Wall clock time and date at job start Tue Mar 31 2020 09:43:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.52997 * 109.47207 * 269.99829 * 6 5 4 8 8 N 1.46502 * 109.47198 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99685 * 180.02562 * 8 7 6 10 10 O 1.21346 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99716 * 180.02562 * 9 8 7 12 12 O 1.21346 * 119.99953 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99716 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99685 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47157 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99896 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47185 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47123 * 120.00117 * 20 18 16 23 23 H 1.48502 * 109.47474 * 239.99780 * 20 18 16 24 24 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 28 28 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 29 29 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 30 30 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 31 31 H 1.08994 * 109.47304 * 300.00241 * 7 6 5 32 32 H 1.09005 * 109.46716 * 60.00111 * 7 6 5 33 33 H 0.96993 * 120.00229 * 0.02562 * 8 7 6 34 34 H 0.96993 * 120.00086 * 359.97438 * 13 11 9 35 35 H 1.09008 * 109.47258 * 300.00117 * 14 13 11 36 36 H 1.08997 * 109.47126 * 60.00012 * 14 13 11 37 37 H 1.09008 * 109.46928 * 300.00028 * 15 14 13 38 38 H 1.08997 * 109.47364 * 59.99866 * 15 14 13 39 39 H 0.97002 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5073 -1.4589 8 7 5.7661 -3.6202 -1.4655 9 6 6.2033 -4.1260 -2.6359 10 8 5.8082 -3.6592 -3.6840 11 6 7.1748 -5.2617 -2.6427 12 8 7.5703 -5.7281 -1.5946 13 7 7.6124 -5.7671 -3.8130 14 6 8.5651 -6.8800 -3.8197 15 6 8.8965 -7.2590 -5.2644 16 6 9.8760 -8.4042 -5.2713 17 1 10.2274 -8.8198 -4.3385 18 6 10.3236 -8.9213 -6.4686 19 7 9.8953 -8.4154 -7.6045 20 14 11.5383 -10.3403 -6.4771 21 1 11.8606 -10.7245 -5.0793 22 1 10.9387 -11.5010 -7.1832 23 1 12.7810 -9.9241 -7.1756 24 7 2.2199 -1.1083 -0.0065 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3633 -0.8876 -0.5180 27 1 -0.3633 0.8924 -0.5097 28 1 1.8392 2.1308 0.0006 29 1 5.3966 -1.8274 0.5003 30 1 4.0439 -2.9843 0.4958 31 1 3.9004 -2.8071 -1.9732 32 1 5.2530 -1.6501 -1.9688 33 1 6.0823 -3.9931 -0.6278 34 1 7.2965 -5.3940 -4.6507 35 1 9.4778 -6.5801 -3.3046 36 1 8.1256 -7.7376 -3.3104 37 1 7.9839 -7.5587 -5.7799 38 1 9.3362 -6.4012 -5.7734 39 1 10.2099 -8.7795 -8.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001117040914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:38 Heat of formation + Delta-G solvation = -43.195445 kcal Electronic energy + Delta-G solvation = -21538.812055 eV Core-core repulsion = 17993.857284 eV Total energy + Delta-G solvation = -3544.954772 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.52257 -40.24464 -38.36181 -36.13834 -35.02888 -33.27974 -32.82002 -30.60618 -29.81023 -28.04896 -26.35817 -24.97644 -23.22420 -22.24700 -21.04885 -20.32423 -20.09999 -18.42107 -17.93267 -16.90156 -16.37971 -16.12591 -15.79358 -15.50603 -15.12356 -15.00863 -14.75971 -14.44212 -14.13512 -13.74627 -13.51289 -13.39414 -13.16309 -12.91069 -12.84604 -12.33456 -12.31633 -11.87893 -11.73928 -11.53803 -11.23421 -11.07889 -10.65339 -10.41179 -10.09237 -9.85562 -9.80339 -9.46208 -9.43362 -9.22151 -9.12172 -8.70734 -8.42421 -6.10535 -4.14126 0.23021 0.91035 1.30159 1.58720 2.26992 2.50611 3.27883 3.35535 3.39953 3.40721 3.52961 3.89932 4.36659 4.41158 4.45455 4.58025 4.70231 4.75032 4.81394 5.02686 5.15467 5.23741 5.26467 5.35340 5.47393 5.52700 5.80972 6.01276 6.17361 6.23320 6.58430 6.68510 6.98888 7.30697 7.45873 7.57477 7.64016 7.86910 7.89756 8.20229 8.32783 8.91751 9.50848 11.00971 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.043506 B = 0.001778 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.431742 B =15744.287012 C =15880.323769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C 0.068 3.932 3 C -0.264 4.264 4 S 0.131 5.869 5 C 0.054 3.946 6 C -0.057 4.057 7 C 0.126 3.874 8 N -0.706 5.706 9 C 0.509 3.491 10 O -0.517 6.517 11 C 0.498 3.502 12 O -0.533 6.533 13 N -0.686 5.686 14 C 0.119 3.881 15 C 0.010 3.990 16 C -0.523 4.523 17 H 0.061 0.939 18 C 0.059 3.941 19 N -0.892 5.892 20 Si 0.898 3.102 21 H -0.271 1.271 22 H -0.283 1.283 23 H -0.283 1.283 24 N -0.466 5.466 25 H 0.076 0.924 26 H 0.077 0.923 27 H 0.075 0.925 28 H 0.178 0.822 29 H 0.097 0.903 30 H 0.106 0.894 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.414 0.586 34 H 0.411 0.589 35 H 0.063 0.937 36 H 0.064 0.936 37 H 0.025 0.975 38 H 0.025 0.975 39 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.112 20.586 17.255 31.322 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.064 4.064 3 C -0.403 4.403 4 S 0.386 5.614 5 C -0.224 4.224 6 C -0.098 4.098 7 C 0.001 3.999 8 N -0.361 5.361 9 C 0.290 3.710 10 O -0.392 6.392 11 C 0.278 3.722 12 O -0.411 6.411 13 N -0.336 5.336 14 C -0.003 4.003 15 C -0.028 4.028 16 C -0.561 4.561 17 H 0.079 0.921 18 C -0.143 4.143 19 N -0.530 5.530 20 Si 0.726 3.274 21 H -0.196 1.196 22 H -0.209 1.209 23 H -0.209 1.209 24 N -0.181 5.181 25 H 0.094 0.906 26 H 0.096 0.904 27 H 0.094 0.906 28 H 0.195 0.805 29 H 0.116 0.884 30 H 0.125 0.875 31 H 0.099 0.901 32 H 0.094 0.906 33 H 0.251 0.749 34 H 0.246 0.754 35 H 0.082 0.918 36 H 0.082 0.918 37 H 0.044 0.956 38 H 0.044 0.956 39 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -15.347 20.585 17.034 30.813 hybrid contribution -0.309 -0.613 -0.138 0.700 sum -15.657 19.972 16.896 30.488 Atomic orbital electron populations 1.20383 0.86926 1.03577 1.03054 1.20342 0.98412 0.86380 1.01287 1.26874 0.95174 1.04113 1.14156 1.84106 1.07230 1.02563 1.67505 1.26636 0.93903 0.98119 1.03756 1.20429 0.96498 0.95066 0.97844 1.21341 0.93519 0.89666 0.95422 1.45638 1.45722 1.35409 1.09352 1.20465 0.82299 0.84142 0.84058 1.90770 1.56920 1.60193 1.31312 1.19917 0.82855 0.84128 0.85339 1.90730 1.58093 1.60963 1.31341 1.46239 1.44337 1.35104 1.07946 1.21944 0.90118 0.86041 1.02195 1.19369 0.97601 0.97373 0.88415 1.21053 1.25874 1.16445 0.92776 0.92091 1.25011 0.96607 0.97198 0.95515 1.69973 1.43990 1.41728 0.97354 0.86438 0.80805 0.81971 0.78224 1.19579 1.20932 1.20928 1.66121 1.04432 1.31801 1.15745 0.90553 0.90369 0.90624 0.80512 0.88428 0.87550 0.90141 0.90602 0.74938 0.75356 0.91818 0.91814 0.95631 0.95633 0.92827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.45 10.31 36.01 0.37 -0.08 16 2 C 0.07 0.56 6.74 -84.22 -0.57 -0.01 16 3 C -0.26 -1.81 11.13 29.12 0.32 -1.48 16 4 S 0.13 0.90 23.18 -107.50 -2.49 -1.59 16 5 C 0.05 0.46 6.64 -13.46 -0.09 0.37 16 6 C -0.06 -0.39 5.91 -27.89 -0.16 -0.55 16 7 C 0.13 1.14 5.66 -4.04 -0.02 1.12 16 8 N -0.71 -7.61 5.55 -60.73 -0.34 -7.94 16 9 C 0.51 7.45 7.89 -11.58 -0.09 7.36 16 10 O -0.52 -8.70 16.48 5.50 0.09 -8.61 16 11 C 0.50 8.41 7.89 -11.58 -0.09 8.32 16 12 O -0.53 -9.82 16.48 5.50 0.09 -9.73 16 13 N -0.69 -12.38 5.55 -60.73 -0.34 -12.72 16 14 C 0.12 2.46 5.61 -4.04 -0.02 2.44 16 15 C 0.01 0.24 5.09 -27.89 -0.14 0.10 16 16 C -0.52 -14.33 9.11 -34.44 -0.31 -14.64 16 17 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 18 C 0.06 1.64 5.46 -17.82 -0.10 1.54 16 19 N -0.89 -26.06 13.29 55.43 0.74 -25.33 16 20 Si 0.90 21.22 29.54 -169.99 -5.02 16.20 16 21 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 22 H -0.28 -6.64 7.11 56.52 0.40 -6.24 16 23 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 24 N -0.47 -4.64 10.53 -8.06 -0.08 -4.73 16 25 H 0.08 0.36 8.14 -51.93 -0.42 -0.06 16 26 H 0.08 0.48 8.14 -51.93 -0.42 0.06 16 27 H 0.07 0.29 8.12 -51.93 -0.42 -0.13 16 28 H 0.18 0.75 8.06 -52.49 -0.42 0.32 16 29 H 0.10 0.47 8.14 -51.93 -0.42 0.04 16 30 H 0.11 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 32 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.41 3.78 7.94 -40.82 -0.32 3.46 16 34 H 0.41 7.10 7.94 -40.82 -0.32 6.77 16 35 H 0.06 1.33 8.14 -51.92 -0.42 0.91 16 36 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 37 H 0.03 0.66 8.14 -51.92 -0.42 0.24 16 38 H 0.03 0.66 8.14 -51.93 -0.42 0.23 16 39 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 LS Contribution 358.88 15.07 5.41 5.41 Total: -1.00 -32.98 358.88 -8.12 -41.10 By element: Atomic # 1 Polarization: 8.72 SS G_CDS: -5.26 Total: 3.46 kcal Atomic # 6 Polarization: 5.39 SS G_CDS: -0.91 Total: 4.48 kcal Atomic # 7 Polarization: -50.70 SS G_CDS: -0.02 Total: -50.72 kcal Atomic # 8 Polarization: -18.52 SS G_CDS: 0.18 Total: -18.34 kcal Atomic # 14 Polarization: 21.22 SS G_CDS: -5.02 Total: 16.20 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.98 -8.12 -41.10 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117040914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.099 kcal (2) G-P(sol) polarization free energy of solvation -32.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.115 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.195 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds