Wall clock time and date at job start Tue Mar 31 2020 09:43:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.33640 * 122.75089 * 2 1 4 4 S 1.76195 * 107.92432 * 179.97438 * 3 2 1 5 5 C 1.70978 * 90.28375 * 0.27465 * 4 3 2 6 6 C 1.50697 * 124.91613 * 179.84140 * 5 4 3 7 7 C 1.52997 * 109.47207 * 269.99829 * 6 5 4 8 8 N 1.46502 * 109.47198 * 179.97438 * 7 6 5 9 9 C 1.34779 * 119.99685 * 180.02562 * 8 7 6 10 10 O 1.21346 * 120.00331 * 0.02562 * 9 8 7 11 11 C 1.49454 * 119.99716 * 180.02562 * 9 8 7 12 12 O 1.21346 * 119.99953 * 359.97438 * 11 9 8 13 13 N 1.34779 * 119.99716 * 180.02562 * 11 9 8 14 14 C 1.46502 * 119.99685 * 179.97438 * 13 11 9 15 15 C 1.52995 * 109.47090 * 180.02562 * 14 13 11 16 16 C 1.50700 * 109.47157 * 180.02562 * 15 14 13 17 17 H 1.08002 * 119.99896 * 359.97438 * 16 15 14 18 18 C 1.37884 * 120.00050 * 179.97438 * 16 15 14 19 19 N 1.31519 * 119.99725 * 359.97438 * 18 16 15 20 20 Si 1.86792 * 119.99963 * 179.97438 * 18 16 15 21 21 H 1.48500 * 109.47185 * 0.02562 * 20 18 16 22 22 H 1.48503 * 109.47123 * 120.00117 * 20 18 16 23 23 H 1.48502 * 109.47474 * 239.99780 * 20 18 16 24 24 N 1.29028 * 110.16487 * 359.84202 * 5 4 3 25 25 H 1.09002 * 109.47152 * 269.73104 * 1 2 3 26 26 H 1.09001 * 109.46980 * 149.73205 * 1 2 3 27 27 H 1.09004 * 109.47113 * 29.73186 * 1 2 3 28 28 H 1.08001 * 126.03754 * 0.04014 * 3 2 1 29 29 H 1.09001 * 109.47564 * 30.00196 * 6 5 4 30 30 H 1.09005 * 109.47191 * 150.00231 * 6 5 4 31 31 H 1.08994 * 109.47304 * 300.00241 * 7 6 5 32 32 H 1.09005 * 109.46716 * 60.00111 * 7 6 5 33 33 H 0.96993 * 120.00229 * 0.02562 * 8 7 6 34 34 H 0.96993 * 120.00086 * 359.97438 * 13 11 9 35 35 H 1.09008 * 109.47258 * 300.00117 * 14 13 11 36 36 H 1.08997 * 109.47126 * 60.00012 * 14 13 11 37 37 H 1.09008 * 109.46928 * 300.00028 * 15 14 13 38 38 H 1.08997 * 109.47364 * 59.99866 * 15 14 13 39 39 H 0.97002 * 119.99726 * 180.02562 * 19 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2300 1.1240 0.0000 4 16 3.9333 0.6731 0.0007 5 6 3.5040 -0.9819 -0.0072 6 6 4.4835 -2.1271 -0.0141 7 6 4.8134 -2.5073 -1.4589 8 7 5.7661 -3.6202 -1.4655 9 6 6.2033 -4.1260 -2.6359 10 8 5.8082 -3.6592 -3.6840 11 6 7.1748 -5.2617 -2.6427 12 8 7.5703 -5.7281 -1.5946 13 7 7.6124 -5.7671 -3.8130 14 6 8.5651 -6.8800 -3.8197 15 6 8.8965 -7.2590 -5.2644 16 6 9.8760 -8.4042 -5.2713 17 1 10.2274 -8.8198 -4.3385 18 6 10.3236 -8.9213 -6.4686 19 7 9.8953 -8.4154 -7.6045 20 14 11.5383 -10.3403 -6.4771 21 1 11.8606 -10.7245 -5.0793 22 1 10.9387 -11.5010 -7.1832 23 1 12.7810 -9.9241 -7.1756 24 7 2.2199 -1.1083 -0.0065 25 1 -0.3633 -0.0048 1.0277 26 1 -0.3633 -0.8876 -0.5180 27 1 -0.3633 0.8924 -0.5097 28 1 1.8392 2.1308 0.0006 29 1 5.3966 -1.8274 0.5003 30 1 4.0439 -2.9843 0.4958 31 1 3.9004 -2.8071 -1.9732 32 1 5.2530 -1.6501 -1.9688 33 1 6.0823 -3.9931 -0.6278 34 1 7.2965 -5.3940 -4.6507 35 1 9.4778 -6.5801 -3.3046 36 1 8.1256 -7.7376 -3.3104 37 1 7.9839 -7.5587 -5.7799 38 1 9.3362 -6.4012 -5.7734 39 1 10.2099 -8.7795 -8.4468 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001117040914.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:43:37 Heat of formation + Delta-G solvation = -67.703643 kcal Electronic energy + Delta-G solvation = -21539.874810 eV Core-core repulsion = 17993.857284 eV Total energy + Delta-G solvation = -3546.017527 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.72468 -40.88784 -39.67621 -37.19377 -36.53942 -34.85538 -33.93247 -31.69931 -31.25106 -28.54777 -27.68467 -26.37989 -24.47386 -23.00151 -22.76672 -21.51286 -20.73355 -19.66510 -18.63010 -18.50640 -17.86843 -17.26147 -16.83941 -16.52206 -16.28844 -16.22176 -15.99847 -15.65389 -15.30682 -14.88348 -14.53382 -14.32343 -14.25995 -13.97109 -13.71225 -13.33331 -13.24636 -12.95881 -12.91088 -12.84813 -12.52861 -12.50608 -12.28872 -12.24613 -11.68236 -11.41473 -10.77919 -10.64623 -10.61893 -10.46001 -10.36864 -10.19353 -9.67317 -8.23211 -6.34272 -0.32633 0.30474 0.38328 0.75967 1.26149 1.42940 1.44177 1.57140 1.75888 2.10735 2.39833 2.61865 3.10316 3.11912 3.43030 3.73163 3.89649 3.99220 4.25861 4.34904 4.39449 4.44332 4.46304 4.69420 4.76193 4.79186 4.82276 4.85635 5.00593 5.04943 5.08174 5.34271 5.43035 5.55510 5.75701 5.89809 6.13345 6.34879 6.69071 6.75227 6.80162 6.91569 7.35355 8.89013 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.043506 B = 0.001778 C = 0.001763 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 643.431742 B =15744.287012 C =15880.323769 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C 0.042 3.958 3 C -0.262 4.262 4 S 0.153 5.847 5 C 0.036 3.964 6 C -0.050 4.050 7 C 0.129 3.871 8 N -0.684 5.684 9 C 0.516 3.484 10 O -0.542 6.542 11 C 0.502 3.498 12 O -0.546 6.546 13 N -0.689 5.689 14 C 0.138 3.862 15 C 0.017 3.983 16 C -0.543 4.543 17 H 0.066 0.934 18 C 0.004 3.996 19 N -0.928 5.928 20 Si 0.968 3.032 21 H -0.262 1.262 22 H -0.279 1.279 23 H -0.278 1.278 24 N -0.497 5.497 25 H 0.084 0.916 26 H 0.067 0.933 27 H 0.094 0.906 28 H 0.202 0.798 29 H 0.122 0.878 30 H 0.111 0.889 31 H 0.066 0.934 32 H 0.078 0.922 33 H 0.425 0.575 34 H 0.414 0.586 35 H 0.063 0.937 36 H 0.062 0.938 37 H 0.007 0.993 38 H 0.008 0.992 39 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.003 21.319 18.724 32.576 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.089 4.089 3 C -0.400 4.400 4 S 0.408 5.592 5 C -0.242 4.242 6 C -0.090 4.090 7 C 0.004 3.996 8 N -0.338 5.338 9 C 0.296 3.704 10 O -0.419 6.419 11 C 0.283 3.717 12 O -0.425 6.425 13 N -0.340 5.340 14 C 0.015 3.985 15 C -0.021 4.021 16 C -0.582 4.582 17 H 0.084 0.916 18 C -0.195 4.195 19 N -0.568 5.568 20 Si 0.793 3.207 21 H -0.185 1.185 22 H -0.205 1.205 23 H -0.204 1.204 24 N -0.213 5.213 25 H 0.102 0.898 26 H 0.086 0.914 27 H 0.113 0.887 28 H 0.219 0.781 29 H 0.140 0.860 30 H 0.129 0.871 31 H 0.085 0.915 32 H 0.096 0.904 33 H 0.263 0.737 34 H 0.251 0.749 35 H 0.082 0.918 36 H 0.080 0.920 37 H 0.026 0.974 38 H 0.026 0.974 39 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -15.255 21.336 18.557 32.129 hybrid contribution -0.398 -0.745 -0.546 1.006 sum -15.653 20.591 18.011 31.518 Atomic orbital electron populations 1.20444 0.85638 1.03997 1.03687 1.20748 0.99557 0.86498 1.02101 1.27240 0.95107 1.04977 1.12714 1.83987 1.07169 1.01292 1.66735 1.26830 0.93836 0.99267 1.04224 1.20414 0.97344 0.95080 0.96205 1.21404 0.92278 0.88750 0.97166 1.45561 1.44738 1.34977 1.08558 1.19968 0.82043 0.83602 0.84797 1.90772 1.57907 1.60893 1.32336 1.20251 0.82696 0.84320 0.84479 1.90720 1.58599 1.61520 1.31646 1.46079 1.44317 1.34806 1.08822 1.21486 0.90764 0.86934 0.99300 1.19195 0.96183 0.96127 0.90569 1.21489 1.26361 1.17202 0.93129 0.91622 1.25930 0.98491 0.99946 0.95123 1.70089 1.45389 1.43302 0.98028 0.85342 0.78270 0.78454 0.78633 1.18549 1.20464 1.20400 1.66141 1.05359 1.33151 1.16644 0.89771 0.91423 0.88738 0.78055 0.86003 0.87099 0.91512 0.90386 0.73698 0.74949 0.91842 0.91955 0.97450 0.97357 0.92603 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.81 10.31 71.24 0.73 -0.08 16 2 C 0.04 0.66 6.74 41.52 0.28 0.94 16 3 C -0.26 -3.11 11.13 66.78 0.74 -2.37 16 4 S 0.15 1.84 23.18 -56.49 -1.31 0.53 16 5 C 0.04 0.56 6.64 88.52 0.59 1.15 16 6 C -0.05 -0.59 5.91 29.85 0.18 -0.41 16 7 C 0.13 2.18 5.66 86.38 0.49 2.67 16 8 N -0.68 -13.72 5.55 -464.41 -2.58 -16.30 16 9 C 0.52 14.64 7.89 87.27 0.69 15.33 16 10 O -0.54 -18.01 16.48 -3.23 -0.05 -18.06 16 11 C 0.50 16.59 7.89 87.27 0.69 17.28 16 12 O -0.55 -19.50 16.48 -3.23 -0.05 -19.55 16 13 N -0.69 -24.89 5.55 -464.40 -2.58 -27.46 16 14 C 0.14 5.72 5.61 86.38 0.48 6.21 16 15 C 0.02 0.85 5.09 29.85 0.15 1.00 16 16 C -0.54 -29.91 9.11 25.60 0.23 -29.68 16 17 H 0.07 3.47 7.74 -2.91 -0.02 3.45 16 18 C 0.00 0.21 5.46 84.66 0.46 0.67 16 19 N -0.93 -54.86 13.29 21.45 0.28 -54.57 16 20 Si 0.97 43.32 29.54 68.60 2.03 45.35 16 21 H -0.26 -11.18 7.11 99.48 0.71 -10.48 16 22 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 23 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 24 N -0.50 -9.59 10.53 -179.40 -1.89 -11.48 16 25 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 26 H 0.07 0.83 8.14 -2.39 -0.02 0.81 16 27 H 0.09 0.57 8.12 -2.38 -0.02 0.55 16 28 H 0.20 1.18 8.06 -2.91 -0.02 1.16 16 29 H 0.12 0.84 8.14 -2.39 -0.02 0.82 16 30 H 0.11 1.23 8.14 -2.38 -0.02 1.21 16 31 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 32 H 0.08 1.34 8.14 -2.38 -0.02 1.32 16 33 H 0.42 6.90 7.94 -92.71 -0.74 6.17 16 34 H 0.41 14.50 7.94 -92.71 -0.74 13.76 16 35 H 0.06 2.64 8.14 -2.38 -0.02 2.62 16 36 H 0.06 2.60 8.14 -2.39 -0.02 2.58 16 37 H 0.01 0.38 8.14 -2.38 -0.02 0.36 16 38 H 0.01 0.43 8.14 -2.39 -0.02 0.41 16 39 H 0.27 14.70 8.31 -92.71 -0.77 13.93 16 Total: -1.00 -70.26 358.88 -0.81 -71.07 By element: Atomic # 1 Polarization: 18.14 SS G_CDS: -0.38 Total: 17.76 kcal Atomic # 6 Polarization: 6.99 SS G_CDS: 5.72 Total: 12.71 kcal Atomic # 7 Polarization: -103.05 SS G_CDS: -6.76 Total: -109.81 kcal Atomic # 8 Polarization: -37.51 SS G_CDS: -0.11 Total: -37.61 kcal Atomic # 14 Polarization: 43.32 SS G_CDS: 2.03 Total: 45.35 kcal Atomic # 16 Polarization: 1.84 SS G_CDS: -1.31 Total: 0.53 kcal Total: -70.26 -0.81 -71.07 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001117040914.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 3.370 kcal (2) G-P(sol) polarization free energy of solvation -70.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.892 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.812 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.074 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.704 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds