Wall clock time and date at job start Tue Mar 31 2020 10:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 C 1.53003 * 109.47490 * 2 1 4 4 C 1.52996 * 109.47490 * 179.97438 * 3 2 1 5 5 N 1.46498 * 109.47440 * 179.97438 * 4 3 2 6 6 C 1.37098 * 119.99998 * 264.05547 * 5 4 3 7 7 H 1.07993 * 119.99956 * 134.65691 * 6 5 4 8 8 C 1.38945 * 119.99643 * 314.65587 * 6 5 4 9 9 N 1.31414 * 120.00379 * 359.53291 * 8 6 5 10 10 Si 1.86809 * 119.99824 * 179.53034 * 8 6 5 11 11 H 1.48500 * 109.46997 * 60.00046 * 10 8 6 12 12 H 1.48503 * 109.46974 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47112 * 300.00047 * 10 8 6 14 14 C 1.34782 * 120.00199 * 84.05187 * 5 4 3 15 15 O 1.21297 * 119.99653 * 4.86905 * 14 5 4 16 16 C 1.50696 * 119.99938 * 184.87120 * 14 5 4 17 17 H 1.08997 * 109.46843 * 52.48137 * 16 14 5 18 18 O 1.42907 * 109.46632 * 172.47590 * 16 14 5 19 19 C 1.50699 * 109.47158 * 292.47747 * 16 14 5 20 20 C 1.38257 * 119.99483 * 102.58984 * 19 16 14 21 21 C 1.38218 * 120.03124 * 179.97438 * 20 19 16 22 22 C 1.38240 * 120.00952 * 359.97438 * 21 20 19 23 23 C 1.38332 * 119.98854 * 359.97438 * 22 21 20 24 24 Cl 1.73592 * 120.01562 * 180.02562 * 23 22 21 25 25 C 1.38194 * 119.99026 * 282.31060 * 19 16 14 26 26 H 1.08995 * 109.47024 * 300.00635 * 1 2 3 27 27 H 1.09007 * 109.46957 * 60.00021 * 1 2 3 28 28 H 1.08991 * 109.47202 * 179.97438 * 1 2 3 29 29 H 1.08998 * 109.47411 * 239.99704 * 2 1 3 30 30 H 1.09004 * 109.47445 * 119.99826 * 2 1 3 31 31 H 1.08998 * 109.47035 * 59.99474 * 3 2 1 32 32 H 1.09001 * 109.46781 * 299.99576 * 3 2 1 33 33 H 1.08998 * 109.47411 * 59.99704 * 4 3 2 34 34 H 1.09007 * 109.46957 * 299.99979 * 4 3 2 35 35 H 0.96999 * 119.99838 * 180.02562 * 9 8 6 36 36 H 0.96699 * 113.99786 * 60.00359 * 18 16 14 37 37 H 1.08004 * 119.98595 * 359.97438 * 20 19 16 38 38 H 1.07996 * 119.99977 * 179.97438 * 21 20 19 39 39 H 1.07995 * 120.00667 * 180.02562 * 22 21 20 40 40 H 1.07998 * 120.01248 * 0.02562 * 25 19 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 3.5700 1.4425 0.0006 5 7 4.0584 2.8237 0.0000 6 6 4.4034 3.4282 -1.1811 7 1 4.0730 4.4352 -1.3889 8 6 5.1781 2.7454 -2.1107 9 7 5.5878 1.5235 -1.8538 10 14 5.6371 3.5643 -3.7257 11 1 6.4129 4.8004 -3.4510 12 1 6.4610 2.6322 -4.5367 13 1 4.4019 3.9110 -4.4736 14 6 4.1686 3.5001 1.1606 15 8 3.9482 2.9386 2.2130 16 6 4.5655 4.9538 1.1507 17 1 3.9124 5.5041 0.4735 18 8 4.4440 5.4896 2.4699 19 6 5.9934 5.0815 0.6861 20 6 6.2658 5.4923 -0.6056 21 6 7.5751 5.6102 -1.0324 22 6 8.6132 5.3179 -0.1675 23 6 8.3413 4.9079 1.1254 24 17 9.6443 4.5414 2.2122 25 6 7.0303 4.7936 1.5531 26 1 -0.3633 0.5139 0.8899 27 1 -0.3633 0.5139 -0.8900 28 1 -0.3633 -1.0276 -0.0005 29 1 1.8933 -0.5139 -0.8899 30 1 1.8934 -0.5138 0.8900 31 1 1.6767 1.9563 0.8899 32 1 1.6768 1.9563 -0.8900 33 1 3.9338 0.9285 -0.8890 34 1 3.9330 0.9288 0.8909 35 1 6.1290 1.0470 -2.5027 36 1 4.9985 5.0469 3.1269 37 1 5.4551 5.7211 -1.2816 38 1 7.7873 5.9307 -2.0416 39 1 9.6362 5.4105 -0.5009 40 1 6.8175 4.4767 2.5634 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001144823268.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:36:29 Heat of formation + Delta-G solvation = -91.118124 kcal Electronic energy + Delta-G solvation = -24512.211193 eV Core-core repulsion = 20930.841881 eV Total energy + Delta-G solvation = -3581.369312 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -41.33354 -39.75317 -37.89224 -37.36923 -36.60483 -35.59573 -33.44232 -32.50500 -31.69590 -30.09824 -27.87298 -26.67653 -24.35975 -23.56570 -22.80192 -21.93565 -21.10793 -19.43126 -18.68453 -17.97600 -17.10134 -16.63111 -16.47966 -16.21846 -16.10949 -15.70443 -15.56727 -14.86554 -14.78008 -14.58180 -14.37758 -14.14369 -13.76025 -13.59698 -13.22008 -13.03041 -12.94102 -12.83750 -12.65181 -12.35083 -12.28537 -12.16162 -12.07721 -12.01733 -11.89844 -11.79177 -11.54004 -11.41853 -10.85212 -10.42412 -9.75743 -9.55019 -9.29209 -8.18104 -6.10932 0.28890 0.34584 1.15977 1.47070 1.52516 1.58765 1.92399 2.33875 2.69335 2.89642 3.13737 3.51859 3.69240 3.89930 4.05464 4.11310 4.11882 4.29443 4.30454 4.36910 4.46021 4.57584 4.59198 4.83361 4.85445 4.89791 4.93297 5.00314 5.07699 5.19711 5.26205 5.36067 5.40166 5.43826 5.48881 5.60909 5.65859 5.90670 6.11751 6.42153 6.51567 7.14429 7.53420 7.99009 8.80600 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.012938 B = 0.005707 C = 0.004642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2163.583343 B = 4905.083617 C = 6030.564424 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.115 4.115 3 C -0.115 4.115 4 C 0.113 3.887 5 N -0.437 5.437 6 C -0.345 4.345 7 H 0.102 0.898 8 C 0.020 3.980 9 N -0.897 5.897 10 Si 0.953 3.047 11 H -0.226 1.226 12 H -0.296 1.296 13 H -0.269 1.269 14 C 0.438 3.562 15 O -0.630 6.630 16 C 0.157 3.843 17 H 0.133 0.867 18 O -0.547 6.547 19 C -0.086 4.086 20 C -0.069 4.069 21 C -0.116 4.116 22 C -0.111 4.111 23 C -0.047 4.047 24 Cl -0.075 7.075 25 C -0.115 4.115 26 H 0.050 0.950 27 H 0.057 0.943 28 H 0.070 0.930 29 H 0.062 0.938 30 H 0.053 0.947 31 H 0.034 0.966 32 H 0.057 0.943 33 H 0.103 0.897 34 H 0.020 0.980 35 H 0.268 0.732 36 H 0.382 0.618 37 H 0.141 0.859 38 H 0.154 0.846 39 H 0.152 0.848 40 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.188 5.916 -1.933 6.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.153 4.153 3 C -0.154 4.154 4 C -0.011 4.011 5 N -0.155 5.155 6 C -0.472 4.472 7 H 0.120 0.880 8 C -0.183 4.183 9 N -0.534 5.534 10 Si 0.776 3.224 11 H -0.149 1.149 12 H -0.222 1.222 13 H -0.194 1.194 14 C 0.227 3.773 15 O -0.518 6.518 16 C 0.094 3.906 17 H 0.150 0.850 18 O -0.353 6.353 19 C -0.087 4.087 20 C -0.087 4.087 21 C -0.134 4.134 22 C -0.129 4.129 23 C -0.074 4.074 24 Cl -0.046 7.046 25 C -0.134 4.134 26 H 0.069 0.931 27 H 0.076 0.924 28 H 0.089 0.911 29 H 0.080 0.920 30 H 0.072 0.928 31 H 0.053 0.947 32 H 0.075 0.925 33 H 0.121 0.879 34 H 0.038 0.962 35 H 0.078 0.922 36 H 0.232 0.768 37 H 0.158 0.842 38 H 0.171 0.829 39 H 0.169 0.831 40 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges 1.890 5.844 -1.719 6.378 hybrid contribution 0.741 -0.752 -0.181 1.071 sum 2.632 5.093 -1.900 6.039 Atomic orbital electron populations 1.21708 0.94154 1.02314 1.01771 1.21395 0.97078 0.95289 1.01565 1.21784 0.95737 0.97680 1.00151 1.21511 0.92724 0.85070 1.01761 1.43615 1.54600 1.11833 1.05421 1.19686 1.31610 1.01333 0.94575 0.88039 1.26132 0.94237 0.95709 1.02237 1.69835 1.34378 1.12224 1.36953 0.85629 0.79140 0.79952 0.77697 1.14926 1.22206 1.19431 1.21678 0.80781 0.90913 0.83970 1.90513 1.57695 1.71130 1.32458 1.20385 0.93798 0.91149 0.85220 0.84962 1.86487 1.70460 1.60332 1.17975 1.19927 0.93824 0.99595 0.95346 1.21267 0.97853 0.95438 0.94102 1.21370 0.91678 0.99925 1.00390 1.21257 1.01238 0.99226 0.91209 1.20810 0.88387 1.05482 0.92684 1.98331 1.48578 1.93454 1.64270 1.20737 0.91258 1.01044 1.00377 0.93101 0.92429 0.91149 0.91954 0.92847 0.94691 0.92453 0.87913 0.96174 0.92187 0.76817 0.84165 0.82880 0.83063 0.86123 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.78 9.91 71.98 0.71 -3.06 16 2 C -0.12 -3.83 5.93 30.59 0.18 -3.65 16 3 C -0.11 -4.67 5.49 30.59 0.17 -4.50 16 4 C 0.11 5.41 4.88 86.38 0.42 5.83 16 5 N -0.44 -20.97 2.52 -635.55 -1.60 -22.57 16 6 C -0.34 -15.44 6.08 84.04 0.51 -14.93 16 7 H 0.10 4.12 5.58 -2.91 -0.02 4.11 16 8 C 0.02 0.90 5.24 84.92 0.44 1.35 16 9 N -0.90 -44.96 10.96 21.66 0.24 -44.72 16 10 Si 0.95 34.40 28.92 68.60 1.98 36.38 16 11 H -0.23 -6.89 6.32 99.48 0.63 -6.26 16 12 H -0.30 -11.31 7.11 99.48 0.71 -10.61 16 13 H -0.27 -9.57 7.11 99.48 0.71 -8.86 16 14 C 0.44 20.84 6.97 87.65 0.61 21.46 16 15 O -0.63 -33.59 15.96 15.84 0.25 -33.34 16 16 C 0.16 6.13 2.96 29.10 0.09 6.22 16 17 H 0.13 4.78 7.33 -2.39 -0.02 4.77 16 18 O -0.55 -20.68 12.89 -130.05 -1.68 -22.35 16 19 C -0.09 -3.12 4.42 -19.87 -0.09 -3.21 16 20 C -0.07 -2.24 7.26 22.27 0.16 -2.08 16 21 C -0.12 -3.34 9.71 22.27 0.22 -3.12 16 22 C -0.11 -3.19 9.83 22.29 0.22 -2.97 16 23 C -0.05 -1.52 6.32 22.33 0.14 -1.38 16 24 Cl -0.08 -2.17 28.96 -2.72 -0.08 -2.25 16 25 C -0.12 -4.11 9.07 22.29 0.20 -3.90 16 26 H 0.05 1.34 8.14 -2.39 -0.02 1.32 16 27 H 0.06 1.45 8.14 -2.38 -0.02 1.43 16 28 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 29 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 30 H 0.05 1.80 8.14 -2.38 -0.02 1.78 16 31 H 0.03 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.06 2.30 8.14 -2.39 -0.02 2.28 16 33 H 0.10 5.22 5.43 -2.39 -0.01 5.20 16 34 H 0.02 1.04 7.54 -2.38 -0.02 1.02 16 35 H 0.27 13.00 8.31 -92.71 -0.77 12.23 16 36 H 0.38 13.29 7.29 -74.06 -0.54 12.75 16 37 H 0.14 4.24 6.26 -2.91 -0.02 4.22 16 38 H 0.15 3.55 7.63 -2.91 -0.02 3.53 16 39 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 40 H 0.12 4.24 6.88 -2.91 -0.02 4.22 16 Total: -1.00 -58.71 342.11 3.55 -55.16 By element: Atomic # 1 Polarization: 41.19 SS G_CDS: 0.45 Total: 41.64 kcal Atomic # 6 Polarization: -11.95 SS G_CDS: 3.99 Total: -7.96 kcal Atomic # 7 Polarization: -65.92 SS G_CDS: -1.37 Total: -67.29 kcal Atomic # 8 Polarization: -54.27 SS G_CDS: -1.42 Total: -55.69 kcal Atomic # 14 Polarization: 34.40 SS G_CDS: 1.98 Total: 36.38 kcal Atomic # 17 Polarization: -2.17 SS G_CDS: -0.08 Total: -2.25 kcal Total: -58.71 3.55 -55.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001144823268.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -35.958 kcal (2) G-P(sol) polarization free energy of solvation -58.713 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.672 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.553 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds