Wall clock time and date at job start Tue Mar 31 2020 09:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37467 * 123.35496 * 2 1 4 4 C 1.33812 * 115.10037 * 179.76675 * 3 2 1 5 5 S 1.70610 * 110.95762 * 0.48949 * 4 3 2 6 6 C 1.36648 * 123.34854 * 180.29761 * 2 1 3 7 7 C 1.46582 * 125.45810 * 0.02562 * 6 2 1 8 8 O 1.21703 * 120.00181 * 359.97438 * 7 6 2 9 9 N 1.34783 * 120.00138 * 180.02562 * 7 6 2 10 10 C 1.46497 * 120.00147 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47103 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99977 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47064 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00130 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99859 * 179.97438 * 14 13 12 17 17 C 1.37096 * 120.00095 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99523 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00032 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00008 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46889 * 89.99753 * 21 19 17 23 23 H 1.48497 * 109.46927 * 209.99667 * 21 19 17 24 24 H 1.48498 * 109.46954 * 330.00224 * 21 19 17 25 25 H 1.08999 * 109.47015 * 269.70656 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.69809 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.70526 * 1 2 3 28 28 H 1.08003 * 122.44545 * 0.02562 * 3 2 1 29 29 H 1.08010 * 124.52049 * 180.22094 * 4 3 2 30 30 H 0.96998 * 119.99396 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47465 * 300.00367 * 10 9 7 32 32 H 1.09006 * 109.46916 * 60.00310 * 10 9 7 33 33 H 1.08996 * 109.47042 * 300.00249 * 11 10 9 34 34 H 1.09000 * 109.46551 * 60.00725 * 11 10 9 35 35 H 1.00899 * 111.00073 * 56.04635 * 12 11 10 36 36 H 1.09001 * 109.46673 * 299.99620 * 13 12 11 37 37 H 1.09001 * 109.47363 * 59.99775 * 13 12 11 38 38 H 0.97000 * 119.99744 * 0.02562 * 16 14 13 39 39 H 0.96998 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1482 0.0000 4 6 3.5871 0.9561 0.0049 5 16 3.9624 -0.7082 -0.0037 6 6 2.2583 -1.1415 -0.0059 7 6 1.7283 -2.5081 -0.0136 8 8 0.5257 -2.6945 -0.0146 9 7 2.5730 -3.5584 -0.0184 10 6 2.0434 -4.9243 -0.0255 11 6 3.2040 -5.9213 -0.0306 12 7 2.6729 -7.2909 -0.0383 13 6 3.7613 -8.2775 -0.0428 14 6 3.1791 -9.6675 -0.0513 15 8 1.9760 -9.8212 -0.0529 16 7 3.9955 -10.7400 -0.0570 17 6 3.4660 -12.0045 -0.0642 18 1 2.3947 -12.1413 -0.0657 19 6 4.3075 -13.1101 -0.0696 20 7 5.6111 -12.9436 -0.0683 21 14 3.5860 -14.8331 -0.0787 22 1 3.3953 -15.2825 -1.4812 23 1 4.5131 -15.7616 0.6168 24 1 2.2762 -14.8249 0.6209 25 1 -0.3633 -0.0053 1.0276 26 1 -0.3632 0.8927 -0.5092 27 1 -0.3634 -0.8873 -0.5184 28 1 1.8202 2.1334 0.0004 29 1 4.3206 1.7489 0.0091 30 1 3.5315 -3.4099 -0.0173 31 1 1.4325 -5.0818 0.8634 32 1 1.4334 -5.0728 -0.9166 33 1 3.8144 -5.7637 -0.9197 34 1 3.8143 -5.7729 0.8603 35 1 2.0519 -7.4335 -0.8207 36 1 4.3761 -8.1361 -0.9316 37 1 4.3750 -8.1456 0.8483 38 1 4.9577 -10.6171 -0.0553 39 1 6.1986 -13.7154 -0.0725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001122711170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:45 Heat of formation + Delta-G solvation = -42.099065 kcal Electronic energy + Delta-G solvation = -21689.586152 eV Core-core repulsion = 18144.678923 eV Total energy + Delta-G solvation = -3544.907229 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -40.13134 -38.41355 -38.15160 -36.27450 -34.41667 -33.76200 -31.35190 -31.23229 -29.96665 -28.11606 -25.94967 -24.17054 -23.69585 -22.28471 -21.56373 -19.41271 -19.13436 -18.49953 -17.90516 -16.43621 -16.17225 -16.09849 -15.83970 -15.37358 -15.25863 -14.57277 -14.28813 -14.22533 -13.84999 -13.65351 -13.54633 -13.36729 -13.13531 -12.67592 -12.48871 -12.39891 -12.11594 -11.93243 -11.53576 -11.48450 -11.44542 -11.29665 -11.03724 -10.39483 -10.22768 -10.14716 -9.51906 -9.43971 -9.11764 -8.84378 -8.51563 -8.14310 -7.97386 -6.42618 -3.83421 0.12627 1.07769 1.46463 1.99517 2.79635 2.92548 3.17762 3.26584 3.32945 3.89058 4.11113 4.35194 4.45508 4.50693 4.81253 4.84093 4.93538 4.98241 5.16526 5.21124 5.25228 5.36660 5.44809 5.54652 5.65346 5.71225 5.78837 5.87630 5.92956 5.96651 6.08676 6.21079 6.24783 7.06696 7.18496 7.54701 7.55564 7.90845 8.05229 8.60011 9.16989 9.52848 10.04193 10.75085 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.001846 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.915065 B =15165.145681 C =15812.979096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.019 4.019 3 C -0.149 4.149 4 C -0.226 4.226 5 S 0.194 5.806 6 C -0.275 4.275 7 C 0.591 3.409 8 O -0.522 6.522 9 N -0.725 5.725 10 C 0.121 3.879 11 C 0.049 3.951 12 N -0.665 5.665 13 C 0.052 3.948 14 C 0.440 3.560 15 O -0.582 6.582 16 N -0.563 5.563 17 C -0.299 4.299 18 H 0.103 0.897 19 C 0.022 3.978 20 N -0.902 5.902 21 Si 0.931 3.069 22 H -0.278 1.278 23 H -0.284 1.284 24 H -0.269 1.269 25 H 0.076 0.924 26 H 0.065 0.935 27 H 0.094 0.906 28 H 0.145 0.855 29 H 0.169 0.831 30 H 0.396 0.604 31 H 0.084 0.916 32 H 0.072 0.928 33 H 0.033 0.967 34 H 0.078 0.922 35 H 0.353 0.647 36 H 0.045 0.955 37 H 0.088 0.912 38 H 0.392 0.608 39 H 0.271 0.729 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.044 28.911 -0.764 28.940 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.035 4.035 3 C -0.180 4.180 4 C -0.363 4.363 5 S 0.462 5.538 6 C -0.395 4.395 7 C 0.378 3.622 8 O -0.400 6.400 9 N -0.377 5.377 10 C -0.002 4.002 11 C -0.082 4.082 12 N -0.298 5.298 13 C -0.080 4.080 14 C 0.225 3.775 15 O -0.466 6.466 16 N -0.200 5.200 17 C -0.429 4.429 18 H 0.121 0.879 19 C -0.180 4.180 20 N -0.543 5.543 21 Si 0.758 3.242 22 H -0.204 1.204 23 H -0.209 1.209 24 H -0.194 1.194 25 H 0.095 0.905 26 H 0.084 0.916 27 H 0.113 0.887 28 H 0.163 0.837 29 H 0.187 0.813 30 H 0.230 0.770 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.051 0.949 34 H 0.096 0.904 35 H 0.172 0.828 36 H 0.063 0.937 37 H 0.106 0.894 38 H 0.225 0.775 39 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 0.828 27.628 -0.087 27.641 hybrid contribution 0.127 0.371 -0.879 0.963 sum 0.955 27.999 -0.967 28.032 Atomic orbital electron populations 1.20763 0.88551 1.04000 1.03230 1.19569 0.98008 0.90365 0.95520 1.19959 0.92578 0.99768 1.05719 1.25267 1.00713 1.01751 1.08590 1.83001 1.04062 0.98470 1.68276 1.24423 0.97259 0.97371 1.20441 1.16862 0.86143 0.82724 0.76517 1.90807 1.14233 1.85179 1.49811 1.45782 1.09596 1.06363 1.75954 1.21329 0.96470 0.78630 1.03764 1.22084 0.95778 0.89181 1.01123 1.59918 1.18423 0.99901 1.51583 1.21674 0.93040 0.91954 1.01366 1.19774 0.87596 0.85494 0.84631 1.90534 1.14671 1.86067 1.55319 1.41856 1.08701 1.05088 1.64337 1.19714 0.94342 0.81274 1.47563 0.87873 1.25269 0.95134 1.00275 0.97298 1.69610 1.02248 1.31871 1.50601 0.85844 0.78769 0.81229 0.78377 1.20424 1.20920 1.19373 0.90530 0.91613 0.88745 0.83688 0.81308 0.76962 0.89812 0.91010 0.94852 0.90383 0.82756 0.93685 0.89425 0.77451 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 9.55 36.01 0.34 -0.60 16 2 C -0.02 -0.18 5.90 -105.47 -0.62 -0.80 16 3 C -0.15 -1.05 9.97 -41.42 -0.41 -1.46 16 4 C -0.23 -1.37 10.92 29.18 0.32 -1.05 16 5 S 0.19 1.30 22.16 -107.50 -2.38 -1.08 16 6 C -0.27 -2.71 6.45 -36.79 -0.24 -2.95 16 7 C 0.59 7.08 7.78 -12.89 -0.10 6.98 16 8 O -0.52 -7.87 14.24 5.19 0.07 -7.79 16 9 N -0.73 -7.33 5.55 -61.64 -0.34 -7.67 16 10 C 0.12 1.40 5.93 -4.04 -0.02 1.38 16 11 C 0.05 0.55 5.80 -3.83 -0.02 0.53 16 12 N -0.66 -10.46 6.13 -115.06 -0.70 -11.16 16 13 C 0.05 0.90 6.17 -4.97 -0.03 0.87 16 14 C 0.44 10.33 7.82 -10.98 -0.09 10.25 16 15 O -0.58 -15.86 15.78 5.55 0.09 -15.77 16 16 N -0.56 -14.21 5.29 -10.96 -0.06 -14.27 16 17 C -0.30 -8.35 9.68 -14.93 -0.14 -8.50 16 18 H 0.10 3.02 7.16 -52.49 -0.38 2.65 16 19 C 0.02 0.58 5.50 -17.47 -0.10 0.49 16 20 N -0.90 -24.44 13.05 55.50 0.72 -23.71 16 21 Si 0.93 21.06 29.55 -169.99 -5.02 16.03 16 22 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 23 H -0.28 -6.28 7.11 56.52 0.40 -5.87 16 24 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 25 H 0.08 0.65 8.14 -51.93 -0.42 0.22 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.01 16 27 H 0.09 1.04 6.01 -51.93 -0.31 0.73 16 28 H 0.15 0.71 8.06 -52.48 -0.42 0.29 16 29 H 0.17 0.59 8.06 -52.48 -0.42 0.17 16 30 H 0.40 3.04 7.59 -40.82 -0.31 2.73 16 31 H 0.08 1.10 8.14 -51.93 -0.42 0.68 16 32 H 0.07 0.87 8.14 -51.93 -0.42 0.45 16 33 H 0.03 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 35 H 0.35 5.74 8.43 -39.29 -0.33 5.41 16 36 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 37 H 0.09 1.37 8.14 -51.93 -0.42 0.95 16 38 H 0.39 9.40 7.90 -40.82 -0.32 9.07 16 39 H 0.27 6.96 8.31 -40.82 -0.34 6.62 16 LS Contribution 351.19 15.07 5.29 5.29 Total: -1.00 -33.37 351.19 -8.46 -41.83 By element: Atomic # 1 Polarization: 18.18 SS G_CDS: -5.01 Total: 13.16 kcal Atomic # 6 Polarization: 6.24 SS G_CDS: -1.11 Total: 5.13 kcal Atomic # 7 Polarization: -56.44 SS G_CDS: -0.38 Total: -56.82 kcal Atomic # 8 Polarization: -23.72 SS G_CDS: 0.16 Total: -23.56 kcal Atomic # 14 Polarization: 21.06 SS G_CDS: -5.02 Total: 16.03 kcal Atomic # 16 Polarization: 1.30 SS G_CDS: -2.38 Total: -1.08 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -33.37 -8.46 -41.83 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122711170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -0.265 kcal (2) G-P(sol) polarization free energy of solvation -33.373 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.639 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.460 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.834 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds