Wall clock time and date at job start Tue Mar 31 2020 10:14:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.53005 * 109.46987 * 2 1 4 4 C 1.52998 * 109.47164 * 240.00077 * 2 1 3 5 5 C 1.50702 * 109.47025 * 59.99720 * 4 2 1 6 6 H 1.08000 * 120.00373 * 0.02562 * 5 4 2 7 7 C 1.37878 * 119.99908 * 180.02562 * 5 4 2 8 8 N 1.31516 * 119.99954 * 180.02562 * 7 5 4 9 9 Si 1.86796 * 120.00142 * 0.02562 * 7 5 4 10 10 H 1.48500 * 109.47308 * 89.99937 * 9 7 5 11 11 H 1.48500 * 109.47027 * 209.99746 * 9 7 5 12 12 H 1.48496 * 109.47152 * 329.99754 * 9 7 5 13 13 C 1.53002 * 109.47586 * 119.99948 * 2 1 3 14 14 N 1.46498 * 109.47002 * 300.00083 * 13 2 1 15 15 C 1.34779 * 119.99980 * 179.97438 * 14 13 2 16 16 O 1.21557 * 119.99939 * 0.02562 * 15 14 13 17 17 C 1.47798 * 119.99975 * 180.02562 * 15 14 13 18 18 C 1.39626 * 120.10653 * 359.97438 * 17 15 14 19 19 C 1.37927 * 119.97154 * 179.97438 * 18 17 15 20 20 C 1.38408 * 120.19502 * 0.02562 * 19 18 17 21 21 Cl 1.73596 * 119.89317 * 179.97438 * 20 19 18 22 22 C 1.38955 * 120.21867 * 0.02562 * 20 19 18 23 23 O 1.35926 * 119.98952 * 179.69730 * 22 20 19 24 24 C 1.38404 * 120.01880 * 359.97438 * 22 20 19 25 25 H 1.09008 * 109.47323 * 299.99727 * 1 2 3 26 26 H 1.08993 * 109.47758 * 59.99848 * 1 2 3 27 27 H 1.08997 * 109.47324 * 180.02562 * 1 2 3 28 28 H 1.09003 * 109.47209 * 180.02562 * 3 2 1 29 29 H 1.09000 * 109.47277 * 300.00031 * 3 2 1 30 30 H 1.08994 * 109.47230 * 60.00437 * 3 2 1 31 31 H 1.09003 * 109.47379 * 179.97438 * 4 2 1 32 32 H 1.08998 * 109.47063 * 300.00196 * 4 2 1 33 33 H 0.96996 * 120.00231 * 180.02562 * 8 7 5 34 34 H 1.08995 * 109.47305 * 179.97438 * 13 2 1 35 35 H 1.08998 * 109.46654 * 59.99796 * 13 2 1 36 36 H 0.97005 * 120.00429 * 359.97438 * 14 13 2 37 37 H 1.07998 * 120.01349 * 359.96182 * 18 17 15 38 38 H 1.08005 * 119.89869 * 180.02562 * 19 18 17 39 39 H 0.96697 * 114.00137 * 90.00769 * 23 22 20 40 40 H 1.08000 * 120.09803 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0399 -0.7212 -1.2492 5 6 1.5375 -0.0108 -2.4797 6 1 0.9169 0.8675 -2.3806 7 6 1.8702 -0.4822 -3.7320 8 7 1.4322 0.1381 -4.8058 9 14 2.9430 -2.0017 -3.9034 10 1 2.0836 -3.2119 -3.9487 11 1 3.7348 -1.9098 -5.1563 12 1 3.8634 -2.0914 -2.7416 13 6 2.0401 -0.7212 1.2492 14 7 1.5518 -0.0306 2.4454 15 6 1.8770 -0.4914 3.6695 16 8 2.5759 -1.4796 3.7810 17 6 1.3839 0.2050 4.8763 18 6 0.5814 1.3407 4.7508 19 6 0.1224 1.9881 5.8788 20 6 0.4552 1.5158 7.1365 21 17 -0.1264 2.3371 8.5510 22 6 1.2542 0.3869 7.2707 23 8 1.5833 -0.0694 8.5081 24 6 1.7198 -0.2697 6.1448 25 1 -0.3634 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0276 0.0005 28 1 3.1300 1.4426 -0.0005 29 1 1.6766 1.9564 -0.8900 30 1 1.6767 1.9564 0.8900 31 1 3.1300 -0.7208 -1.2495 32 1 1.6766 -1.7489 -1.2493 33 1 1.6659 -0.1937 -5.6868 34 1 3.1300 -0.7216 1.2490 35 1 1.6767 -1.7489 1.2492 36 1 0.9943 0.7583 2.3565 37 1 0.3205 1.7122 3.7708 38 1 -0.4987 2.8663 5.7804 39 1 0.9573 -0.7116 8.8698 40 1 2.3412 -1.1470 6.2476 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001160651921.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:14:06 Heat of formation + Delta-G solvation = -95.848357 kcal Electronic energy + Delta-G solvation = -22886.655236 eV Core-core repulsion = 19305.080805 eV Total energy + Delta-G solvation = -3581.574431 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.54605 -40.28666 -38.71826 -37.73829 -37.42561 -35.29308 -34.05193 -32.15786 -31.03140 -29.68248 -27.96791 -27.72639 -25.24735 -24.03311 -23.72728 -21.67780 -20.31299 -19.35934 -18.88642 -18.06878 -17.76963 -17.31035 -16.52539 -16.51599 -16.22408 -16.02311 -15.28204 -15.24384 -14.96453 -14.92680 -14.23209 -14.16598 -14.07618 -13.85537 -13.78858 -13.01499 -12.93746 -12.83064 -12.62542 -12.47057 -12.33753 -12.28671 -12.15207 -11.77924 -11.72134 -11.50862 -11.35115 -11.02087 -10.88968 -10.69500 -10.22508 -10.05517 -9.75459 -8.21491 -6.21292 -0.52025 0.04218 0.97907 1.36331 1.39659 1.49018 1.60674 2.04738 2.39764 2.55423 3.01923 3.14259 3.58100 3.64239 3.89645 3.95818 4.06568 4.11637 4.16792 4.32773 4.64226 4.71289 4.71585 4.77013 4.90592 4.95314 4.96236 5.02945 5.07340 5.11636 5.29202 5.33672 5.41277 5.43105 5.46720 5.57432 5.71452 5.77993 6.38758 6.47269 6.64584 6.85922 7.11315 7.41540 8.94002 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.033320 B = 0.002532 C = 0.002393 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 840.131935 B =11055.488748 C =11696.723411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.058 4.058 3 C -0.126 4.126 4 C -0.005 4.005 5 C -0.500 4.500 6 H 0.054 0.946 7 C 0.005 3.995 8 N -0.951 5.951 9 Si 0.932 3.068 10 H -0.272 1.272 11 H -0.290 1.290 12 H -0.252 1.252 13 C 0.137 3.863 14 N -0.701 5.701 15 C 0.553 3.447 16 O -0.579 6.579 17 C -0.120 4.120 18 C -0.075 4.075 19 C -0.094 4.094 20 C -0.049 4.049 21 Cl -0.048 7.048 22 C 0.110 3.890 23 O -0.493 6.493 24 C -0.087 4.087 25 H 0.071 0.929 26 H 0.046 0.954 27 H 0.045 0.955 28 H 0.044 0.956 29 H 0.046 0.954 30 H 0.071 0.929 31 H 0.014 0.986 32 H 0.014 0.986 33 H 0.262 0.738 34 H 0.058 0.942 35 H 0.060 0.940 36 H 0.413 0.587 37 H 0.165 0.835 38 H 0.173 0.827 39 H 0.413 0.587 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.934 3.903 27.126 27.847 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.058 4.058 3 C -0.183 4.183 4 C -0.043 4.043 5 C -0.538 4.538 6 H 0.072 0.928 7 C -0.191 4.191 8 N -0.593 5.593 9 Si 0.758 3.242 10 H -0.198 1.198 11 H -0.216 1.216 12 H -0.175 1.175 13 C 0.013 3.987 14 N -0.353 5.353 15 C 0.341 3.659 16 O -0.460 6.460 17 C -0.124 4.124 18 C -0.093 4.093 19 C -0.112 4.112 20 C -0.076 4.076 21 Cl -0.019 7.019 22 C 0.064 3.936 23 O -0.307 6.307 24 C -0.107 4.107 25 H 0.090 0.910 26 H 0.065 0.935 27 H 0.064 0.936 28 H 0.063 0.937 29 H 0.066 0.934 30 H 0.090 0.910 31 H 0.033 0.967 32 H 0.032 0.968 33 H 0.071 0.929 34 H 0.076 0.924 35 H 0.078 0.922 36 H 0.253 0.747 37 H 0.182 0.818 38 H 0.190 0.810 39 H 0.273 0.727 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -4.016 3.642 27.074 27.611 hybrid contribution -0.050 -0.766 -0.711 1.046 sum -4.066 2.875 26.363 26.829 Atomic orbital electron populations 1.21727 0.93706 1.01399 1.01456 1.20560 0.96636 0.96150 0.92493 1.21729 1.00310 0.94825 1.01450 1.19583 0.95989 0.95555 0.93176 1.21371 1.30156 1.12263 0.89997 0.92763 1.25819 0.97455 0.99839 0.95971 1.70035 1.48200 1.42641 0.98426 0.85923 0.79915 0.80512 0.77877 1.19769 1.21644 1.17536 1.21363 0.98527 0.95773 0.83060 1.45872 1.52761 1.32029 1.04651 1.18510 0.79824 0.83621 0.83945 1.90769 1.39902 1.28025 1.87350 1.19825 1.01913 0.98167 0.92468 1.21572 0.94521 0.92648 1.00591 1.21255 1.00003 1.01163 0.88826 1.21816 0.99414 0.96280 0.90114 1.98394 1.86919 1.77384 1.39173 1.17977 0.96428 0.93607 0.85591 1.84832 1.53459 1.64321 1.28059 1.21474 0.98832 1.00021 0.90359 0.91019 0.93468 0.93609 0.93728 0.93445 0.91037 0.96720 0.96796 0.92907 0.92397 0.92205 0.74731 0.81750 0.81007 0.72720 0.84217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.85 8.05 71.98 0.58 -3.28 16 2 C -0.06 -1.93 0.54 -52.18 -0.03 -1.95 16 3 C -0.13 -3.90 8.05 71.98 0.58 -3.32 16 4 C -0.01 -0.22 3.11 29.85 0.09 -0.13 16 5 C -0.50 -26.42 8.20 25.60 0.21 -26.21 16 6 H 0.05 3.08 5.92 -2.91 -0.02 3.06 16 7 C 0.01 0.30 5.47 84.65 0.46 0.76 16 8 N -0.95 -57.92 13.96 21.45 0.30 -57.62 16 9 Si 0.93 43.81 27.47 68.60 1.88 45.70 16 10 H -0.27 -12.46 7.11 99.48 0.71 -11.75 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 H -0.25 -11.14 6.54 99.48 0.65 -10.49 16 13 C 0.14 4.09 4.56 86.38 0.39 4.48 16 14 N -0.70 -16.41 4.91 -466.03 -2.29 -18.69 16 15 C 0.55 14.40 7.77 86.77 0.67 15.07 16 16 O -0.58 -19.98 16.34 -3.89 -0.06 -20.04 16 17 C -0.12 -2.36 5.87 -20.10 -0.12 -2.48 16 18 C -0.07 -0.97 9.54 22.53 0.21 -0.76 16 19 C -0.09 -1.09 9.80 22.24 0.22 -0.87 16 20 C -0.05 -0.71 6.34 22.48 0.14 -0.57 16 21 Cl -0.05 -0.65 28.49 -2.72 -0.08 -0.73 16 22 C 0.11 1.83 6.69 22.48 0.15 1.98 16 23 O -0.49 -7.17 12.95 -92.72 -1.20 -8.37 16 24 C -0.09 -1.72 9.53 22.63 0.22 -1.50 16 25 H 0.07 1.58 6.86 -2.38 -0.02 1.57 16 26 H 0.05 1.71 6.62 -2.39 -0.02 1.70 16 27 H 0.04 1.42 8.14 -2.39 -0.02 1.40 16 28 H 0.04 1.41 8.14 -2.39 -0.02 1.39 16 29 H 0.05 1.73 6.62 -2.39 -0.02 1.72 16 30 H 0.07 1.60 6.86 -2.39 -0.02 1.59 16 31 H 0.01 0.65 7.20 -2.39 -0.02 0.63 16 32 H 0.01 0.60 7.57 -2.39 -0.02 0.58 16 33 H 0.26 15.12 8.31 -92.71 -0.77 14.35 16 34 H 0.06 1.86 8.14 -2.39 -0.02 1.84 16 35 H 0.06 1.90 8.14 -2.39 -0.02 1.88 16 36 H 0.41 7.13 4.19 -92.70 -0.39 6.74 16 37 H 0.17 1.28 6.40 -2.91 -0.02 1.26 16 38 H 0.17 1.07 8.06 -2.91 -0.02 1.05 16 39 H 0.41 2.23 9.06 -74.06 -0.67 1.56 16 40 H 0.14 3.03 7.65 -2.91 -0.02 3.00 16 Total: -1.00 -70.70 342.27 2.32 -68.38 By element: Atomic # 1 Polarization: 10.19 SS G_CDS: -0.02 Total: 10.16 kcal Atomic # 6 Polarization: -22.56 SS G_CDS: 3.79 Total: -18.78 kcal Atomic # 7 Polarization: -74.33 SS G_CDS: -1.99 Total: -76.32 kcal Atomic # 8 Polarization: -27.15 SS G_CDS: -1.26 Total: -28.42 kcal Atomic # 14 Polarization: 43.81 SS G_CDS: 1.88 Total: 45.70 kcal Atomic # 17 Polarization: -0.65 SS G_CDS: -0.08 Total: -0.73 kcal Total: -70.70 2.32 -68.38 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001160651921.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.465 kcal (2) G-P(sol) polarization free energy of solvation -70.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.166 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.383 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.848 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds