Wall clock time and date at job start Tue Mar 31 2020 09:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31810 * 119.12062 * 2 1 4 4 C 1.32318 * 120.81629 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.10259 * 0.02562 * 4 3 2 6 6 C 1.38580 * 118.40285 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.44961 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47116 * 94.99961 * 7 6 5 9 9 S 1.65608 * 119.99784 * 165.00229 * 8 7 6 10 10 O 1.42097 * 104.27391 * 308.92560 * 9 8 7 11 11 O 1.42096 * 104.27529 * 181.07113 * 9 8 7 12 12 C 1.81395 * 104.45080 * 64.99773 * 9 8 7 13 13 C 1.53005 * 109.46896 * 173.81303 * 12 9 8 14 14 C 1.50696 * 115.55086 * 65.19495 * 13 12 9 15 15 H 1.07996 * 120.00176 * 264.78360 * 14 13 12 16 16 C 1.37880 * 119.99679 * 84.78351 * 14 13 12 17 17 N 1.31511 * 120.00207 * 352.22603 * 16 14 13 18 18 Si 1.86799 * 119.99704 * 172.22757 * 16 14 13 19 19 H 1.48501 * 109.47255 * 59.99743 * 18 16 14 20 20 H 1.48504 * 109.47179 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47176 * 300.00034 * 18 16 14 22 22 C 1.53004 * 117.49668 * 279.52225 * 13 12 9 23 23 C 1.53006 * 117.49573 * 210.86846 * 13 12 9 24 24 N 1.31780 * 119.12071 * 180.30144 * 2 1 3 25 25 H 1.08999 * 109.47315 * 89.99823 * 1 2 3 26 26 H 1.09000 * 109.46916 * 209.99948 * 1 2 3 27 27 H 1.09000 * 109.47394 * 329.99505 * 1 2 3 28 28 H 1.08001 * 120.44861 * 180.02562 * 4 3 2 29 29 H 1.08008 * 120.80035 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47584 * 334.99826 * 7 6 5 31 31 H 1.08996 * 109.47443 * 215.00119 * 7 6 5 32 32 H 0.96996 * 120.00407 * 344.99863 * 8 7 6 33 33 H 1.08997 * 109.47576 * 293.81182 * 12 9 8 34 34 H 1.09004 * 109.47208 * 53.81711 * 12 9 8 35 35 H 0.96997 * 119.99944 * 185.02413 * 17 16 14 36 36 H 1.09004 * 117.50060 * 0.02562 * 22 13 12 37 37 H 1.08995 * 117.49518 * 145.02265 * 22 13 12 38 38 H 1.08999 * 117.49430 * 214.97757 * 23 13 12 39 39 H 1.08997 * 117.50062 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 0.0000 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5115 -0.0021 8 7 4.3260 -2.9979 1.3737 9 16 4.7387 -4.5762 1.6585 10 8 3.8252 -5.3251 0.8686 11 8 4.7440 -4.6869 3.0752 12 6 6.4225 -4.7295 1.0017 13 6 6.9796 -6.1127 1.3442 14 6 6.2748 -7.2761 0.6956 15 1 5.4954 -7.8005 1.2285 16 6 6.6249 -7.6710 -0.5782 17 7 7.4619 -6.9438 -1.2854 18 14 5.9105 -9.2391 -1.2993 19 1 4.4304 -9.1305 -1.3515 20 1 6.4413 -9.4396 -2.6717 21 1 6.2922 -10.3943 -0.4479 22 6 7.5362 -6.3208 2.7541 23 6 8.4896 -6.2326 1.5598 24 7 2.1483 -1.1512 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.9906 2.1375 -0.0001 29 1 5.2609 -0.0001 -0.0016 30 1 5.1873 -2.3821 -0.4368 31 1 3.6327 -3.2349 -0.5915 32 1 4.1704 -2.3954 2.1178 33 1 6.4032 -4.6035 -0.0808 34 1 7.0569 -3.9622 1.4456 35 1 7.6519 -7.1812 -2.2065 36 1 7.5052 -5.4724 3.4378 37 1 7.3929 -7.2994 3.2123 38 1 8.9732 -7.1531 1.2329 39 1 9.0862 -5.3262 1.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364787320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:41 Heat of formation + Delta-G solvation = -1.501759 kcal Electronic energy + Delta-G solvation = -23524.634562 eV Core-core repulsion = 19981.487765 eV Total energy + Delta-G solvation = -3543.146798 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.30264 -36.78730 -36.37810 -35.94344 -35.09038 -33.69623 -32.87218 -32.06173 -28.80173 -28.21071 -26.98833 -25.47236 -23.60643 -22.26508 -21.24013 -19.79570 -18.75682 -17.90822 -17.34249 -16.69721 -16.32624 -15.74890 -15.39114 -15.18068 -15.13450 -14.71935 -14.29639 -14.03963 -13.78830 -13.32044 -13.19800 -12.95923 -12.74322 -12.56245 -11.98038 -11.84946 -11.53730 -11.31181 -11.19264 -11.10618 -11.05712 -10.91351 -10.83276 -10.61415 -10.48430 -10.15013 -9.78002 -9.67053 -9.43990 -9.34673 -8.98826 -8.57988 -8.12495 -6.16001 -4.26511 0.58553 0.76594 1.10082 3.29369 3.32390 3.34280 3.41373 3.62257 3.65406 3.82962 4.18942 4.36539 4.50927 4.70322 4.81449 4.96520 5.09370 5.12276 5.16877 5.19000 5.29305 5.32830 5.41971 5.60983 5.66285 5.71929 5.90228 5.96959 6.19229 6.22370 6.33618 6.57346 6.69880 6.80470 6.95112 7.10116 7.21952 7.36747 7.78840 7.89075 8.18093 8.79040 9.44974 10.91628 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003787 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.315441 B = 7391.256262 C = 7819.985704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.086 4.086 2 C 0.316 3.684 3 N -0.521 5.521 4 C 0.150 3.850 5 C -0.222 4.222 6 C 0.176 3.824 7 C 0.165 3.835 8 N -1.126 6.126 9 S 2.606 3.394 10 O -0.944 6.944 11 O -0.971 6.971 12 C -0.553 4.553 13 C 0.043 3.957 14 C -0.517 4.517 15 H 0.068 0.932 16 C 0.083 3.917 17 N -0.875 5.875 18 Si 0.890 3.110 19 H -0.269 1.269 20 H -0.286 1.286 21 H -0.274 1.274 22 C -0.208 4.208 23 C -0.140 4.140 24 N -0.502 5.502 25 H 0.086 0.914 26 H 0.088 0.912 27 H 0.085 0.915 28 H 0.170 0.830 29 H 0.153 0.847 30 H 0.088 0.912 31 H 0.105 0.895 32 H 0.409 0.591 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.264 0.736 36 H 0.075 0.925 37 H 0.086 0.914 38 H 0.086 0.914 39 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.000 16.067 0.845 16.848 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.049 3.951 3 N -0.237 5.237 4 C -0.016 4.016 5 C -0.244 4.244 6 C 0.028 3.972 7 C 0.038 3.962 8 N -0.882 5.882 9 S 2.704 3.296 10 O -0.933 6.933 11 O -0.961 6.961 12 C -0.687 4.687 13 C 0.041 3.959 14 C -0.554 4.554 15 H 0.086 0.914 16 C -0.122 4.122 17 N -0.511 5.511 18 Si 0.717 3.283 19 H -0.194 1.194 20 H -0.211 1.211 21 H -0.199 1.199 22 C -0.246 4.246 23 C -0.180 4.180 24 N -0.217 5.217 25 H 0.105 0.895 26 H 0.106 0.894 27 H 0.104 0.896 28 H 0.187 0.813 29 H 0.170 0.830 30 H 0.106 0.894 31 H 0.123 0.877 32 H 0.241 0.759 33 H 0.152 0.848 34 H 0.119 0.881 35 H 0.073 0.927 36 H 0.093 0.907 37 H 0.105 0.895 38 H 0.104 0.896 39 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -6.427 15.272 0.914 16.595 hybrid contribution 1.305 -0.042 -0.592 1.434 sum -5.122 15.230 0.321 16.072 Atomic orbital electron populations 1.20588 0.85571 1.04287 1.03995 1.23348 0.98342 0.83219 0.90225 1.68264 1.10250 1.30556 1.14585 1.23254 0.89655 0.98648 0.90044 1.22859 1.03341 0.94007 1.04226 1.21700 0.89685 0.95563 0.90231 1.20150 0.99537 0.91831 0.84689 1.56002 1.87919 1.32703 1.11599 1.05260 0.78370 0.71503 0.74507 1.93550 1.60343 1.67987 1.71460 1.93512 1.88241 1.84500 1.29847 1.29990 1.19810 1.06042 1.12837 1.18272 0.94538 0.89503 0.93612 1.20494 1.20665 1.13496 1.00773 0.91357 1.24938 0.93759 0.96779 0.96709 1.69958 1.33826 1.38495 1.08787 0.86656 0.80138 0.83503 0.77988 1.19401 1.21122 1.19891 1.23203 1.08040 1.01609 0.91704 1.22554 0.93550 1.01040 1.00834 1.68168 1.09616 1.30503 1.13383 0.89518 0.89362 0.89644 0.81260 0.82955 0.89396 0.87700 0.75864 0.84756 0.88128 0.92663 0.90669 0.89506 0.89570 0.91518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -0.76 10.32 36.01 0.37 -0.39 16 2 C 0.32 3.82 7.64 -157.19 -1.20 2.62 16 3 N -0.52 -5.93 10.33 -10.72 -0.11 -6.04 16 4 C 0.15 1.37 11.31 -17.20 -0.19 1.18 16 5 C -0.22 -2.10 9.84 -39.32 -0.39 -2.48 16 6 C 0.18 2.19 6.22 -82.25 -0.51 1.68 16 7 C 0.17 2.18 6.48 -5.20 -0.03 2.14 16 8 N -1.13 -16.57 5.88 -11.66 -0.07 -16.64 16 9 S 2.61 51.37 5.19 -107.50 -0.56 50.81 16 10 O -0.94 -22.27 17.16 -57.54 -0.99 -23.26 16 11 O -0.97 -21.04 18.08 -57.54 -1.04 -22.08 16 12 C -0.55 -11.03 5.93 37.16 0.22 -10.81 16 13 C 0.04 1.02 1.32 -155.65 -0.21 0.82 16 14 C -0.52 -13.91 8.18 -34.44 -0.28 -14.19 16 15 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 16 C 0.08 2.23 5.38 -17.82 -0.10 2.13 16 17 N -0.88 -23.50 12.98 55.43 0.72 -22.78 16 18 Si 0.89 21.12 29.55 -169.99 -5.02 16.09 16 19 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 20 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 21 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 22 C -0.21 -4.48 9.96 -26.69 -0.27 -4.75 16 23 C -0.14 -3.12 9.49 -26.69 -0.25 -3.37 16 24 N -0.50 -6.94 10.27 -6.99 -0.07 -7.01 16 25 H 0.09 0.66 8.14 -51.93 -0.42 0.23 16 26 H 0.09 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.17 0.92 8.06 -52.49 -0.42 0.50 16 29 H 0.15 1.00 8.06 -52.48 -0.42 0.58 16 30 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 31 H 0.10 1.55 7.69 -51.93 -0.40 1.15 16 32 H 0.41 5.29 8.61 -34.47 -0.30 5.00 16 33 H 0.13 2.73 8.14 -51.93 -0.42 2.30 16 34 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 35 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 36 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 37 H 0.09 1.85 8.14 -51.93 -0.42 1.43 16 38 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 39 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 LS Contribution 352.69 15.07 5.32 5.32 Total: -1.00 -34.37 352.69 -9.97 -44.34 By element: Atomic # 1 Polarization: 11.98 SS G_CDS: -5.31 Total: 6.67 kcal Atomic # 6 Polarization: -22.58 SS G_CDS: -2.84 Total: -25.42 kcal Atomic # 7 Polarization: -52.94 SS G_CDS: 0.47 Total: -52.47 kcal Atomic # 8 Polarization: -43.31 SS G_CDS: -2.03 Total: -45.34 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.09 kcal Atomic # 16 Polarization: 51.37 SS G_CDS: -0.56 Total: 50.81 kcal Total LS contribution 5.32 Total: 5.32 kcal Total: -34.37 -9.97 -44.34 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364787320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.841 kcal (2) G-P(sol) polarization free energy of solvation -34.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.343 kcal (6) G-S(sol) free energy of system = (1) + (5) -1.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds