Wall clock time and date at job start Tue Mar 31 2020 09:40:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28652 * 124.71801 * 2 1 4 4 C 1.33558 * 115.76402 * 179.97438 * 3 2 1 5 5 C 1.47262 * 123.14361 * 180.02562 * 4 3 2 6 6 O 1.21629 * 120.00900 * 180.02562 * 5 4 3 7 7 N 1.34779 * 119.99848 * 0.02562 * 5 4 3 8 8 C 1.46497 * 120.00337 * 179.97438 * 7 5 4 9 9 H 1.09000 * 110.88381 * 31.11975 * 8 7 5 10 10 C 1.55123 * 111.19641 * 267.18981 * 8 7 5 11 11 N 1.47420 * 104.72348 * 279.18837 * 10 8 7 12 12 C 1.36941 * 125.65328 * 155.81149 * 11 10 8 13 13 H 1.08004 * 119.99682 * 5.56440 * 12 11 10 14 14 C 1.38809 * 120.00409 * 185.55417 * 12 11 10 15 15 N 1.31621 * 120.00091 * 7.32909 * 14 12 11 16 16 Si 1.86797 * 120.00086 * 187.32322 * 14 12 11 17 17 H 1.48496 * 109.47097 * 84.99270 * 16 14 12 18 18 H 1.48507 * 109.47357 * 324.99550 * 16 14 12 19 19 H 1.48499 * 109.47352 * 204.99398 * 16 14 12 20 20 C 1.47025 * 108.70274 * 335.55601 * 11 10 8 21 21 C 1.54317 * 107.27002 * 1.28135 * 20 11 10 22 22 H 1.09002 * 110.72105 * 263.83122 * 21 20 11 23 23 O 1.42899 * 110.72068 * 140.56181 * 21 20 11 24 24 C 1.35205 * 113.71908 * 0.27064 * 4 3 2 25 25 C 1.50701 * 125.58917 * 179.73632 * 24 4 3 26 26 S 1.70766 * 124.72141 * 179.97438 * 2 1 3 27 27 H 1.09001 * 109.47469 * 89.99520 * 1 2 3 28 28 H 1.09001 * 109.46819 * 209.99322 * 1 2 3 29 29 H 1.08997 * 109.46741 * 329.99813 * 1 2 3 30 30 H 0.97002 * 120.00096 * 0.02562 * 7 5 4 31 31 H 1.09005 * 110.49943 * 160.34675 * 10 8 7 32 32 H 1.09001 * 110.34282 * 37.95151 * 10 8 7 33 33 H 0.97001 * 120.00005 * 179.97438 * 15 14 12 34 34 H 1.09000 * 109.88454 * 120.70691 * 20 11 10 35 35 H 1.09003 * 109.87921 * 241.71412 * 20 11 10 36 36 H 0.96695 * 114.00682 * 61.45176 * 23 21 20 37 37 H 1.09006 * 109.47206 * 89.99604 * 25 24 4 38 38 H 1.08995 * 109.47340 * 209.99842 * 25 24 4 39 39 H 1.09000 * 109.46979 * 329.99696 * 25 24 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2397 1.0575 0.0000 4 6 3.5590 0.8496 0.0005 5 6 4.5463 1.9423 0.0012 6 8 5.7356 1.6876 0.0012 7 7 4.1319 3.2248 0.0018 8 6 5.1140 4.3119 0.0030 9 1 6.0217 4.0162 -0.5231 10 6 5.4366 4.7747 1.4480 11 7 4.3260 5.6741 1.8101 12 6 3.9105 5.9565 3.0840 13 1 4.4649 5.5766 3.9295 14 6 2.7771 6.7313 3.2887 15 7 2.0206 7.0736 2.2675 16 14 2.3252 7.2878 5.0136 17 1 3.0628 8.5344 5.3407 18 1 2.6894 6.2273 5.9874 19 1 0.8642 7.5441 5.0843 20 6 3.7422 6.2224 0.5771 21 6 4.5130 5.6050 -0.6087 22 1 5.3033 6.2756 -0.9460 23 8 3.6229 5.2905 -1.6815 24 6 3.9036 -0.4578 -0.0048 25 6 5.3122 -0.9935 -0.0113 26 16 2.4797 -1.4036 0.0006 27 1 -0.3634 0.0001 -1.0276 28 1 -0.3633 -0.8901 0.5137 29 1 -0.3633 0.8900 0.5139 30 1 3.1835 3.4281 0.0021 31 1 6.3842 5.3128 1.4739 32 1 5.4668 3.9188 2.1222 33 1 1.2283 7.6147 2.4106 34 1 2.6878 5.9531 0.5145 35 1 3.8488 7.3071 0.5670 36 1 3.1618 6.0575 -2.0478 37 1 5.6553 -1.1259 1.0148 38 1 5.3337 -1.9528 -0.5283 39 1 5.9664 -0.2892 -0.5251 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001083561383.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:40:37 Heat of formation + Delta-G solvation = -41.036094 kcal Electronic energy + Delta-G solvation = -24043.860756 eV Core-core repulsion = 20498.999621 eV Total energy + Delta-G solvation = -3544.861135 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -41.68522 -40.31477 -39.04804 -36.65130 -35.38492 -34.21443 -33.56985 -31.24531 -30.29675 -28.97265 -27.41207 -26.32533 -25.16483 -22.78479 -22.20656 -21.37473 -20.57653 -19.53963 -18.98486 -18.11878 -17.61429 -17.29729 -16.73200 -16.47985 -15.87090 -15.81988 -15.36023 -15.14023 -14.87439 -14.44002 -14.27161 -14.21147 -14.02407 -13.76337 -13.55637 -13.23635 -13.14860 -13.07791 -13.02798 -12.78542 -12.73152 -12.50076 -12.05367 -11.89817 -11.78013 -11.06439 -10.88932 -10.77211 -10.70551 -10.37502 -10.15399 -9.70706 -8.91190 -7.86460 -5.25098 -0.51005 0.22388 0.56717 0.92618 1.43958 1.45791 1.53638 2.20339 2.30075 2.46003 3.01438 3.15380 3.31382 3.56191 3.75134 3.83848 3.93596 3.96289 4.02114 4.31260 4.49337 4.55234 4.59858 4.64042 4.69967 4.77193 4.80415 4.80829 4.87485 5.16507 5.22395 5.30450 5.47266 5.51932 5.68979 6.15584 6.35286 6.65163 6.84582 7.05244 7.13354 7.70393 8.34178 9.20760 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.013920 B = 0.004384 C = 0.003941 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2010.967370 B = 6385.247503 C = 7103.259976 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.077 4.077 2 C 0.007 3.993 3 N -0.476 5.476 4 C -0.030 4.030 5 C 0.586 3.414 6 O -0.564 6.564 7 N -0.676 5.676 8 C 0.143 3.857 9 H 0.109 0.891 10 C 0.124 3.876 11 N -0.616 5.616 12 C -0.246 4.246 13 H 0.076 0.924 14 C -0.058 4.058 15 N -0.943 5.943 16 Si 0.976 3.024 17 H -0.283 1.283 18 H -0.275 1.275 19 H -0.292 1.292 20 C 0.154 3.846 21 C 0.087 3.913 22 H 0.096 0.904 23 O -0.564 6.564 24 C -0.200 4.200 25 C -0.083 4.083 26 S 0.282 5.718 27 H 0.103 0.897 28 H 0.111 0.889 29 H 0.078 0.922 30 H 0.409 0.591 31 H 0.051 0.949 32 H 0.032 0.968 33 H 0.248 0.752 34 H 0.040 0.960 35 H 0.009 0.991 36 H 0.395 0.605 37 H 0.084 0.916 38 H 0.099 0.901 39 H 0.083 0.917 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.813 -17.164 -8.493 19.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.272 4.272 3 N -0.192 5.192 4 C -0.164 4.164 5 C 0.371 3.629 6 O -0.445 6.445 7 N -0.324 5.324 8 C 0.037 3.963 9 H 0.126 0.874 10 C -0.003 4.003 11 N -0.343 5.343 12 C -0.375 4.375 13 H 0.094 0.906 14 C -0.251 4.251 15 N -0.591 5.591 16 Si 0.805 3.195 17 H -0.210 1.210 18 H -0.200 1.200 19 H -0.218 1.218 20 C 0.029 3.971 21 C 0.027 3.973 22 H 0.113 0.887 23 O -0.371 6.371 24 C -0.325 4.325 25 C -0.141 4.141 26 S 0.540 5.460 27 H 0.122 0.878 28 H 0.129 0.871 29 H 0.097 0.903 30 H 0.245 0.755 31 H 0.069 0.931 32 H 0.050 0.950 33 H 0.058 0.942 34 H 0.058 0.942 35 H 0.027 0.973 36 H 0.245 0.755 37 H 0.103 0.897 38 H 0.117 0.883 39 H 0.102 0.898 Dipole moment (debyes) X Y Z Total from point charges -0.423 -18.318 -8.285 20.109 hybrid contribution -0.348 2.420 0.988 2.637 sum -0.771 -15.898 -7.297 17.510 Atomic orbital electron populations 1.20639 0.82508 1.05267 1.05324 1.27643 1.03815 0.91767 1.03982 1.66929 1.03193 1.33395 1.15719 1.20170 0.90246 0.93563 1.12429 1.17418 0.87061 0.82352 0.76038 1.90670 1.16669 1.83915 1.53292 1.45424 1.11065 1.04338 1.71545 1.22230 0.92445 0.85667 0.95948 0.87358 1.22171 0.91726 0.92760 0.93627 1.44511 1.35991 1.51599 1.02198 1.19348 1.07215 1.27422 0.83471 0.90649 1.25572 0.96945 1.01393 1.01230 1.70119 1.16555 1.42275 1.30176 0.85134 0.76651 0.78264 0.79486 1.20995 1.20013 1.21827 1.21728 0.96435 0.94728 0.84234 1.23240 0.92302 0.94824 0.86964 0.88668 1.86409 1.61129 1.39064 1.50461 1.25943 1.05396 0.96382 1.04807 1.20543 0.87519 1.02024 1.04055 1.82180 0.91267 1.08448 1.64092 0.87816 0.87061 0.90305 0.75538 0.93100 0.94979 0.94243 0.94153 0.97293 0.75533 0.89736 0.88250 0.89802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.25 10.46 71.24 0.74 -0.51 16 2 C 0.01 0.18 7.34 88.57 0.65 0.83 16 3 N -0.48 -16.00 10.12 -180.84 -1.83 -17.83 16 4 C -0.03 -1.06 6.70 40.56 0.27 -0.78 16 5 C 0.59 23.26 7.80 86.62 0.68 23.93 16 6 O -0.56 -23.11 13.74 -4.12 -0.06 -23.17 16 7 N -0.68 -27.71 4.81 -439.01 -2.11 -29.82 16 8 C 0.14 5.64 3.31 46.46 0.15 5.79 16 9 H 0.11 3.97 7.54 -2.39 -0.02 3.96 16 10 C 0.12 5.46 6.95 86.93 0.60 6.06 16 11 N -0.62 -32.11 3.39 -691.56 -2.35 -34.45 16 12 C -0.25 -14.07 10.26 84.03 0.86 -13.21 16 13 H 0.08 4.22 7.84 -2.91 -0.02 4.20 16 14 C -0.06 -3.29 5.45 84.86 0.46 -2.83 16 15 N -0.94 -55.93 10.45 21.65 0.23 -55.71 16 16 Si 0.98 46.22 29.56 68.60 2.03 48.25 16 17 H -0.28 -13.10 7.11 99.48 0.71 -12.39 16 18 H -0.27 -12.58 7.11 99.48 0.71 -11.87 16 19 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 20 C 0.15 7.44 5.21 86.73 0.45 7.89 16 21 C 0.09 3.25 4.12 31.78 0.13 3.38 16 22 H 0.10 3.06 8.14 -2.39 -0.02 3.04 16 23 O -0.56 -19.26 12.67 -148.98 -1.89 -21.15 16 24 C -0.20 -5.41 6.40 24.99 0.16 -5.25 16 25 C -0.08 -1.89 9.64 71.24 0.69 -1.21 16 26 S 0.28 5.21 22.89 -56.49 -1.29 3.92 16 27 H 0.10 1.32 8.14 -2.39 -0.02 1.30 16 28 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 29 H 0.08 1.53 8.14 -2.39 -0.02 1.51 16 30 H 0.41 18.02 7.91 -92.71 -0.73 17.29 16 31 H 0.05 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.03 1.51 8.14 -2.39 -0.02 1.49 16 33 H 0.25 14.32 8.31 -92.71 -0.77 13.55 16 34 H 0.04 2.22 6.80 -2.39 -0.02 2.20 16 35 H 0.01 0.47 7.97 -2.39 -0.02 0.45 16 36 H 0.39 10.30 9.11 -74.06 -0.67 9.63 16 37 H 0.08 1.86 8.14 -2.38 -0.02 1.84 16 38 H 0.10 1.54 8.14 -2.39 -0.02 1.52 16 39 H 0.08 2.35 6.00 -2.39 -0.01 2.33 16 Total: -1.00 -74.08 339.21 -1.72 -75.80 By element: Atomic # 1 Polarization: 30.38 SS G_CDS: -0.30 Total: 30.08 kcal Atomic # 6 Polarization: 18.24 SS G_CDS: 5.85 Total: 24.09 kcal Atomic # 7 Polarization: -131.76 SS G_CDS: -6.06 Total: -137.82 kcal Atomic # 8 Polarization: -42.37 SS G_CDS: -1.94 Total: -44.32 kcal Atomic # 14 Polarization: 46.22 SS G_CDS: 2.03 Total: 48.25 kcal Atomic # 16 Polarization: 5.21 SS G_CDS: -1.29 Total: 3.92 kcal Total: -74.08 -1.72 -75.80 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001083561383.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.763 kcal (2) G-P(sol) polarization free energy of solvation -74.078 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -39.315 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.722 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.799 kcal (6) G-S(sol) free energy of system = (1) + (5) -41.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds