Wall clock time and date at job start Tue Mar 31 2020 10:36:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47490 * 2 1 4 4 C 1.52996 * 109.47490 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47440 * 179.97438 * 4 3 2 6 6 C 1.37098 * 119.99998 * 264.05547 * 5 4 3 7 7 H 1.07993 * 119.99956 * 134.65691 * 6 5 4 8 8 C 1.38945 * 119.99643 * 314.65587 * 6 5 4 9 9 N 1.31414 * 120.00379 * 359.53291 * 8 6 5 10 10 Si 1.86809 * 119.99824 * 179.53034 * 8 6 5 11 11 H 1.48500 * 109.46997 * 60.00046 * 10 8 6 12 12 H 1.48503 * 109.46974 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47112 * 300.00047 * 10 8 6 14 14 C 1.34782 * 120.00199 * 84.05187 * 5 4 3 15 15 O 1.21297 * 119.99653 * 4.86905 * 14 5 4 16 16 C 1.50696 * 119.99938 * 184.87120 * 14 5 4 17 17 H 1.08997 * 109.46843 * 52.48137 * 16 14 5 18 18 O 1.42907 * 109.46632 * 172.47590 * 16 14 5 19 19 C 1.50699 * 109.47158 * 292.47747 * 16 14 5 20 20 C 1.38257 * 119.99483 * 102.58984 * 19 16 14 21 21 C 1.38218 * 120.03124 * 179.97438 * 20 19 16 22 22 C 1.38240 * 120.00952 * 359.97438 * 21 20 19 23 23 C 1.38332 * 119.98854 * 359.97438 * 22 21 20 24 24 Cl 1.73592 * 120.01562 * 180.02562 * 23 22 21 25 25 C 1.38194 * 119.99026 * 282.31060 * 19 16 14 26 26 H 1.08995 * 109.47024 * 300.00635 * 1 2 3 27 27 H 1.09007 * 109.46957 * 60.00021 * 1 2 3 28 28 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 239.99704 * 2 1 3 30 30 H 1.09004 * 109.47445 * 119.99826 * 2 1 3 31 31 H 1.08998 * 109.47035 * 59.99474 * 3 2 1 32 32 H 1.09001 * 109.46781 * 299.99576 * 3 2 1 33 33 H 1.08998 * 109.47411 * 59.99704 * 4 3 2 34 34 H 1.09007 * 109.46957 * 299.99979 * 4 3 2 35 35 H 0.96999 * 119.99838 * 180.02562 * 9 8 6 36 36 H 0.96699 * 113.99786 * 60.00359 * 18 16 14 37 37 H 1.08004 * 119.98595 * 359.97438 * 20 19 16 38 38 H 1.07996 * 119.99977 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00667 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01248 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.4034 3.4282 -1.1811 7 1 4.0730 4.4352 -1.3889 8 6 5.1781 2.7454 -2.1107 9 7 5.5878 1.5235 -1.8538 10 14 5.6371 3.5643 -3.7257 11 1 6.4129 4.8004 -3.4510 12 1 6.4610 2.6322 -4.5367 13 1 4.4019 3.9110 -4.4736 14 6 4.1686 3.5001 1.1606 15 8 3.9482 2.9386 2.2130 16 6 4.5655 4.9538 1.1507 17 1 3.9124 5.5041 0.4735 18 8 4.4440 5.4896 2.4699 19 6 5.9934 5.0815 0.6861 20 6 6.2658 5.4923 -0.6056 21 6 7.5751 5.6102 -1.0324 22 6 8.6132 5.3179 -0.1675 23 6 8.3413 4.9079 1.1254 24 17 9.6443 4.5414 2.2122 25 6 7.0303 4.7936 1.5531 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9330 0.9288 0.8909 35 1 6.1290 1.0470 -2.5027 36 1 4.9985 5.0469 3.1269 37 1 5.4551 5.7211 -1.2816 38 1 7.7873 5.9307 -2.0416 39 1 9.6362 5.4105 -0.5009 40 1 6.8175 4.4767 2.5634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001144823268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:30 Heat of formation + Delta-G solvation = -77.393114 kcal Electronic energy + Delta-G solvation = -24511.616032 eV Core-core repulsion = 20930.841881 eV Total energy + Delta-G solvation = -3580.774151 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -39.76180 -38.21659 -36.38420 -35.99344 -34.92477 -34.04439 -31.68331 -31.08284 -30.37982 -28.57037 -26.32053 -24.96504 -22.81598 -22.24186 -21.39521 -20.41152 -19.33546 -17.76539 -17.25952 -16.28254 -15.59405 -15.16318 -14.85932 -14.73228 -14.53745 -14.22200 -13.96872 -13.50342 -13.25472 -13.21288 -12.94983 -12.64934 -12.23373 -12.01572 -11.78695 -11.55516 -11.37188 -11.29281 -11.20325 -11.03165 -10.83856 -10.73700 -10.63384 -10.52418 -10.38465 -10.24900 -10.08506 -9.76237 -9.09638 -8.81768 -8.36917 -8.06103 -7.50156 -6.41133 -4.28489 1.61207 1.67112 2.43461 3.00099 3.08560 3.11466 3.66871 3.98133 4.06525 4.55487 4.87134 5.02342 5.09217 5.19900 5.43437 5.47866 5.50274 5.64873 5.65818 5.73962 5.90036 6.01531 6.09709 6.16020 6.24040 6.26517 6.37411 6.40883 6.56102 6.58294 6.72635 6.73417 6.83292 6.95892 7.10881 7.18085 7.24113 7.51144 7.91221 7.97347 8.24979 8.93811 9.34719 9.79177 10.56599 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.005707 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.583343 B = 4905.083617 C = 6030.564424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.118 4.118 3 C -0.128 4.128 4 C 0.111 3.889 5 N -0.429 5.429 6 C -0.341 4.341 7 H 0.085 0.915 8 C 0.057 3.943 9 N -0.860 5.860 10 Si 0.901 3.099 11 H -0.260 1.260 12 H -0.283 1.283 13 H -0.273 1.273 14 C 0.451 3.549 15 O -0.594 6.594 16 C 0.146 3.854 17 H 0.122 0.878 18 O -0.544 6.544 19 C -0.069 4.069 20 C -0.059 4.059 21 C -0.116 4.116 22 C -0.114 4.114 23 C -0.037 4.037 24 Cl -0.087 7.087 25 C -0.100 4.100 26 H 0.050 0.950 27 H 0.050 0.950 28 H 0.047 0.953 29 H 0.059 0.941 30 H 0.056 0.944 31 H 0.050 0.950 32 H 0.057 0.943 33 H 0.116 0.884 34 H 0.048 0.952 35 H 0.271 0.729 36 H 0.376 0.624 37 H 0.132 0.868 38 H 0.126 0.874 39 H 0.124 0.876 40 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.766 4.590 -0.306 4.928 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.156 4.156 3 C -0.167 4.167 4 C -0.012 4.012 5 N -0.147 5.147 6 C -0.469 4.469 7 H 0.103 0.897 8 C -0.150 4.150 9 N -0.496 5.496 10 Si 0.727 3.273 11 H -0.185 1.185 12 H -0.208 1.208 13 H -0.198 1.198 14 C 0.239 3.761 15 O -0.480 6.480 16 C 0.084 3.916 17 H 0.139 0.861 18 O -0.349 6.349 19 C -0.070 4.070 20 C -0.077 4.077 21 C -0.134 4.134 22 C -0.132 4.132 23 C -0.063 4.063 24 Cl -0.059 7.059 25 C -0.119 4.119 26 H 0.069 0.931 27 H 0.069 0.931 28 H 0.066 0.934 29 H 0.078 0.922 30 H 0.075 0.925 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.134 0.866 34 H 0.067 0.933 35 H 0.082 0.918 36 H 0.225 0.775 37 H 0.149 0.851 38 H 0.144 0.856 39 H 0.142 0.858 40 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 1.472 4.490 -0.099 4.726 hybrid contribution 0.817 -0.303 -0.743 1.145 sum 2.288 4.188 -0.842 4.846 Atomic orbital electron populations 1.21757 0.96690 1.00665 1.01440 1.21413 0.94896 0.97733 1.01604 1.21926 0.98150 0.95531 1.01091 1.21583 0.90666 0.84990 1.03949 1.43359 1.54795 1.11834 1.04728 1.19318 1.31766 1.00753 0.95074 0.89729 1.25399 0.94648 0.95577 0.99395 1.69684 1.33377 1.10647 1.35870 0.86437 0.79151 0.79852 0.81838 1.18474 1.20805 1.19783 1.20966 0.81288 0.89266 0.84607 1.90552 1.56163 1.69850 1.31385 1.20488 0.92575 0.93823 0.84708 0.86095 1.86519 1.70094 1.60474 1.17849 1.19981 0.94645 0.98014 0.94408 1.21081 0.96696 0.95410 0.94556 1.21028 0.92381 1.00854 0.99160 1.20889 0.99773 1.00678 0.91895 1.20644 0.88418 1.05485 0.91792 1.98329 1.49450 1.93539 1.64535 1.20637 0.90477 1.00454 1.00309 0.93113 0.93069 0.93434 0.92206 0.92475 0.93160 0.92440 0.86639 0.93341 0.91801 0.77539 0.85059 0.85624 0.85754 0.85751 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.08 9.91 37.16 0.37 -1.71 16 2 C -0.12 -1.98 5.93 -26.73 -0.16 -2.13 16 3 C -0.13 -2.56 5.49 -26.73 -0.15 -2.70 16 4 C 0.11 2.57 4.88 -4.04 -0.02 2.55 16 5 N -0.43 -10.12 2.52 -114.82 -0.29 -10.41 16 6 C -0.34 -7.75 6.08 -14.93 -0.09 -7.84 16 7 H 0.09 1.79 5.58 -52.49 -0.29 1.50 16 8 C 0.06 1.31 5.24 -17.47 -0.09 1.21 16 9 N -0.86 -21.36 10.96 55.50 0.61 -20.76 16 10 Si 0.90 17.69 28.92 -169.99 -4.92 12.78 16 11 H -0.26 -4.65 6.32 56.52 0.36 -4.30 16 12 H -0.28 -5.76 7.11 56.52 0.40 -5.36 16 13 H -0.27 -5.34 7.11 56.52 0.40 -4.94 16 14 C 0.45 10.53 6.97 -10.98 -0.08 10.45 16 15 O -0.59 -15.28 15.96 -14.25 -0.23 -15.51 16 16 C 0.15 2.88 2.96 -29.04 -0.09 2.79 16 17 H 0.12 2.24 7.33 -51.93 -0.38 1.86 16 18 O -0.54 -10.27 12.89 -55.03 -0.71 -10.97 16 19 C -0.07 -1.29 4.42 -104.63 -0.46 -1.75 16 20 C -0.06 -1.04 7.26 -39.58 -0.29 -1.33 16 21 C -0.12 -1.87 9.71 -39.59 -0.38 -2.26 16 22 C -0.11 -1.80 9.83 -39.55 -0.39 -2.19 16 23 C -0.04 -0.62 6.32 -39.49 -0.25 -0.87 16 24 Cl -0.09 -1.32 28.96 -51.86 -1.50 -2.82 16 25 C -0.10 -1.80 9.07 -39.54 -0.36 -2.16 16 26 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 28 H 0.05 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 30 H 0.06 0.95 8.14 -51.93 -0.42 0.53 16 31 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 32 H 0.06 1.15 8.14 -51.93 -0.42 0.73 16 33 H 0.12 2.83 5.43 -51.93 -0.28 2.55 16 34 H 0.05 1.20 7.54 -51.93 -0.39 0.81 16 35 H 0.27 6.50 8.31 -40.82 -0.34 6.16 16 36 H 0.38 6.40 7.29 45.56 0.33 6.73 16 37 H 0.13 2.18 6.26 -52.48 -0.33 1.85 16 38 H 0.13 1.78 7.63 -52.49 -0.40 1.38 16 39 H 0.12 1.67 8.06 -52.49 -0.42 1.25 16 40 H 0.12 2.14 6.88 -52.49 -0.36 1.78 16 LS Contribution 342.11 15.07 5.16 5.16 Total: -1.00 -27.08 342.11 -8.98 -36.06 By element: Atomic # 1 Polarization: 19.08 SS G_CDS: -4.67 Total: 14.42 kcal Atomic # 6 Polarization: -5.51 SS G_CDS: -2.43 Total: -7.94 kcal Atomic # 7 Polarization: -31.48 SS G_CDS: 0.32 Total: -31.17 kcal Atomic # 8 Polarization: -25.55 SS G_CDS: -0.94 Total: -26.48 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -4.92 Total: 12.78 kcal Atomic # 17 Polarization: -1.32 SS G_CDS: -1.50 Total: -2.82 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -27.08 -8.98 -36.06 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144823268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -41.330 kcal (2) G-P(sol) polarization free energy of solvation -27.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.980 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.063 kcal (6) G-S(sol) free energy of system = (1) + (5) -77.393 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds