Wall clock time and date at job start Tue Mar 31 2020 10:14:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46987 * 2 1 4 4 C 1.52998 * 109.47164 * 240.00077 * 2 1 3 5 5 C 1.50702 * 109.47025 * 59.99720 * 4 2 1 6 6 H 1.08000 * 120.00373 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99954 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00142 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47308 * 89.99937 * 9 7 5 11 11 H 1.48500 * 109.47027 * 209.99746 * 9 7 5 12 12 H 1.48496 * 109.47152 * 329.99754 * 9 7 5 13 13 C 1.53002 * 109.47586 * 119.99948 * 2 1 3 14 14 N 1.46498 * 109.47002 * 300.00083 * 13 2 1 15 15 C 1.34779 * 119.99980 * 179.97438 * 14 13 2 16 16 O 1.21557 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.47798 * 119.99975 * 180.02562 * 15 14 13 18 18 C 1.39626 * 120.10653 * 359.97438 * 17 15 14 19 19 C 1.37927 * 119.97154 * 179.97438 * 18 17 15 20 20 C 1.38408 * 120.19502 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 119.89317 * 179.97438 * 20 19 18 22 22 C 1.38955 * 120.21867 * 0.02562 * 20 19 18 23 23 O 1.35926 * 119.98952 * 179.69730 * 22 20 19 24 24 C 1.38404 * 120.01880 * 359.97438 * 22 20 19 25 25 H 1.09008 * 109.47323 * 299.99727 * 1 2 3 26 26 H 1.08993 * 109.47758 * 59.99848 * 1 2 3 27 27 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47277 * 300.00031 * 3 2 1 30 30 H 1.08994 * 109.47230 * 60.00437 * 3 2 1 31 31 H 1.09003 * 109.47379 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47063 * 300.00196 * 4 2 1 33 33 H 0.96996 * 120.00231 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47305 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46654 * 59.99796 * 13 2 1 36 36 H 0.97005 * 120.00429 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.01349 * 359.96182 * 18 17 15 38 38 H 1.08005 * 119.89869 * 180.02562 * 19 18 17 39 39 H 0.96697 * 114.00137 * 90.00769 * 23 22 20 40 40 H 1.08000 * 120.09803 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 1.4322 0.1381 -4.8058 9 14 2.9430 -2.0017 -3.9034 10 1 2.0836 -3.2119 -3.9487 11 1 3.7348 -1.9098 -5.1563 12 1 3.8634 -2.0914 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8770 -0.4914 3.6695 16 8 2.5759 -1.4796 3.7810 17 6 1.3839 0.2050 4.8763 18 6 0.5814 1.3407 4.7508 19 6 0.1224 1.9881 5.8788 20 6 0.4552 1.5158 7.1365 21 17 -0.1264 2.3371 8.5510 22 6 1.2542 0.3869 7.2707 23 8 1.5833 -0.0694 8.5081 24 6 1.7198 -0.2697 6.1448 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 1.6659 -0.1937 -5.6868 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7583 2.3565 37 1 0.3205 1.7122 3.7708 38 1 -0.4987 2.8663 5.7804 39 1 0.9573 -0.7116 8.8698 40 1 2.3412 -1.1470 6.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001160651921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:07 Heat of formation + Delta-G solvation = -74.121260 kcal Electronic energy + Delta-G solvation = -22885.713079 eV Core-core repulsion = 19305.080805 eV Total energy + Delta-G solvation = -3580.632273 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.67260 -39.36114 -37.41109 -37.07600 -36.70033 -33.84786 -32.21497 -31.39808 -30.27418 -27.88743 -26.62918 -26.51857 -24.12716 -23.18878 -22.32571 -20.66440 -19.32464 -18.13182 -17.35432 -16.96712 -16.88921 -16.38257 -15.58007 -15.43202 -15.22284 -14.36713 -14.27130 -13.90904 -13.79555 -13.54448 -13.37460 -13.12268 -12.79223 -12.45271 -12.37611 -12.27292 -11.78738 -11.69370 -11.30266 -11.19230 -11.07895 -11.04630 -10.66868 -10.55592 -10.15668 -10.03303 -9.78563 -9.54676 -9.43283 -9.17679 -9.04323 -8.89881 -8.56796 -6.07523 -4.05138 0.22137 0.68802 1.62222 2.46814 3.07744 3.29136 3.37258 3.37575 3.41085 3.64693 4.26013 4.42697 4.48452 4.57602 4.78796 4.94126 5.24672 5.28497 5.33542 5.45310 5.55150 5.58161 5.60886 5.75836 6.02214 6.02483 6.05237 6.12044 6.23415 6.36052 6.53053 6.58654 6.82525 6.95835 6.99155 7.09331 7.14663 7.31366 7.48614 7.74839 8.14555 8.48911 8.96145 9.55041 11.05140 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002532 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.131935 B =11055.488748 C =11696.723411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 C -0.063 4.063 3 C -0.130 4.130 4 C -0.002 4.002 5 C -0.512 4.512 6 H 0.078 0.922 7 C 0.067 3.933 8 N -0.903 5.903 9 Si 0.875 3.125 10 H -0.278 1.278 11 H -0.289 1.289 12 H -0.265 1.265 13 C 0.124 3.876 14 N -0.712 5.712 15 C 0.551 3.449 16 O -0.537 6.537 17 C -0.107 4.107 18 C -0.084 4.084 19 C -0.102 4.102 20 C -0.045 4.045 21 Cl -0.053 7.053 22 C 0.109 3.891 23 O -0.484 6.484 24 C -0.076 4.076 25 H 0.030 0.970 26 H 0.074 0.926 27 H 0.048 0.952 28 H 0.048 0.952 29 H 0.074 0.926 30 H 0.030 0.970 31 H 0.019 0.981 32 H 0.014 0.986 33 H 0.263 0.737 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.399 0.601 37 H 0.141 0.859 38 H 0.145 0.855 39 H 0.394 0.606 40 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.367 3.305 24.839 25.435 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C -0.064 4.064 3 C -0.187 4.187 4 C -0.040 4.040 5 C -0.550 4.550 6 H 0.096 0.904 7 C -0.134 4.134 8 N -0.542 5.542 9 Si 0.702 3.298 10 H -0.204 1.204 11 H -0.215 1.215 12 H -0.190 1.190 13 C 0.002 3.998 14 N -0.364 5.364 15 C 0.337 3.663 16 O -0.415 6.415 17 C -0.110 4.110 18 C -0.103 4.103 19 C -0.120 4.120 20 C -0.073 4.073 21 Cl -0.024 7.024 22 C 0.063 3.937 23 O -0.294 6.294 24 C -0.095 4.095 25 H 0.049 0.951 26 H 0.093 0.907 27 H 0.067 0.933 28 H 0.067 0.933 29 H 0.093 0.907 30 H 0.049 0.951 31 H 0.037 0.963 32 H 0.033 0.967 33 H 0.072 0.928 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.236 0.764 37 H 0.158 0.842 38 H 0.163 0.837 39 H 0.251 0.749 40 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -3.424 3.031 24.754 25.173 hybrid contribution -0.165 -0.651 -0.119 0.682 sum -3.589 2.380 24.635 25.009 Atomic orbital electron populations 1.21788 0.94736 1.01366 1.00786 1.20707 0.95862 0.95956 0.93861 1.21787 1.00591 0.95518 1.00785 1.19595 0.96351 0.95518 0.92538 1.21064 1.31936 1.13368 0.88589 0.90379 1.25000 0.95683 0.96759 0.95989 1.69897 1.45893 1.40534 0.97905 0.86858 0.81321 0.83894 0.77692 1.20372 1.21494 1.18980 1.21724 0.99152 0.96139 0.82805 1.46102 1.52786 1.31847 1.05624 1.18105 0.80760 0.84217 0.83227 1.90790 1.37919 1.26017 1.86763 1.20049 1.00170 0.96911 0.93908 1.21360 0.95805 0.93938 0.99150 1.20953 1.00571 1.00822 0.89682 1.21652 0.99705 0.96528 0.89379 1.98388 1.87089 1.77621 1.39324 1.18013 0.96580 0.93449 0.85638 1.84882 1.52359 1.63616 1.28531 1.21518 0.98296 0.99902 0.89798 0.95124 0.90730 0.93295 0.93273 0.90732 0.95108 0.96291 0.96744 0.92761 0.91451 0.91465 0.76365 0.84164 0.83695 0.74900 0.82993 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.10 8.05 37.15 0.30 -1.80 16 2 C -0.06 -1.10 0.54 -154.51 -0.08 -1.18 16 3 C -0.13 -2.11 8.05 37.16 0.30 -1.82 16 4 C 0.00 -0.05 3.11 -27.88 -0.09 -0.14 16 5 C -0.51 -13.34 8.20 -34.44 -0.28 -13.62 16 6 H 0.08 2.15 5.92 -52.49 -0.31 1.84 16 7 C 0.07 1.86 5.47 -17.82 -0.10 1.76 16 8 N -0.90 -26.80 13.96 55.43 0.77 -26.03 16 9 Si 0.87 21.15 27.47 -169.99 -4.67 16.49 16 10 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 11 H -0.29 -7.01 7.11 56.52 0.40 -6.60 16 12 H -0.27 -6.20 6.54 56.52 0.37 -5.83 16 13 C 0.12 1.97 4.56 -4.04 -0.02 1.95 16 14 N -0.71 -9.26 4.91 -61.27 -0.30 -9.56 16 15 C 0.55 7.61 7.77 -12.35 -0.10 7.51 16 16 O -0.54 -9.34 16.34 5.32 0.09 -9.26 16 17 C -0.11 -1.16 5.87 -104.98 -0.62 -1.77 16 18 C -0.08 -0.70 9.54 -39.18 -0.37 -1.07 16 19 C -0.10 -0.78 9.80 -39.63 -0.39 -1.17 16 20 C -0.05 -0.39 6.34 -39.25 -0.25 -0.64 16 21 Cl -0.05 -0.43 28.49 -51.86 -1.48 -1.91 16 22 C 0.11 1.00 6.69 -39.25 -0.26 0.74 16 23 O -0.48 -3.89 12.95 -19.51 -0.25 -4.14 16 24 C -0.08 -0.78 9.53 -39.03 -0.37 -1.16 16 25 H 0.03 0.39 6.86 -51.92 -0.36 0.03 16 26 H 0.07 1.38 6.62 -51.93 -0.34 1.03 16 27 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 28 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 29 H 0.07 1.38 6.62 -51.93 -0.34 1.04 16 30 H 0.03 0.40 6.86 -51.93 -0.36 0.04 16 31 H 0.02 0.43 7.20 -51.93 -0.37 0.05 16 32 H 0.01 0.32 7.57 -51.93 -0.39 -0.07 16 33 H 0.26 7.37 8.31 -40.82 -0.34 7.04 16 34 H 0.07 1.12 8.14 -51.93 -0.42 0.70 16 35 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 36 H 0.40 4.25 4.19 -40.82 -0.17 4.08 16 37 H 0.14 0.90 6.40 -52.49 -0.34 0.56 16 38 H 0.15 0.80 8.06 -52.48 -0.42 0.38 16 39 H 0.39 1.38 9.06 45.56 0.41 1.79 16 40 H 0.15 1.62 7.65 -52.49 -0.40 1.22 16 LS Contribution 342.27 15.07 5.16 5.16 Total: -1.00 -31.90 342.27 -7.26 -39.16 By element: Atomic # 1 Polarization: 6.74 SS G_CDS: -4.25 Total: 2.49 kcal Atomic # 6 Polarization: -10.08 SS G_CDS: -2.33 Total: -12.40 kcal Atomic # 7 Polarization: -36.06 SS G_CDS: 0.47 Total: -35.58 kcal Atomic # 8 Polarization: -13.23 SS G_CDS: -0.17 Total: -13.39 kcal Atomic # 14 Polarization: 21.15 SS G_CDS: -4.67 Total: 16.49 kcal Atomic # 17 Polarization: -0.43 SS G_CDS: -1.48 Total: -1.91 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -31.90 -7.26 -39.16 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160651921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.958 kcal (2) G-P(sol) polarization free energy of solvation -31.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -66.859 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.163 kcal (6) G-S(sol) free energy of system = (1) + (5) -74.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds