Wall clock time and date at job start Tue Mar 31 2020 10:35:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99978 * 273.81895 * 5 4 3 7 7 H 1.08000 * 119.99789 * 185.99802 * 6 5 4 8 8 C 1.38807 * 119.99859 * 5.99467 * 6 5 4 9 9 N 1.31617 * 120.00355 * 13.74537 * 8 6 5 10 10 Si 1.86806 * 120.00035 * 193.74742 * 8 6 5 11 11 H 1.48503 * 109.47033 * 89.99706 * 10 8 6 12 12 H 1.48495 * 109.47540 * 210.00080 * 10 8 6 13 13 H 1.48505 * 109.46781 * 330.00108 * 10 8 6 14 14 C 1.46497 * 120.00083 * 93.82177 * 5 4 3 15 15 C 1.50702 * 109.47358 * 96.73055 * 14 5 4 16 16 C 1.38278 * 119.93406 * 95.11204 * 15 14 5 17 17 C 1.38500 * 120.04628 * 179.79294 * 16 15 14 18 18 C 1.39303 * 119.84387 * 0.47962 * 17 16 15 19 19 C 1.38500 * 119.84583 * 359.75447 * 18 17 16 20 20 C 1.38305 * 119.93522 * 275.38981 * 15 14 5 21 21 Cl 1.73595 * 119.94520 * 359.97438 * 20 15 14 22 22 O 1.36511 * 108.63105 * 179.72649 * 18 17 16 23 23 C 1.43980 * 105.48838 * 17.29298 * 22 18 17 24 24 O 1.36527 * 131.52488 * 180.14338 * 17 16 15 25 25 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46522 * 299.99898 * 1 2 3 27 27 H 1.08996 * 109.47201 * 59.99269 * 1 2 3 28 28 H 1.08997 * 109.46955 * 240.00521 * 2 1 3 29 29 H 1.08997 * 109.47460 * 119.99993 * 2 1 3 30 30 H 1.09006 * 109.47326 * 60.00595 * 3 2 1 31 31 H 1.08996 * 109.47667 * 300.00446 * 3 2 1 32 32 H 1.08997 * 109.46955 * 60.00521 * 4 3 2 33 33 H 1.09002 * 109.47869 * 300.00170 * 4 3 2 34 34 H 0.97005 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47223 * 336.73417 * 14 5 4 36 36 H 1.09005 * 109.47409 * 216.73058 * 14 5 4 37 37 H 1.08004 * 119.97955 * 0.02562 * 16 15 14 38 38 H 1.07994 * 119.99364 * 180.02562 * 19 18 17 39 39 H 1.08996 * 110.57120 * 91.43027 * 23 22 18 40 40 H 1.09001 * 110.56766 * 214.29818 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2116 3.4963 -1.1830 7 1 4.6619 4.4779 -1.1916 8 6 3.7883 2.9164 -2.3709 9 7 3.0052 1.8588 -2.3446 10 14 4.3300 3.6369 -4.0071 11 1 5.5988 2.9947 -4.4349 12 1 3.2810 3.3895 -5.0286 13 1 4.5409 5.0993 -3.8584 14 6 4.3828 3.4854 1.2661 15 6 5.8642 3.3809 1.5224 16 6 6.7035 4.4147 1.1497 17 6 8.0647 4.3230 1.3881 18 6 8.5870 3.1830 1.9947 19 6 7.7420 2.1487 2.3614 20 6 6.3822 2.2488 2.1247 21 17 5.3249 0.9511 2.5847 22 8 9.9389 3.3321 2.1125 23 6 10.1863 4.7406 1.9459 24 8 9.0896 5.1861 1.1261 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9564 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 2.7091 1.4538 -3.1749 35 1 3.8387 3.0029 2.0781 36 1 4.0968 4.5358 1.2109 37 1 6.2968 5.2959 0.6759 38 1 8.1443 1.2640 2.8323 39 1 10.1743 5.2483 2.9104 40 1 11.1362 4.9050 1.4372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001138244643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:28 Heat of formation + Delta-G solvation = -13.656127 kcal Electronic energy + Delta-G solvation = -24088.076722 eV Core-core repulsion = 20510.066414 eV Total energy + Delta-G solvation = -3578.010308 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.02001 -38.31650 -36.21910 -36.06665 -35.88428 -33.41855 -31.86324 -30.25237 -29.60842 -27.80400 -26.24481 -25.09038 -23.55361 -22.77665 -21.99539 -20.57818 -19.69934 -17.90588 -17.49876 -17.37256 -16.45831 -16.05863 -15.19513 -14.67440 -14.37225 -14.10744 -13.93307 -13.71683 -13.70030 -13.19131 -13.01654 -12.90058 -12.77599 -12.35872 -11.94132 -11.76591 -11.45301 -11.39287 -11.08454 -10.97506 -10.76787 -10.49867 -10.31587 -10.28963 -10.01577 -9.88974 -9.70575 -9.50605 -9.02842 -8.57783 -8.21444 -7.76035 -6.79981 -5.61728 -3.07400 1.25670 1.40273 2.31642 2.98604 3.40425 3.47370 3.48418 3.53852 3.71823 4.52461 4.63487 4.64615 4.86434 5.18087 5.23780 5.29720 5.51022 5.59987 5.67151 5.90659 5.98784 6.02531 6.05035 6.12749 6.17956 6.34255 6.46932 6.55447 6.57685 6.68476 6.82219 6.86914 6.94180 7.09800 7.22867 7.37720 7.50400 7.69305 7.98189 8.35637 8.43661 9.31607 9.88071 10.30689 11.30831 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.005378 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.378061 B = 5204.942128 C = 6846.444034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.111 4.111 3 C -0.117 4.117 4 C 0.163 3.837 5 N -0.585 5.585 6 C -0.244 4.244 7 H 0.073 0.927 8 C -0.003 4.003 9 N -0.896 5.896 10 Si 0.901 3.099 11 H -0.290 1.290 12 H -0.292 1.292 13 H -0.283 1.283 14 C 0.182 3.818 15 C -0.055 4.055 16 C -0.075 4.075 17 C 0.034 3.966 18 C 0.020 3.980 19 C -0.095 4.095 20 C -0.023 4.023 21 Cl -0.049 7.049 22 O -0.311 6.311 23 C 0.214 3.786 24 O -0.309 6.309 25 H 0.036 0.964 26 H 0.041 0.959 27 H 0.051 0.949 28 H 0.058 0.942 29 H 0.033 0.967 30 H 0.008 0.992 31 H 0.107 0.893 32 H 0.086 0.914 33 H 0.022 0.978 34 H 0.249 0.751 35 H 0.063 0.937 36 H 0.056 0.944 37 H 0.140 0.860 38 H 0.137 0.863 39 H 0.080 0.920 40 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.078 1.506 10.575 12.814 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.150 4.150 3 C -0.156 4.156 4 C 0.039 3.961 5 N -0.303 5.303 6 C -0.372 4.372 7 H 0.090 0.910 8 C -0.199 4.199 9 N -0.543 5.543 10 Si 0.732 3.268 11 H -0.218 1.218 12 H -0.219 1.219 13 H -0.208 1.208 14 C 0.053 3.947 15 C -0.060 4.060 16 C -0.095 4.095 17 C -0.011 4.011 18 C -0.024 4.024 19 C -0.115 4.115 20 C -0.050 4.050 21 Cl -0.020 7.020 22 O -0.227 6.227 23 C 0.102 3.898 24 O -0.225 6.225 25 H 0.055 0.945 26 H 0.060 0.940 27 H 0.070 0.930 28 H 0.077 0.923 29 H 0.052 0.948 30 H 0.027 0.973 31 H 0.125 0.875 32 H 0.104 0.896 33 H 0.039 0.961 34 H 0.060 0.940 35 H 0.082 0.918 36 H 0.074 0.926 37 H 0.158 0.842 38 H 0.155 0.845 39 H 0.098 0.902 40 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 7.068 1.336 10.320 12.580 hybrid contribution 0.604 0.294 -0.934 1.151 sum 7.672 1.630 9.386 12.232 Atomic orbital electron populations 1.21732 0.97809 0.99579 1.00999 1.21360 0.93918 0.99768 0.99904 1.22372 0.98599 0.93562 1.01044 1.21237 0.92099 0.83616 0.99150 1.44165 1.74060 1.11875 1.00235 1.19304 1.33388 1.00279 0.84273 0.90955 1.24740 0.99120 0.98475 0.97599 1.70218 1.35349 1.23970 1.24732 0.86294 0.77946 0.78331 0.84237 1.21779 1.21893 1.20833 1.19799 0.86430 0.98098 0.90337 1.20998 1.01189 0.90531 0.93320 1.19909 0.87319 1.00624 1.01654 1.19872 0.90439 0.89743 1.01009 1.19333 0.82525 0.96674 1.03881 1.19646 0.90023 0.98483 1.03302 1.20191 0.89850 0.91528 1.03462 1.98347 1.64847 1.48146 1.90647 1.87317 1.19461 1.26269 1.89690 1.25543 0.91855 0.77420 0.95009 1.87365 1.20913 1.51456 1.62784 0.94483 0.93967 0.92998 0.92316 0.94846 0.97326 0.87482 0.89600 0.96050 0.94010 0.91838 0.92586 0.84184 0.84490 0.90237 0.85549 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.43 9.91 37.16 0.37 -2.06 16 2 C -0.11 -2.15 5.93 -26.73 -0.16 -2.31 16 3 C -0.12 -2.59 4.84 -26.73 -0.13 -2.72 16 4 C 0.16 3.76 4.91 -4.04 -0.02 3.74 16 5 N -0.58 -13.61 2.54 -174.61 -0.44 -14.05 16 6 C -0.24 -6.25 9.75 -15.06 -0.15 -6.40 16 7 H 0.07 1.83 7.87 -52.49 -0.41 1.41 16 8 C 0.00 -0.09 5.22 -17.43 -0.09 -0.18 16 9 N -0.90 -23.83 7.40 55.49 0.41 -23.42 16 10 Si 0.90 21.46 29.58 -169.99 -5.03 16.44 16 11 H -0.29 -7.10 7.11 56.52 0.40 -6.69 16 12 H -0.29 -7.06 7.11 56.52 0.40 -6.66 16 13 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 14 C 0.18 3.52 5.36 -5.19 -0.03 3.49 16 15 C -0.06 -1.00 5.41 -104.58 -0.57 -1.56 16 16 C -0.08 -1.30 9.69 -39.47 -0.38 -1.69 16 17 C 0.03 0.56 7.15 -39.09 -0.28 0.28 16 18 C 0.02 0.33 7.15 -39.09 -0.28 0.05 16 19 C -0.10 -1.49 9.84 -39.43 -0.39 -1.88 16 20 C -0.02 -0.38 6.31 -39.50 -0.25 -0.63 16 21 Cl -0.05 -0.80 24.32 -51.86 -1.26 -2.06 16 22 O -0.31 -4.49 11.40 -45.73 -0.52 -5.01 16 23 C 0.21 2.38 8.89 101.05 0.90 3.28 16 24 O -0.31 -4.67 11.40 -45.78 -0.52 -5.19 16 25 H 0.04 0.55 8.14 -51.93 -0.42 0.12 16 26 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 28 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 29 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 30 H 0.01 0.18 8.14 -51.93 -0.42 -0.25 16 31 H 0.11 2.74 5.86 -51.93 -0.30 2.43 16 32 H 0.09 2.27 5.99 -51.93 -0.31 1.96 16 33 H 0.02 0.45 4.55 -51.93 -0.24 0.22 16 34 H 0.25 6.58 8.31 -40.82 -0.34 6.24 16 35 H 0.06 1.17 7.01 -51.93 -0.36 0.80 16 36 H 0.06 1.04 8.00 -51.93 -0.42 0.63 16 37 H 0.14 2.31 8.06 -52.48 -0.42 1.89 16 38 H 0.14 1.86 8.06 -52.49 -0.42 1.43 16 39 H 0.08 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.13 0.99 8.14 -51.93 -0.42 0.57 16 LS Contribution 337.16 15.07 5.08 5.08 Total: -1.00 -27.84 337.16 -9.14 -36.98 By element: Atomic # 1 Polarization: 5.23 SS G_CDS: -5.41 Total: -0.18 kcal Atomic # 6 Polarization: -7.13 SS G_CDS: -1.45 Total: -8.58 kcal Atomic # 7 Polarization: -37.44 SS G_CDS: -0.03 Total: -37.47 kcal Atomic # 8 Polarization: -9.16 SS G_CDS: -1.04 Total: -10.21 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.03 Total: 16.44 kcal Atomic # 17 Polarization: -0.80 SS G_CDS: -1.26 Total: -2.06 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -27.84 -9.14 -36.98 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138244643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 23.322 kcal (2) G-P(sol) polarization free energy of solvation -27.838 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.515 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.141 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.656 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds