Wall clock time and date at job start Tue Mar 31 2020 09:37:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.37467 * 123.35496 * 2 1 4 4 C 1.33812 * 115.10037 * 179.76675 * 3 2 1 5 5 S 1.70610 * 110.95762 * 0.48949 * 4 3 2 6 6 C 1.36648 * 123.34854 * 180.29761 * 2 1 3 7 7 C 1.46582 * 125.45810 * 0.02562 * 6 2 1 8 8 O 1.21703 * 120.00181 * 359.97438 * 7 6 2 9 9 N 1.34783 * 120.00138 * 180.02562 * 7 6 2 10 10 C 1.46497 * 120.00147 * 179.97438 * 9 7 6 11 11 C 1.53006 * 109.47103 * 179.97438 * 10 9 7 12 12 N 1.46892 * 109.47018 * 180.02562 * 11 10 9 13 13 C 1.46900 * 110.99977 * 180.02562 * 12 11 10 14 14 C 1.50705 * 109.47064 * 180.02562 * 13 12 11 15 15 O 1.21290 * 120.00130 * 359.97438 * 14 13 12 16 16 N 1.34780 * 119.99859 * 179.97438 * 14 13 12 17 17 C 1.37096 * 120.00095 * 179.97438 * 16 14 13 18 18 H 1.07997 * 119.99523 * 0.02562 * 17 16 14 19 19 C 1.38947 * 120.00032 * 180.02562 * 17 16 14 20 20 N 1.31410 * 120.00008 * 359.97438 * 19 17 16 21 21 Si 1.86799 * 120.00006 * 179.97438 * 19 17 16 22 22 H 1.48501 * 109.46889 * 89.99753 * 21 19 17 23 23 H 1.48497 * 109.46927 * 209.99667 * 21 19 17 24 24 H 1.48498 * 109.46954 * 330.00224 * 21 19 17 25 25 H 1.08999 * 109.47015 * 269.70656 * 1 2 3 26 26 H 1.09000 * 109.46646 * 29.69809 * 1 2 3 27 27 H 1.09000 * 109.47248 * 149.70526 * 1 2 3 28 28 H 1.08003 * 122.44545 * 0.02562 * 3 2 1 29 29 H 1.08010 * 124.52049 * 180.22094 * 4 3 2 30 30 H 0.96998 * 119.99396 * 359.97438 * 9 7 6 31 31 H 1.09001 * 109.47465 * 300.00367 * 10 9 7 32 32 H 1.09006 * 109.46916 * 60.00310 * 10 9 7 33 33 H 1.08996 * 109.47042 * 300.00249 * 11 10 9 34 34 H 1.09000 * 109.46551 * 60.00725 * 11 10 9 35 35 H 1.00899 * 111.00073 * 56.04635 * 12 11 10 36 36 H 1.09001 * 109.46673 * 299.99620 * 13 12 11 37 37 H 1.09001 * 109.47363 * 59.99775 * 13 12 11 38 38 H 0.97000 * 119.99744 * 0.02562 * 16 14 13 39 39 H 0.96998 * 120.00118 * 180.02562 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2629 1.1482 0.0000 4 6 3.5871 0.9561 0.0049 5 16 3.9624 -0.7082 -0.0037 6 6 2.2583 -1.1415 -0.0059 7 6 1.7283 -2.5081 -0.0136 8 8 0.5257 -2.6945 -0.0146 9 7 2.5730 -3.5584 -0.0184 10 6 2.0434 -4.9243 -0.0255 11 6 3.2040 -5.9213 -0.0306 12 7 2.6729 -7.2909 -0.0383 13 6 3.7613 -8.2775 -0.0428 14 6 3.1791 -9.6675 -0.0513 15 8 1.9760 -9.8212 -0.0529 16 7 3.9955 -10.7400 -0.0570 17 6 3.4660 -12.0045 -0.0642 18 1 2.3947 -12.1413 -0.0657 19 6 4.3075 -13.1101 -0.0696 20 7 5.6111 -12.9436 -0.0683 21 14 3.5860 -14.8331 -0.0787 22 1 3.3953 -15.2825 -1.4812 23 1 4.5131 -15.7616 0.6168 24 1 2.2762 -14.8249 0.6209 25 1 -0.3633 -0.0053 1.0276 26 1 -0.3632 0.8927 -0.5092 27 1 -0.3634 -0.8873 -0.5184 28 1 1.8202 2.1334 0.0004 29 1 4.3206 1.7489 0.0091 30 1 3.5315 -3.4099 -0.0173 31 1 1.4325 -5.0818 0.8634 32 1 1.4334 -5.0728 -0.9166 33 1 3.8144 -5.7637 -0.9197 34 1 3.8143 -5.7729 0.8603 35 1 2.0519 -7.4335 -0.8207 36 1 4.3761 -8.1361 -0.9316 37 1 4.3750 -8.1456 0.8483 38 1 4.9577 -10.6171 -0.0553 39 1 6.1986 -13.7154 -0.0725 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001122711170.