 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.303 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.964 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.60 seconds