Wall clock time and date at job start Tue Mar 31 2020 09:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38615 * 120.44804 * 2 1 4 4 C 1.38580 * 118.40285 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.44961 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47116 * 94.99961 * 5 4 3 7 7 S 1.65608 * 119.99784 * 165.00229 * 6 5 4 8 8 O 1.42097 * 104.27391 * 308.92560 * 7 6 5 9 9 O 1.42096 * 104.27529 * 181.07113 * 7 6 5 10 10 C 1.81395 * 104.45080 * 64.99773 * 7 6 5 11 11 C 1.53005 * 109.46896 * 173.81303 * 10 7 6 12 12 C 1.50696 * 115.55086 * 65.19495 * 11 10 7 13 13 H 1.07996 * 120.00176 * 264.78360 * 12 11 10 14 14 C 1.37880 * 119.99679 * 84.78351 * 12 11 10 15 15 N 1.31511 * 120.00207 * 352.22603 * 14 12 11 16 16 Si 1.86799 * 119.99704 * 172.22757 * 14 12 11 17 17 H 1.48501 * 109.47255 * 59.99743 * 16 14 12 18 18 H 1.48504 * 109.47179 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47176 * 300.00034 * 16 14 12 20 20 C 1.53004 * 117.49668 * 279.52225 * 11 10 7 21 21 C 1.53006 * 117.49573 * 210.86846 * 11 10 7 22 22 N 1.32350 * 119.10224 * 0.27517 * 4 3 2 23 23 C 1.31780 * 120.81569 * 359.44280 * 22 4 3 24 24 N 1.31810 * 121.75795 * 0.57378 * 23 22 4 25 25 H 1.09000 * 109.46873 * 90.00284 * 1 2 3 26 26 H 1.09005 * 109.47040 * 209.99442 * 1 2 3 27 27 H 1.08994 * 109.47108 * 330.00136 * 1 2 3 28 28 H 1.08008 * 120.80035 * 0.04786 * 3 2 1 29 29 H 1.09000 * 109.47584 * 334.99826 * 5 4 3 30 30 H 1.08996 * 109.47443 * 215.00119 * 5 4 3 31 31 H 0.96996 * 120.00407 * 344.99863 * 6 5 4 32 32 H 1.08997 * 109.47576 * 293.81182 * 10 7 6 33 33 H 1.09004 * 109.47208 * 53.81711 * 10 7 6 34 34 H 0.96997 * 119.99944 * 185.02413 * 15 14 12 35 35 H 1.09004 * 117.50060 * 0.02562 * 20 11 10 36 36 H 1.08995 * 117.49518 * 145.02265 * 20 11 10 37 37 H 1.08999 * 117.49430 * 214.97757 * 21 11 10 38 38 H 1.08997 * 117.50062 * 359.97438 * 21 11 10 39 39 H 1.08006 * 119.11762 * 180.26379 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4039 2.4165 0.0000 6 7 4.7683 2.7628 1.3761 7 16 5.9537 3.8835 1.6617 8 8 7.0494 3.4439 0.8709 9 8 6.0486 3.9398 3.0784 10 6 5.2778 5.4342 1.0069 11 6 6.2226 6.5876 1.3503 12 6 7.5814 6.5301 0.7011 13 1 8.4162 6.0985 1.2332 14 6 7.7587 7.0285 -0.5721 15 7 6.7182 7.4132 -1.2785 16 14 9.4768 7.1573 -1.2938 17 1 10.0935 5.8075 -1.3477 18 1 9.3966 7.7206 -2.6655 19 1 10.3062 8.0467 -0.4416 20 6 6.1378 7.1741 2.7609 21 6 5.6014 7.9689 1.5678 22 7 4.1964 -0.0331 -0.0066 23 6 3.4956 -1.1491 -0.0011 24 7 2.1776 -1.1407 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6899 2.1419 0.0008 29 1 3.8135 3.2237 -0.4336 30 1 5.3089 2.2712 -0.5898 31 1 4.3153 2.3358 2.1199 32 1 5.1761 5.3579 -0.0757 33 1 4.3001 5.6208 1.4513 34 1 6.8346 7.6950 -2.1993 35 1 5.4092 6.7380 3.4444 36 1 7.0648 7.5187 3.2192 37 1 6.1757 8.8360 1.2416 38 1 4.5197 8.0560 1.4657 39 1 4.0152 -2.0960 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364810518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:23 Heat of formation + Delta-G solvation = -3.719292 kcal Electronic energy + Delta-G solvation = -23496.599892 eV Core-core repulsion = 19953.356935 eV Total energy + Delta-G solvation = -3543.242957 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.30248 -36.78746 -36.37886 -35.95752 -35.09351 -34.25378 -32.38534 -32.06112 -28.99983 -28.21140 -26.50674 -25.47070 -24.30014 -21.84937 -21.24028 -19.79299 -18.75449 -17.89719 -17.27346 -16.71877 -16.31277 -15.74972 -15.69826 -15.15125 -15.13397 -14.72855 -14.30065 -13.85114 -13.73628 -13.50493 -13.24474 -13.17642 -13.00408 -12.54568 -11.98045 -11.84860 -11.52154 -11.31108 -11.18708 -11.08749 -11.05305 -10.91217 -10.61949 -10.60046 -10.48371 -10.14984 -9.79575 -9.76451 -9.45128 -9.34779 -8.98821 -8.57941 -8.12496 -6.15967 -4.26485 0.59965 0.73617 1.09645 3.30094 3.32512 3.34389 3.41540 3.64706 3.77210 3.77992 4.08895 4.36637 4.51247 4.71229 4.72699 4.93239 5.02423 5.11669 5.15784 5.17272 5.18613 5.28791 5.45416 5.53083 5.59375 5.64366 5.90191 5.96764 6.16912 6.22323 6.33586 6.57302 6.69875 6.81029 6.95075 7.10226 7.21953 7.36746 7.78907 7.88427 8.18104 8.79085 9.45012 10.91661 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.003715 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.086965 B = 7534.711784 C = 7850.636429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.172 3.828 3 C -0.214 4.214 4 C 0.175 3.825 5 C 0.165 3.835 6 N -1.126 6.126 7 S 2.606 3.394 8 O -0.944 6.944 9 O -0.970 6.970 10 C -0.554 4.554 11 C 0.043 3.957 12 C -0.517 4.517 13 H 0.068 0.932 14 C 0.083 3.917 15 N -0.875 5.875 16 Si 0.890 3.110 17 H -0.269 1.269 18 H -0.286 1.286 19 H -0.274 1.274 20 C -0.208 4.208 21 C -0.140 4.140 22 N -0.507 5.507 23 C 0.298 3.702 24 N -0.524 5.524 25 H 0.086 0.914 26 H 0.082 0.918 27 H 0.082 0.918 28 H 0.152 0.848 29 H 0.087 0.913 30 H 0.105 0.895 31 H 0.409 0.591 32 H 0.134 0.866 33 H 0.100 0.900 34 H 0.264 0.736 35 H 0.075 0.925 36 H 0.086 0.914 37 H 0.086 0.914 38 H 0.066 0.934 39 H 0.198 0.802 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.534 -10.989 0.818 17.453 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.026 3.974 3 C -0.237 4.237 4 C 0.028 3.972 5 C 0.038 3.962 6 N -0.882 5.882 7 S 2.703 3.297 8 O -0.933 6.933 9 O -0.961 6.961 10 C -0.687 4.687 11 C 0.041 3.959 12 C -0.554 4.554 13 H 0.086 0.914 14 C -0.122 4.122 15 N -0.511 5.511 16 Si 0.717 3.283 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.199 1.199 20 C -0.246 4.246 21 C -0.180 4.180 22 N -0.222 5.222 23 C 0.010 3.990 24 N -0.239 5.239 25 H 0.104 0.896 26 H 0.101 0.899 27 H 0.100 0.900 28 H 0.169 0.831 29 H 0.105 0.895 30 H 0.123 0.877 31 H 0.241 0.759 32 H 0.152 0.848 33 H 0.119 0.881 34 H 0.073 0.927 35 H 0.093 0.907 36 H 0.105 0.895 37 H 0.104 0.896 38 H 0.085 0.915 39 H 0.215 0.785 Dipole moment (debyes) X Y Z Total from point charges -12.161 -11.843 0.886 16.998 hybrid contribution -0.371 0.963 -0.586 1.187 sum -12.532 -10.879 0.300 16.598 Atomic orbital electron populations 1.20797 0.87692 1.04156 1.03770 1.21777 0.97715 0.88177 0.89725 1.22720 0.95535 1.00952 1.04453 1.21696 0.91320 0.93952 0.90267 1.20148 1.00093 0.91302 0.84683 1.56002 1.60559 1.60061 1.11601 1.05264 0.73869 0.76016 0.74506 1.93550 1.49080 1.79296 1.71418 1.93512 1.85587 1.87151 1.29845 1.29991 1.08240 1.17625 1.12832 1.18272 0.94351 0.89712 0.93602 1.20496 0.92425 1.41702 1.00821 0.91351 1.24938 0.97104 0.93437 0.96707 1.69958 1.29549 1.42730 1.08829 0.86656 0.84551 0.79092 0.77989 1.19386 1.21120 1.19895 1.23203 1.02316 1.07325 0.91710 1.22555 0.97663 0.96911 1.00848 1.68313 1.41986 0.98682 1.13195 1.25036 0.86588 0.96946 0.90392 1.68271 1.10521 1.30451 1.14674 0.89588 0.89913 0.89954 0.83056 0.89452 0.87658 0.75861 0.84750 0.88124 0.92661 0.90666 0.89502 0.89565 0.91514 0.78539 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.65 10.22 36.01 0.37 -0.28 16 2 C 0.17 1.67 6.82 -82.24 -0.56 1.11 16 3 C -0.21 -2.10 9.52 -39.32 -0.37 -2.47 16 4 C 0.18 2.16 6.22 -82.25 -0.51 1.65 16 5 C 0.16 2.18 6.48 -5.20 -0.03 2.14 16 6 N -1.13 -16.59 5.88 -11.66 -0.07 -16.65 16 7 S 2.61 51.47 5.19 -107.50 -0.56 50.91 16 8 O -0.94 -22.34 17.16 -57.54 -0.99 -23.33 16 9 O -0.97 -21.06 18.08 -57.54 -1.04 -22.10 16 10 C -0.55 -11.04 5.93 37.16 0.22 -10.82 16 11 C 0.04 1.02 1.32 -155.65 -0.21 0.82 16 12 C -0.52 -13.93 8.18 -34.44 -0.28 -14.21 16 13 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 14 C 0.08 2.23 5.38 -17.82 -0.10 2.14 16 15 N -0.88 -23.50 12.98 55.43 0.72 -22.78 16 16 Si 0.89 21.13 29.55 -169.99 -5.02 16.11 16 17 H -0.27 -6.48 7.11 56.52 0.40 -6.08 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.27 -6.40 7.11 56.52 0.40 -6.00 16 20 C -0.21 -4.48 9.96 -26.69 -0.27 -4.75 16 21 C -0.14 -3.12 9.49 -26.69 -0.25 -3.37 16 22 N -0.51 -6.80 10.38 -10.80 -0.11 -6.92 16 23 C 0.30 3.37 12.28 -92.15 -1.13 2.23 16 24 N -0.52 -5.83 10.38 -10.80 -0.11 -5.94 16 25 H 0.09 0.43 8.14 -51.93 -0.42 0.01 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.08 0.36 8.10 -51.93 -0.42 -0.06 16 28 H 0.15 1.06 8.06 -52.48 -0.42 0.64 16 29 H 0.09 0.91 8.06 -51.93 -0.42 0.49 16 30 H 0.11 1.56 7.69 -51.93 -0.40 1.16 16 31 H 0.41 5.29 8.61 -34.47 -0.30 5.00 16 32 H 0.13 2.73 8.14 -51.93 -0.42 2.31 16 33 H 0.10 1.65 8.09 -51.92 -0.42 1.23 16 34 H 0.26 6.78 8.32 -40.82 -0.34 6.44 16 35 H 0.07 1.47 8.14 -51.93 -0.42 1.04 16 36 H 0.09 1.86 8.14 -51.93 -0.42 1.43 16 37 H 0.09 2.03 8.14 -51.93 -0.42 1.60 16 38 H 0.07 1.34 8.14 -51.93 -0.42 0.92 16 39 H 0.20 1.59 8.06 -52.48 -0.42 1.17 16 LS Contribution 352.54 15.07 5.31 5.31 Total: -1.00 -34.27 352.54 -10.30 -44.58 By element: Atomic # 1 Polarization: 11.94 SS G_CDS: -5.31 Total: 6.64 kcal Atomic # 6 Polarization: -22.69 SS G_CDS: -3.13 Total: -25.82 kcal Atomic # 7 Polarization: -52.73 SS G_CDS: 0.43 Total: -52.30 kcal Atomic # 8 Polarization: -43.40 SS G_CDS: -2.03 Total: -45.43 kcal Atomic # 14 Polarization: 21.13 SS G_CDS: -5.02 Total: 16.11 kcal Atomic # 16 Polarization: 51.47 SS G_CDS: -0.56 Total: 50.91 kcal Total LS contribution 5.31 Total: 5.31 kcal Total: -34.27 -10.30 -44.58 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.858 kcal (2) G-P(sol) polarization free energy of solvation -34.274 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.583 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.302 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.577 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.719 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds