Wall clock time and date at job start Tue Mar 31 2020 10:35:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53000 * 109.47147 * 2 1 4 4 C 1.52999 * 109.47147 * 180.02562 * 3 2 1 5 5 N 1.46501 * 109.47134 * 180.02562 * 4 3 2 6 6 C 1.36941 * 119.99978 * 273.81895 * 5 4 3 7 7 H 1.08000 * 119.99789 * 185.99802 * 6 5 4 8 8 C 1.38807 * 119.99859 * 5.99467 * 6 5 4 9 9 N 1.31617 * 120.00355 * 13.74537 * 8 6 5 10 10 Si 1.86806 * 120.00035 * 193.74742 * 8 6 5 11 11 H 1.48503 * 109.47033 * 89.99706 * 10 8 6 12 12 H 1.48495 * 109.47540 * 210.00080 * 10 8 6 13 13 H 1.48505 * 109.46781 * 330.00108 * 10 8 6 14 14 C 1.46497 * 120.00083 * 93.82177 * 5 4 3 15 15 C 1.50702 * 109.47358 * 96.73055 * 14 5 4 16 16 C 1.38278 * 119.93406 * 95.11204 * 15 14 5 17 17 C 1.38500 * 120.04628 * 179.79294 * 16 15 14 18 18 C 1.39303 * 119.84387 * 0.47962 * 17 16 15 19 19 C 1.38500 * 119.84583 * 359.75447 * 18 17 16 20 20 C 1.38305 * 119.93522 * 275.38981 * 15 14 5 21 21 Cl 1.73595 * 119.94520 * 359.97438 * 20 15 14 22 22 O 1.36511 * 108.63105 * 179.72649 * 18 17 16 23 23 C 1.43980 * 105.48838 * 17.29298 * 22 18 17 24 24 O 1.36527 * 131.52488 * 180.14338 * 17 16 15 25 25 H 1.08998 * 109.47169 * 180.02562 * 1 2 3 26 26 H 1.09006 * 109.46522 * 299.99898 * 1 2 3 27 27 H 1.08996 * 109.47201 * 59.99269 * 1 2 3 28 28 H 1.08997 * 109.46955 * 240.00521 * 2 1 3 29 29 H 1.08997 * 109.47460 * 119.99993 * 2 1 3 30 30 H 1.09006 * 109.47326 * 60.00595 * 3 2 1 31 31 H 1.08996 * 109.47667 * 300.00446 * 3 2 1 32 32 H 1.08997 * 109.46955 * 60.00521 * 4 3 2 33 33 H 1.09002 * 109.47869 * 300.00170 * 4 3 2 34 34 H 0.97005 * 119.99938 * 179.97438 * 9 8 6 35 35 H 1.09002 * 109.47223 * 336.73417 * 14 5 4 36 36 H 1.09005 * 109.47409 * 216.73058 * 14 5 4 37 37 H 1.08004 * 119.97955 * 0.02562 * 16 15 14 38 38 H 1.07994 * 119.99364 * 180.02562 * 19 18 17 39 39 H 1.08996 * 110.57120 * 91.43027 * 23 22 18 40 40 H 1.09001 * 110.56766 * 214.29818 * 23 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 3.5700 1.4425 -0.0006 5 7 4.0583 2.8237 0.0000 6 6 4.2116 3.4963 -1.1830 7 1 4.6619 4.4779 -1.1916 8 6 3.7883 2.9164 -2.3709 9 7 3.0052 1.8588 -2.3446 10 14 4.3300 3.6369 -4.0071 11 1 5.5988 2.9947 -4.4349 12 1 3.2810 3.3895 -5.0286 13 1 4.5409 5.0993 -3.8584 14 6 4.3828 3.4854 1.2661 15 6 5.8642 3.3809 1.5224 16 6 6.7035 4.4147 1.1497 17 6 8.0647 4.3230 1.3881 18 6 8.5870 3.1830 1.9947 19 6 7.7420 2.1487 2.3614 20 6 6.3822 2.2488 2.1247 21 17 5.3249 0.9511 2.5847 22 8 9.9389 3.3321 2.1125 23 6 10.1863 4.7406 1.9459 24 8 9.0896 5.1861 1.1261 25 1 -0.3633 -1.0276 0.0005 26 1 -0.3632 0.5139 0.8901 27 1 -0.3633 0.5139 -0.8899 28 1 1.8933 -0.5137 -0.8900 29 1 1.8934 -0.5138 0.8899 30 1 1.6768 1.9564 0.8901 31 1 1.6767 1.9564 -0.8899 32 1 3.9329 0.9289 -0.8909 33 1 3.9338 0.9285 0.8891 34 1 2.7091 1.4538 -3.1749 35 1 3.8387 3.0029 2.0781 36 1 4.0968 4.5358 1.2109 37 1 6.2968 5.2959 0.6759 38 1 8.1443 1.2640 2.8323 39 1 10.1743 5.2483 2.9104 40 1 11.1362 4.9050 1.4372 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001138244643.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:27 Heat of formation + Delta-G solvation = -26.923053 kcal Electronic energy + Delta-G solvation = -24088.652020 eV Core-core repulsion = 20510.066414 eV Total energy + Delta-G solvation = -3578.585605 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -43.16318 -39.67168 -37.78892 -37.32575 -37.19677 -34.99793 -33.59100 -31.69952 -30.98021 -29.42859 -27.59662 -26.39267 -25.19745 -24.06651 -23.41393 -22.17698 -21.41686 -19.10514 -18.92666 -18.47835 -18.08984 -17.25363 -17.02327 -15.88677 -15.81576 -15.56717 -15.37268 -15.34000 -14.95503 -14.82969 -14.51571 -14.14921 -14.00045 -13.77427 -13.44796 -13.20141 -13.02894 -12.88432 -12.81316 -12.50836 -12.36001 -12.22746 -11.90198 -11.81364 -11.68403 -11.50535 -11.30003 -11.20251 -10.78966 -10.12557 -9.85454 -9.05221 -8.62720 -7.58307 -5.04003 -0.04079 0.11361 1.03559 1.48361 1.52320 1.56898 1.84679 2.36678 2.52833 2.60986 3.39576 3.41663 3.79324 3.85091 3.93756 4.00073 4.08534 4.21895 4.42347 4.43541 4.53530 4.64393 4.67141 4.80091 4.92040 4.96653 4.98904 5.08201 5.15653 5.17145 5.24129 5.38438 5.42244 5.45226 5.64409 5.71834 5.76274 6.03655 6.07556 6.47946 6.51712 7.36075 8.02151 8.40041 9.31258 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.013277 B = 0.005378 C = 0.004089 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2108.378061 B = 5204.942128 C = 6846.444034 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.106 4.106 3 C -0.107 4.107 4 C 0.170 3.830 5 N -0.599 5.599 6 C -0.245 4.245 7 H 0.072 0.928 8 C -0.050 4.050 9 N -0.908 5.908 10 Si 0.949 3.051 11 H -0.299 1.299 12 H -0.298 1.298 13 H -0.276 1.276 14 C 0.184 3.816 15 C -0.069 4.069 16 C -0.085 4.085 17 C 0.028 3.972 18 C 0.024 3.976 19 C -0.094 4.094 20 C -0.028 4.028 21 Cl -0.045 7.045 22 O -0.318 6.318 23 C 0.204 3.796 24 O -0.323 6.323 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.048 0.952 30 H 0.010 0.990 31 H 0.073 0.927 32 H 0.049 0.951 33 H 0.041 0.959 34 H 0.240 0.760 35 H 0.072 0.928 36 H 0.060 0.940 37 H 0.141 0.859 38 H 0.159 0.841 39 H 0.110 0.890 40 H 0.163 0.837 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.336 1.620 12.004 14.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.145 4.145 3 C -0.147 4.147 4 C 0.046 3.954 5 N -0.319 5.319 6 C -0.374 4.374 7 H 0.090 0.910 8 C -0.244 4.244 9 N -0.556 5.556 10 Si 0.781 3.219 11 H -0.227 1.227 12 H -0.225 1.225 13 H -0.202 1.202 14 C 0.057 3.943 15 C -0.073 4.073 16 C -0.105 4.105 17 C -0.017 4.017 18 C -0.021 4.021 19 C -0.113 4.113 20 C -0.056 4.056 21 Cl -0.016 7.016 22 O -0.234 6.234 23 C 0.094 3.906 24 O -0.239 6.239 25 H 0.079 0.921 26 H 0.071 0.929 27 H 0.058 0.942 28 H 0.059 0.941 29 H 0.067 0.933 30 H 0.029 0.971 31 H 0.092 0.908 32 H 0.068 0.932 33 H 0.058 0.942 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.078 0.922 37 H 0.159 0.841 38 H 0.177 0.823 39 H 0.128 0.872 40 H 0.180 0.820 Dipole moment (debyes) X Y Z Total from point charges 8.354 1.476 11.785 14.521 hybrid contribution 0.368 0.330 -1.263 1.357 sum 8.723 1.807 10.522 13.786 Atomic orbital electron populations 1.21663 0.95747 1.01161 1.00932 1.21281 0.95754 0.97698 0.99726 1.22174 0.98093 0.95098 0.99293 1.21076 0.92539 0.83620 0.98165 1.44272 1.74862 1.11892 1.00864 1.19496 1.32307 1.00329 0.85317 0.91022 1.25272 1.00017 0.99443 0.99670 1.70412 1.36186 1.24755 1.24253 0.85522 0.76744 0.77966 0.81711 1.22747 1.22532 1.20169 1.19841 0.87566 0.97998 0.88937 1.20731 1.00099 0.91526 0.94965 1.19933 0.88005 1.00663 1.01910 1.19914 0.90538 0.90397 1.00804 1.19476 0.83359 0.96303 1.02964 1.19838 0.89457 0.99195 1.02855 1.20277 0.90565 0.91224 1.03544 1.98339 1.64902 1.47849 1.90482 1.87310 1.18242 1.28344 1.89529 1.26189 0.91926 0.75855 0.96662 1.87345 1.21349 1.51526 1.63723 0.92081 0.92881 0.94210 0.94055 0.93344 0.97141 0.90841 0.93230 0.94153 0.94981 0.90962 0.92218 0.84129 0.82302 0.87236 0.81996 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.46 9.91 71.98 0.71 -3.75 16 2 C -0.11 -4.06 5.93 30.59 0.18 -3.88 16 3 C -0.11 -4.79 4.84 30.59 0.15 -4.65 16 4 C 0.17 7.93 4.91 86.38 0.42 8.36 16 5 N -0.60 -28.09 2.54 -706.34 -1.79 -29.89 16 6 C -0.24 -12.72 9.75 84.03 0.82 -11.90 16 7 H 0.07 3.65 7.87 -2.91 -0.02 3.63 16 8 C -0.05 -2.67 5.22 84.86 0.44 -2.23 16 9 N -0.91 -49.75 7.40 21.65 0.16 -49.59 16 10 Si 0.95 44.95 29.58 68.60 2.03 46.98 16 11 H -0.30 -14.49 7.11 99.48 0.71 -13.78 16 12 H -0.30 -14.28 7.11 99.48 0.71 -13.58 16 13 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 14 C 0.18 7.05 5.36 85.63 0.46 7.51 16 15 C -0.07 -2.44 5.41 -19.84 -0.11 -2.54 16 16 C -0.09 -2.91 9.69 22.34 0.22 -2.69 16 17 C 0.03 0.90 7.15 22.59 0.16 1.06 16 18 C 0.02 0.72 7.15 22.59 0.16 0.88 16 19 C -0.09 -2.78 9.84 22.37 0.22 -2.56 16 20 C -0.03 -0.93 6.31 22.32 0.14 -0.79 16 21 Cl -0.04 -1.40 24.32 -2.72 -0.07 -1.46 16 22 O -0.32 -8.28 11.40 -76.18 -0.87 -9.15 16 23 C 0.20 3.88 8.89 113.37 1.01 4.88 16 24 O -0.32 -9.08 11.40 -76.37 -0.87 -9.95 16 25 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 26 H 0.05 1.59 8.14 -2.38 -0.02 1.57 16 27 H 0.04 1.36 8.14 -2.39 -0.02 1.34 16 28 H 0.04 1.71 8.14 -2.39 -0.02 1.69 16 29 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 30 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 31 H 0.07 3.85 5.86 -2.39 -0.01 3.84 16 32 H 0.05 2.69 5.99 -2.39 -0.01 2.68 16 33 H 0.04 1.70 4.55 -2.39 -0.01 1.69 16 34 H 0.24 13.13 8.31 -92.70 -0.77 12.36 16 35 H 0.07 2.60 7.01 -2.39 -0.02 2.59 16 36 H 0.06 2.22 8.00 -2.38 -0.02 2.20 16 37 H 0.14 4.63 8.06 -2.91 -0.02 4.61 16 38 H 0.16 3.90 8.06 -2.91 -0.02 3.88 16 39 H 0.11 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.16 1.88 8.14 -2.39 -0.02 1.86 16 Total: -1.00 -60.19 337.16 4.63 -55.56 By element: Atomic # 1 Polarization: 8.76 SS G_CDS: 1.05 Total: 9.81 kcal Atomic # 6 Polarization: -17.29 SS G_CDS: 4.99 Total: -12.30 kcal Atomic # 7 Polarization: -77.85 SS G_CDS: -1.63 Total: -79.48 kcal Atomic # 8 Polarization: -17.37 SS G_CDS: -1.74 Total: -19.10 kcal Atomic # 14 Polarization: 44.95 SS G_CDS: 2.03 Total: 46.98 kcal Atomic # 17 Polarization: -1.40 SS G_CDS: -0.07 Total: -1.46 kcal Total: -60.19 4.63 -55.56 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001138244643.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 28.635 kcal (2) G-P(sol) polarization free energy of solvation -60.190 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.555 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.632 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.558 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.923 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.65 seconds