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:37:44 Heat of formation + Delta-G solvation = -68.216939 kcal Electronic energy + Delta-G solvation = -21690.718708 eV Core-core repulsion = 18144.678923 eV Total energy + Delta-G solvation = -3546.039785 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -40.98707 -40.16049 -38.88631 -37.43908 -36.00806 -35.27766 -33.27239 -31.96912 -30.99195 -29.06313 -27.47733 -25.63389 -24.46574 -23.25139 -22.40423 -21.10831 -20.05704 -19.87696 -19.13109 -17.82719 -17.28465 -17.03707 -16.87439 -16.56736 -16.34225 -16.03683 -15.71571 -15.44520 -15.00345 -14.87765 -14.56377 -14.39606 -13.99341 -13.96549 -13.52625 -13.34841 -13.25867 -13.06774 -12.93813 -12.71621 -12.61503 -12.45120 -12.41049 -12.12194 -11.86024 -11.51045 -11.07540 -10.37128 -10.33243 -10.01687 -9.76008 -9.39856 -9.37711 -8.46913 -5.95485 -0.49914 0.50922 0.92733 1.38138 1.38627 1.42220 1.54874 1.91500 2.05066 2.10560 2.30385 3.00803 3.20447 3.54020 3.73281 3.90757 3.98314 4.08797 4.25044 4.31465 4.39634 4.44018 4.50127 4.60782 4.66353 4.77157 4.85902 4.90717 4.99853 5.06904 5.23510 5.38519 5.41188 5.51762 5.83161 6.06267 6.31013 6.36792 6.60090 7.06135 7.12662 7.56055 8.11726 8.70353 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.041111 B = 0.001846 C = 0.001770 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 680.915065 B =15165.145681 C =15812.979096 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.028 4.028 3 C -0.161 4.161 4 C -0.213 4.213 5 S 0.233 5.767 6 C -0.314 4.314 7 C 0.586 3.414 8 O -0.565 6.565 9 N -0.713 5.713 10 C 0.129 3.871 11 C 0.058 3.942 12 N -0.685 5.685 13 C 0.068 3.932 14 C 0.435 3.565 15 O -0.625 6.625 16 N -0.572 5.572 17 C -0.335 4.335 18 H 0.078 0.922 19 C -0.013 4.013 20 N -0.919 5.919 21 Si 0.993 3.007 22 H -0.271 1.271 23 H -0.270 1.270 24 H -0.275 1.275 25 H 0.074 0.926 26 H 0.087 0.913 27 H 0.066 0.934 28 H 0.167 0.833 29 H 0.201 0.799 30 H 0.410 0.590 31 H 0.063 0.937 32 H 0.061 0.939 33 H 0.058 0.942 34 H 0.094 0.906 35 H 0.347 0.653 36 H 0.074 0.926 37 H 0.110 0.890 38 H 0.398 0.602 39 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.262 30.588 -0.856 30.774 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.044 4.044 3 C -0.192 4.192 4 C -0.351 4.351 5 S 0.501 5.499 6 C -0.434 4.434 7 C 0.374 3.626 8 O -0.447 6.447 9 N -0.366 5.366 10 C 0.005 3.995 11 C -0.071 4.071 12 N -0.318 5.318 13 C -0.064 4.064 14 C 0.223 3.777 15 O -0.512 6.512 16 N -0.209 5.209 17 C -0.464 4.464 18 H 0.096 0.904 19 C -0.212 4.212 20 N -0.560 5.560 21 Si 0.816 3.184 22 H -0.196 1.196 23 H -0.195 1.195 24 H -0.199 1.199 25 H 0.093 0.907 26 H 0.106 0.894 27 H 0.085 0.915 28 H 0.184 0.816 29 H 0.218 0.782 30 H 0.247 0.753 31 H 0.081 0.919 32 H 0.079 0.921 33 H 0.076 0.924 34 H 0.112 0.888 35 H 0.165 0.835 36 H 0.091 0.909 37 H 0.128 0.872 38 H 0.232 0.768 39 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges 3.117 29.329 -0.178 29.495 hybrid contribution -0.534 -0.037 -0.847 1.002 sum 2.583 29.292 -1.026 29.423 Atomic orbital electron populations 1.20715 0.89059 1.03692 1.02989 1.19832 0.98170 0.91201 0.95185 1.20122 0.92877 0.99909 1.06277 1.25732 1.01044 1.02218 1.06099 1.82805 1.01053 0.98764 1.67251 1.24365 0.99726 0.96290 1.23039 1.17267 0.85770 0.83889 0.75689 1.90782 1.16034 1.85987 1.51865 1.45613 1.10210 1.05432 1.75322 1.21107 0.96473 0.79590 1.02314 1.22071 0.95631 0.86471 1.02971 1.59882 1.18494 1.01691 1.51742 1.21534 0.93263 0.87962 1.03676 1.20930 0.87030 0.87533 0.82253 1.90504 1.16792 1.87213 1.56677 1.41916 1.09083 1.04944 1.64986 1.19660 0.93578 0.83222 1.49989 0.90436 1.26027 0.95504 1.03441 0.96269 1.69662 1.02908 1.33149 1.50240 0.84933 0.77922 0.76863 0.78648 1.19607 1.19466 1.19948 0.90732 0.89426 0.91479 0.81555 0.78195 0.75320 0.91888 0.92075 0.92425 0.88781 0.83475 0.90852 0.87228 0.76827 0.91265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.91 9.55 71.24 0.68 -1.23 16 2 C -0.03 -0.49 5.90 -20.42 -0.12 -0.61 16 3 C -0.16 -1.89 9.97 21.08 0.21 -1.68 16 4 C -0.21 -1.88 10.92 66.81 0.73 -1.16 16 5 S 0.23 2.57 22.16 -56.49 -1.25 1.32 16 6 C -0.31 -6.03 6.45 24.08 0.16 -5.88 16 7 C 0.59 14.35 7.78 86.42 0.67 15.02 16 8 O -0.57 -18.12 14.24 -4.36 -0.06 -18.18 16 9 N -0.71 -14.06 5.55 -467.15 -2.59 -16.65 16 10 C 0.13 2.97 5.93 86.38 0.51 3.48 16 11 C 0.06 1.20 5.80 86.31 0.50 1.70 16 12 N -0.69 -20.89 6.13 -517.93 -3.17 -24.07 16 13 C 0.07 2.21 6.17 85.56 0.53 2.74 16 14 C 0.43 20.56 7.82 87.66 0.69 21.24 16 15 O -0.63 -34.99 15.78 -3.06 -0.05 -35.04 16 16 N -0.57 -29.13 5.29 -306.98 -1.62 -30.76 16 17 C -0.33 -19.07 9.68 84.04 0.81 -18.25 16 18 H 0.08 4.73 7.16 -2.91 -0.02 4.71 16 19 C -0.01 -0.67 5.50 84.93 0.47 -0.20 16 20 N -0.92 -49.20 13.05 21.66 0.28 -48.92 16 21 Si 0.99 43.00 29.55 68.60 2.03 45.03 16 22 H -0.27 -11.36 7.11 99.48 0.71 -10.65 16 23 H -0.27 -11.04 7.11 99.48 0.71 -10.33 16 24 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 25 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 26 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 27 H 0.07 1.60 6.01 -2.39 -0.01 1.58 16 28 H 0.17 1.15 8.06 -2.91 -0.02 1.12 16 29 H 0.20 0.47 8.06 -2.91 -0.02 0.45 16 30 H 0.41 5.59 7.59 -92.71 -0.70 4.89 16 31 H 0.06 1.72 8.14 -2.39 -0.02 1.70 16 32 H 0.06 1.54 8.14 -2.38 -0.02 1.52 16 33 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 34 H 0.09 1.70 8.14 -2.39 -0.02 1.68 16 35 H 0.35 11.28 8.43 -89.69 -0.76 10.53 16 36 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 37 H 0.11 3.13 8.14 -2.39 -0.02 3.11 16 38 H 0.40 19.00 7.90 -92.71 -0.73 18.27 16 39 H 0.28 13.91 8.31 -92.71 -0.77 13.14 16 Total: -1.00 -74.68 351.19 -1.69 -76.37 By element: Atomic # 1 Polarization: 36.79 SS G_CDS: -1.08 Total: 35.71 kcal Atomic # 6 Polarization: 9.35 SS G_CDS: 5.83 Total: 15.18 kcal Atomic # 7 Polarization: -113.28 SS G_CDS: -7.11 Total: -120.39 kcal Atomic # 8 Polarization: -53.11 SS G_CDS: -0.11 Total: -53.22 kcal Atomic # 14 Polarization: 43.00 SS G_CDS: 2.03 Total: 45.03 kcal Atomic # 16 Polarization: 2.57 SS G_CDS: -1.25 Total: 1.32 kcal Total: -74.68 -1.69 -76.37 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001122711170.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.152 kcal (2) G-P(sol) polarization free energy of solvation -74.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.532 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.685 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.369 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.217 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds