Wall clock time and date at job start Tue Mar 31 2020 09:47:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.31810 * 119.12062 * 2 1 4 4 C 1.32318 * 120.81629 * 180.02562 * 3 2 1 5 5 C 1.38615 * 119.10259 * 0.02562 * 4 3 2 6 6 C 1.38580 * 118.40285 * 359.97438 * 5 4 3 7 7 C 1.50693 * 120.44961 * 180.02562 * 6 5 4 8 8 N 1.46503 * 109.47116 * 94.99961 * 7 6 5 9 9 S 1.65608 * 119.99784 * 165.00229 * 8 7 6 10 10 O 1.42097 * 104.27391 * 308.92560 * 9 8 7 11 11 O 1.42096 * 104.27529 * 181.07113 * 9 8 7 12 12 C 1.81395 * 104.45080 * 64.99773 * 9 8 7 13 13 C 1.53005 * 109.46896 * 173.81303 * 12 9 8 14 14 C 1.50696 * 115.55086 * 65.19495 * 13 12 9 15 15 H 1.07996 * 120.00176 * 264.78360 * 14 13 12 16 16 C 1.37880 * 119.99679 * 84.78351 * 14 13 12 17 17 N 1.31511 * 120.00207 * 352.22603 * 16 14 13 18 18 Si 1.86799 * 119.99704 * 172.22757 * 16 14 13 19 19 H 1.48501 * 109.47255 * 59.99743 * 18 16 14 20 20 H 1.48504 * 109.47179 * 180.02562 * 18 16 14 21 21 H 1.48501 * 109.47176 * 300.00034 * 18 16 14 22 22 C 1.53004 * 117.49668 * 279.52225 * 13 12 9 23 23 C 1.53006 * 117.49573 * 210.86846 * 13 12 9 24 24 N 1.31780 * 119.12071 * 180.30144 * 2 1 3 25 25 H 1.08999 * 109.47315 * 89.99823 * 1 2 3 26 26 H 1.09000 * 109.46916 * 209.99948 * 1 2 3 27 27 H 1.09000 * 109.47394 * 329.99505 * 1 2 3 28 28 H 1.08001 * 120.44861 * 180.02562 * 4 3 2 29 29 H 1.08008 * 120.80035 * 180.02562 * 5 4 3 30 30 H 1.09000 * 109.47584 * 334.99826 * 7 6 5 31 31 H 1.08996 * 109.47443 * 215.00119 * 7 6 5 32 32 H 0.96996 * 120.00407 * 344.99863 * 8 7 6 33 33 H 1.08997 * 109.47576 * 293.81182 * 12 9 8 34 34 H 1.09004 * 109.47208 * 53.81711 * 12 9 8 35 35 H 0.96997 * 119.99944 * 185.02413 * 17 16 14 36 36 H 1.09004 * 117.50060 * 0.02562 * 22 13 12 37 37 H 1.08995 * 117.49518 * 145.02265 * 22 13 12 38 38 H 1.08999 * 117.49430 * 214.97757 * 23 13 12 39 39 H 1.08997 * 117.50062 * 359.97438 * 23 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.1485 1.1515 0.0000 4 6 3.4711 1.1906 -0.0005 5 6 4.1808 0.0000 -0.0016 6 6 3.4713 -1.1904 -0.0015 7 6 4.1961 -2.5115 -0.0021 8 7 4.3260 -2.9979 1.3737 9 16 4.7387 -4.5762 1.6585 10 8 3.8252 -5.3251 0.8686 11 8 4.7440 -4.6869 3.0752 12 6 6.4225 -4.7295 1.0017 13 6 6.9796 -6.1127 1.3442 14 6 6.2748 -7.2761 0.6956 15 1 5.4954 -7.8005 1.2285 16 6 6.6249 -7.6710 -0.5782 17 7 7.4619 -6.9438 -1.2854 18 14 5.9105 -9.2391 -1.2993 19 1 4.4304 -9.1305 -1.3515 20 1 6.4413 -9.4396 -2.6717 21 1 6.2922 -10.3943 -0.4479 22 6 7.5362 -6.3208 2.7541 23 6 8.4896 -6.2326 1.5598 24 7 2.1483 -1.1512 -0.0061 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8900 0.5138 27 1 -0.3634 0.8899 0.5139 28 1 3.9906 2.1375 -0.0001 29 1 5.2609 -0.0001 -0.0016 30 1 5.1873 -2.3821 -0.4368 31 1 3.6327 -3.2349 -0.5915 32 1 4.1704 -2.3954 2.1178 33 1 6.4032 -4.6035 -0.0808 34 1 7.0569 -3.9622 1.4456 35 1 7.6519 -7.1812 -2.2065 36 1 7.5052 -5.4724 3.4378 37 1 7.3929 -7.2994 3.2123 38 1 8.9732 -7.1531 1.2329 39 1 9.0862 -5.3262 1.4573 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364787320.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:41 Heat of formation + Delta-G solvation = -26.806702 kcal Electronic energy + Delta-G solvation = -23525.731867 eV Core-core repulsion = 19981.487765 eV Total energy + Delta-G solvation = -3544.244102 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -42.11085 -38.54712 -37.99145 -37.07858 -36.74820 -34.50556 -34.06653 -33.80244 -29.84032 -29.55731 -27.97961 -27.45826 -24.39096 -23.14620 -22.96410 -21.53271 -20.30627 -18.87740 -18.53827 -18.35148 -17.72928 -16.81539 -16.77763 -16.60181 -16.21844 -16.12509 -15.75527 -15.40930 -14.97306 -14.88449 -14.16481 -14.02063 -13.72539 -13.62917 -13.49111 -13.24867 -13.12165 -12.94279 -12.91349 -12.85571 -12.84029 -12.42816 -12.19641 -11.89899 -11.87361 -11.77885 -11.54957 -10.86243 -10.64011 -10.52188 -10.42989 -10.27705 -9.86353 -8.18192 -6.31881 -0.61867 -0.12736 0.05573 1.40456 1.42003 1.49286 2.00623 2.41209 2.72853 2.79318 2.97972 3.09358 3.10179 3.37996 3.41989 3.53190 3.84611 4.00125 4.13861 4.28472 4.32564 4.42525 4.51926 4.54107 4.56700 4.61495 4.68264 4.73994 4.87523 4.90698 5.01067 5.04817 5.24519 5.44968 5.49210 5.62069 5.73582 5.99461 6.02448 6.24742 6.73472 7.08078 7.40240 8.88488 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.018949 B = 0.003787 C = 0.003580 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1477.315441 B = 7391.256262 C = 7819.985704 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.085 4.085 2 C 0.298 3.702 3 N -0.533 5.533 4 C 0.151 3.849 5 C -0.208 4.208 6 C 0.154 3.846 7 C 0.159 3.841 8 N -1.109 6.109 9 S 2.622 3.378 10 O -0.993 6.993 11 O -0.994 6.994 12 C -0.546 4.546 13 C 0.010 3.990 14 C -0.537 4.537 15 H 0.046 0.954 16 C 0.047 3.953 17 N -0.888 5.888 18 Si 0.930 3.070 19 H -0.279 1.279 20 H -0.273 1.273 21 H -0.270 1.270 22 C -0.199 4.199 23 C -0.135 4.135 24 N -0.539 5.539 25 H 0.096 0.904 26 H 0.083 0.917 27 H 0.099 0.901 28 H 0.211 0.789 29 H 0.187 0.813 30 H 0.122 0.878 31 H 0.079 0.921 32 H 0.420 0.580 33 H 0.130 0.870 34 H 0.142 0.858 35 H 0.266 0.734 36 H 0.100 0.900 37 H 0.079 0.921 38 H 0.065 0.935 39 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.807 18.433 0.862 18.841 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.031 3.969 3 N -0.248 5.248 4 C -0.015 4.015 5 C -0.230 4.230 6 C 0.006 3.994 7 C 0.033 3.967 8 N -0.869 5.869 9 S 2.720 3.280 10 O -0.982 6.982 11 O -0.984 6.984 12 C -0.680 4.680 13 C 0.007 3.993 14 C -0.574 4.574 15 H 0.064 0.936 16 C -0.156 4.156 17 N -0.524 5.524 18 Si 0.756 3.244 19 H -0.205 1.205 20 H -0.198 1.198 21 H -0.195 1.195 22 C -0.236 4.236 23 C -0.174 4.174 24 N -0.255 5.255 25 H 0.115 0.885 26 H 0.102 0.898 27 H 0.117 0.883 28 H 0.227 0.773 29 H 0.205 0.795 30 H 0.140 0.860 31 H 0.098 0.902 32 H 0.255 0.745 33 H 0.148 0.852 34 H 0.160 0.840 35 H 0.075 0.925 36 H 0.119 0.881 37 H 0.098 0.902 38 H 0.083 0.917 39 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -5.234 17.628 0.942 18.412 hybrid contribution 0.933 -0.703 -0.583 1.306 sum -4.300 16.925 0.359 17.467 Atomic orbital electron populations 1.20661 0.84175 1.04703 1.04750 1.23797 0.99490 0.83120 0.90499 1.68342 1.11582 1.30076 1.14829 1.23989 0.89033 1.00226 0.88275 1.23184 1.04930 0.92713 1.02165 1.21684 0.89641 0.96031 0.91994 1.20349 1.01252 0.91949 0.83199 1.55422 1.87422 1.31070 1.12994 1.04469 0.78049 0.72085 0.73375 1.93492 1.62092 1.70296 1.72352 1.93468 1.88503 1.85429 1.31044 1.29832 1.20122 1.05156 1.12854 1.18406 0.95433 0.90304 0.95126 1.20673 1.20581 1.14974 1.01202 0.93588 1.25436 0.94341 0.98748 0.97093 1.69983 1.34329 1.39188 1.08937 0.86039 0.78918 0.81352 0.78104 1.20489 1.19770 1.19478 1.23254 1.06697 1.02311 0.91340 1.22521 0.92894 1.01222 1.00799 1.68118 1.10800 1.31761 1.14788 0.88546 0.89820 0.88279 0.77285 0.79531 0.86038 0.90223 0.74532 0.85165 0.83956 0.92478 0.88131 0.90233 0.91678 0.88944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.46 10.32 71.24 0.74 -0.72 16 2 C 0.30 6.98 7.64 138.75 1.06 8.04 16 3 N -0.53 -11.07 10.33 -187.84 -1.94 -13.01 16 4 C 0.15 2.25 11.31 84.71 0.96 3.21 16 5 C -0.21 -3.24 9.84 22.44 0.22 -3.02 16 6 C 0.15 3.58 6.22 42.56 0.26 3.85 16 7 C 0.16 4.01 6.48 85.63 0.56 4.56 16 8 N -1.11 -31.25 5.88 -190.80 -1.12 -32.37 16 9 S 2.62 102.27 5.19 -56.49 -0.29 101.98 16 10 O -0.99 -48.16 17.16 -127.65 -2.19 -50.35 16 11 O -0.99 -42.47 18.08 -127.65 -2.31 -44.78 16 12 C -0.55 -20.80 5.93 71.98 0.43 -20.37 16 13 C 0.01 0.45 1.32 -52.92 -0.07 0.38 16 14 C -0.54 -29.26 8.18 25.60 0.21 -29.05 16 15 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 16 C 0.05 2.54 5.38 84.66 0.46 2.99 16 17 N -0.89 -47.39 12.98 21.45 0.28 -47.11 16 18 Si 0.93 43.57 29.55 68.60 2.03 45.59 16 19 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 20 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 21 H -0.27 -12.34 7.11 99.48 0.71 -11.63 16 22 C -0.20 -8.26 9.96 30.62 0.30 -7.96 16 23 C -0.14 -5.79 9.49 30.62 0.29 -5.50 16 24 N -0.54 -14.74 10.27 -176.03 -1.81 -16.55 16 25 H 0.10 1.41 8.14 -2.39 -0.02 1.40 16 26 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 27 H 0.10 1.37 8.14 -2.39 -0.02 1.35 16 28 H 0.21 1.28 8.06 -2.91 -0.02 1.26 16 29 H 0.19 1.51 8.06 -2.91 -0.02 1.49 16 30 H 0.12 2.20 8.06 -2.39 -0.02 2.18 16 31 H 0.08 2.41 7.69 -2.39 -0.02 2.40 16 32 H 0.42 10.18 8.61 -96.75 -0.83 9.35 16 33 H 0.13 5.10 8.14 -2.39 -0.02 5.08 16 34 H 0.14 4.12 8.09 -2.39 -0.02 4.11 16 35 H 0.27 13.54 8.32 -92.71 -0.77 12.77 16 36 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 37 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 38 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 39 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 Total: -1.00 -75.43 352.69 -1.71 -77.14 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.23 Total: 23.04 kcal Atomic # 6 Polarization: -49.00 SS G_CDS: 5.41 Total: -43.59 kcal Atomic # 7 Polarization: -104.45 SS G_CDS: -4.59 Total: -109.04 kcal Atomic # 8 Polarization: -90.63 SS G_CDS: -4.50 Total: -95.13 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 102.27 SS G_CDS: -0.29 Total: 101.98 kcal Total: -75.43 -1.71 -77.14 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364787320.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.333 kcal (2) G-P(sol) polarization free energy of solvation -75.428 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.095 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.711 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.140 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds