Wall clock time and date at job start Tue Mar 31 2020 09:33:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38615 * 120.44804 * 2 1 4 4 C 1.38580 * 118.40285 * 180.02562 * 3 2 1 5 5 C 1.50693 * 120.44961 * 180.02562 * 4 3 2 6 6 N 1.46503 * 109.47116 * 94.99961 * 5 4 3 7 7 S 1.65608 * 119.99784 * 165.00229 * 6 5 4 8 8 O 1.42097 * 104.27391 * 308.92560 * 7 6 5 9 9 O 1.42096 * 104.27529 * 181.07113 * 7 6 5 10 10 C 1.81395 * 104.45080 * 64.99773 * 7 6 5 11 11 C 1.53005 * 109.46896 * 173.81303 * 10 7 6 12 12 C 1.50696 * 115.55086 * 65.19495 * 11 10 7 13 13 H 1.07996 * 120.00176 * 264.78360 * 12 11 10 14 14 C 1.37880 * 119.99679 * 84.78351 * 12 11 10 15 15 N 1.31511 * 120.00207 * 352.22603 * 14 12 11 16 16 Si 1.86799 * 119.99704 * 172.22757 * 14 12 11 17 17 H 1.48501 * 109.47255 * 59.99743 * 16 14 12 18 18 H 1.48504 * 109.47179 * 180.02562 * 16 14 12 19 19 H 1.48501 * 109.47176 * 300.00034 * 16 14 12 20 20 C 1.53004 * 117.49668 * 279.52225 * 11 10 7 21 21 C 1.53006 * 117.49573 * 210.86846 * 11 10 7 22 22 N 1.32350 * 119.10224 * 0.27517 * 4 3 2 23 23 C 1.31780 * 120.81569 * 359.44280 * 22 4 3 24 24 N 1.31810 * 121.75795 * 0.57378 * 23 22 4 25 25 H 1.09000 * 109.46873 * 90.00284 * 1 2 3 26 26 H 1.09005 * 109.47040 * 209.99442 * 1 2 3 27 27 H 1.08994 * 109.47108 * 330.00136 * 1 2 3 28 28 H 1.08008 * 120.80035 * 0.04786 * 3 2 1 29 29 H 1.09000 * 109.47584 * 334.99826 * 5 4 3 30 30 H 1.08996 * 109.47443 * 215.00119 * 5 4 3 31 31 H 0.96996 * 120.00407 * 344.99863 * 6 5 4 32 32 H 1.08997 * 109.47576 * 293.81182 * 10 7 6 33 33 H 1.09004 * 109.47208 * 53.81711 * 10 7 6 34 34 H 0.96997 * 119.99944 * 185.02413 * 15 14 12 35 35 H 1.09004 * 117.50060 * 0.02562 * 20 11 10 36 36 H 1.08995 * 117.49518 * 145.02265 * 20 11 10 37 37 H 1.08999 * 117.49430 * 214.97757 * 21 11 10 38 38 H 1.08997 * 117.50062 * 359.97438 * 21 11 10 39 39 H 1.08006 * 119.11762 * 180.26379 * 23 22 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2095 1.1950 0.0000 4 6 3.5944 1.1455 -0.0005 5 6 4.4039 2.4165 0.0000 6 7 4.7683 2.7628 1.3761 7 16 5.9537 3.8835 1.6617 8 8 7.0494 3.4439 0.8709 9 8 6.0486 3.9398 3.0784 10 6 5.2778 5.4342 1.0069 11 6 6.2226 6.5876 1.3503 12 6 7.5814 6.5301 0.7011 13 1 8.4162 6.0985 1.2332 14 6 7.7587 7.0285 -0.5721 15 7 6.7182 7.4132 -1.2785 16 14 9.4768 7.1573 -1.2938 17 1 10.0935 5.8075 -1.3477 18 1 9.3966 7.7206 -2.6655 19 1 10.3062 8.0467 -0.4416 20 6 6.1378 7.1741 2.7609 21 6 5.6014 7.9689 1.5678 22 7 4.1964 -0.0331 -0.0066 23 6 3.4956 -1.1491 -0.0011 24 7 2.1776 -1.1407 -0.0006 25 1 -0.3633 -0.0001 -1.0277 26 1 -0.3633 -0.8901 0.5138 27 1 -0.3633 0.8899 0.5138 28 1 1.6899 2.1419 0.0008 29 1 3.8135 3.2237 -0.4336 30 1 5.3089 2.2712 -0.5898 31 1 4.3153 2.3358 2.1199 32 1 5.1761 5.3579 -0.0757 33 1 4.3001 5.6208 1.4513 34 1 6.8346 7.6950 -2.1993 35 1 5.4092 6.7380 3.4444 36 1 7.0648 7.5187 3.2192 37 1 6.1757 8.8360 1.2416 38 1 4.5197 8.0560 1.4657 39 1 4.0152 -2.0960 -0.0019 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364810518.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:33:23 Heat of formation + Delta-G solvation = -28.200001 kcal Electronic energy + Delta-G solvation = -23497.661455 eV Core-core repulsion = 19953.356935 eV Total energy + Delta-G solvation = -3544.304520 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.62 seconds Orbital eigenvalues (eV) -42.10859 -38.54598 -37.99212 -37.07932 -36.75061 -35.07966 -34.06512 -33.28305 -29.83995 -29.68631 -27.52068 -27.38499 -25.10268 -22.96233 -22.68746 -21.52906 -20.30355 -18.89300 -18.45272 -18.35486 -17.71549 -16.89109 -16.76012 -16.61965 -16.40832 -16.11550 -15.78375 -15.40059 -14.91566 -14.73236 -14.33999 -13.94215 -13.76392 -13.70415 -13.62508 -13.18144 -13.11977 -12.91917 -12.91045 -12.85184 -12.83910 -12.42710 -12.19477 -11.89577 -11.86174 -11.55740 -11.46697 -10.86152 -10.64030 -10.54115 -10.51540 -10.28850 -9.86287 -8.18105 -6.31810 -0.62088 -0.11004 0.00549 1.40563 1.42142 1.49439 2.00486 2.41331 2.74190 2.84962 3.01263 3.09419 3.11409 3.31128 3.41555 3.49933 3.85136 4.00432 4.06610 4.24770 4.31857 4.41331 4.50513 4.53783 4.61552 4.66403 4.73069 4.77242 4.87598 4.88645 5.01269 5.10017 5.24694 5.45535 5.49320 5.62291 5.73701 5.99506 6.02576 6.24837 6.73556 7.07652 7.40315 8.88579 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.019133 B = 0.003715 C = 0.003566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1463.086965 B = 7534.711784 C = 7850.636429 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.104 4.104 2 C 0.167 3.833 3 C -0.204 4.204 4 C 0.156 3.844 5 C 0.158 3.842 6 N -1.109 6.109 7 S 2.622 3.378 8 O -0.993 6.993 9 O -0.994 6.994 10 C -0.546 4.546 11 C 0.009 3.991 12 C -0.537 4.537 13 H 0.046 0.954 14 C 0.047 3.953 15 N -0.888 5.888 16 Si 0.930 3.070 17 H -0.279 1.279 18 H -0.273 1.273 19 H -0.270 1.270 20 C -0.199 4.199 21 C -0.135 4.135 22 N -0.543 5.543 23 C 0.289 3.711 24 N -0.535 5.535 25 H 0.099 0.901 26 H 0.083 0.917 27 H 0.104 0.896 28 H 0.184 0.816 29 H 0.121 0.879 30 H 0.081 0.919 31 H 0.420 0.580 32 H 0.130 0.870 33 H 0.143 0.857 34 H 0.266 0.734 35 H 0.101 0.899 36 H 0.079 0.921 37 H 0.065 0.935 38 H 0.092 0.908 39 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.170 -10.940 0.849 19.541 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.020 3.980 3 C -0.226 4.226 4 C 0.009 3.991 5 C 0.032 3.968 6 N -0.869 5.869 7 S 2.720 3.280 8 O -0.982 6.982 9 O -0.984 6.984 10 C -0.680 4.680 11 C 0.007 3.993 12 C -0.575 4.575 13 H 0.064 0.936 14 C -0.156 4.156 15 N -0.524 5.524 16 Si 0.756 3.244 17 H -0.205 1.205 18 H -0.198 1.198 19 H -0.195 1.195 20 C -0.236 4.236 21 C -0.174 4.174 22 N -0.258 5.258 23 C 0.002 3.998 24 N -0.251 5.251 25 H 0.118 0.882 26 H 0.101 0.899 27 H 0.123 0.877 28 H 0.201 0.799 29 H 0.139 0.861 30 H 0.099 0.901 31 H 0.255 0.745 32 H 0.149 0.851 33 H 0.161 0.839 34 H 0.075 0.925 35 H 0.119 0.881 36 H 0.098 0.902 37 H 0.083 0.917 38 H 0.111 0.889 39 H 0.234 0.766 Dipole moment (debyes) X Y Z Total from point charges -14.792 -11.789 0.929 18.938 hybrid contribution 0.388 0.893 -0.582 1.134 sum -14.404 -10.896 0.347 18.064 Atomic orbital electron populations 1.20922 0.84951 1.05314 1.04913 1.22447 0.99459 0.87711 0.88347 1.23008 0.94321 1.02476 1.02828 1.21640 0.92403 0.93159 0.91869 1.20349 0.99933 0.93295 0.83217 1.55422 1.59576 1.58920 1.12989 1.04479 0.73799 0.76356 0.73380 1.93492 1.52115 1.80326 1.72316 1.93468 1.86259 1.87667 1.31033 1.29834 1.09334 1.15955 1.12859 1.18407 0.94027 0.91743 0.95127 1.20676 0.93799 1.41738 1.01258 0.93587 1.25437 0.99570 0.93524 0.97092 1.69983 1.30306 1.43151 1.08981 0.86040 0.81789 0.78487 0.78107 1.20469 1.19758 1.19494 1.23255 1.02628 1.06376 0.91341 1.22522 0.98762 0.95339 1.00799 1.68267 1.43296 0.99674 1.14591 1.25449 0.86989 0.97214 0.90190 1.68359 1.10396 1.31386 1.14978 0.88245 0.89852 0.87723 0.79867 0.86137 0.90066 0.74517 0.85148 0.83935 0.92469 0.88117 0.90233 0.91670 0.88920 0.76605 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -0.90 10.22 71.24 0.73 -0.17 16 2 C 0.17 2.80 6.82 42.58 0.29 3.09 16 3 C -0.20 -3.41 9.52 22.44 0.21 -3.20 16 4 C 0.16 3.63 6.22 42.56 0.26 3.90 16 5 C 0.16 4.00 6.48 85.63 0.56 4.55 16 6 N -1.11 -31.25 5.88 -190.80 -1.12 -32.38 16 7 S 2.62 102.34 5.19 -56.49 -0.29 102.05 16 8 O -0.99 -48.23 17.16 -127.65 -2.19 -50.42 16 9 O -0.99 -42.47 18.08 -127.65 -2.31 -44.78 16 10 C -0.55 -20.80 5.93 71.98 0.43 -20.38 16 11 C 0.01 0.43 1.32 -52.92 -0.07 0.36 16 12 C -0.54 -29.29 8.18 25.60 0.21 -29.08 16 13 H 0.05 2.63 7.83 -2.91 -0.02 2.61 16 14 C 0.05 2.54 5.38 84.66 0.46 2.99 16 15 N -0.89 -47.36 12.98 21.45 0.28 -47.08 16 16 Si 0.93 43.57 29.55 68.60 2.03 45.59 16 17 H -0.28 -13.43 7.11 99.48 0.71 -12.72 16 18 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 19 H -0.27 -12.35 7.11 99.48 0.71 -11.64 16 20 C -0.20 -8.25 9.96 30.62 0.30 -7.95 16 21 C -0.14 -5.77 9.49 30.62 0.29 -5.48 16 22 N -0.54 -14.40 10.38 -188.08 -1.95 -16.35 16 23 C 0.29 6.34 12.28 180.88 2.22 8.56 16 24 N -0.54 -11.12 10.38 -188.07 -1.95 -13.07 16 25 H 0.10 0.65 8.14 -2.39 -0.02 0.63 16 26 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 27 H 0.10 0.46 8.10 -2.39 -0.02 0.45 16 28 H 0.18 1.75 8.06 -2.91 -0.02 1.73 16 29 H 0.12 2.19 8.06 -2.39 -0.02 2.17 16 30 H 0.08 2.45 7.69 -2.39 -0.02 2.43 16 31 H 0.42 10.17 8.61 -96.75 -0.83 9.34 16 32 H 0.13 5.11 8.14 -2.39 -0.02 5.09 16 33 H 0.14 4.13 8.09 -2.39 -0.02 4.11 16 34 H 0.27 13.53 8.32 -92.71 -0.77 12.76 16 35 H 0.10 3.64 8.14 -2.38 -0.02 3.62 16 36 H 0.08 3.37 8.14 -2.39 -0.02 3.35 16 37 H 0.06 3.03 8.14 -2.39 -0.02 3.01 16 38 H 0.09 3.43 8.14 -2.39 -0.02 3.41 16 39 H 0.22 3.41 8.06 -2.91 -0.02 3.39 16 Total: -1.00 -74.82 352.54 -1.38 -76.20 By element: Atomic # 1 Polarization: 22.81 SS G_CDS: 0.24 Total: 23.05 kcal Atomic # 6 Polarization: -48.71 SS G_CDS: 5.89 Total: -42.82 kcal Atomic # 7 Polarization: -104.12 SS G_CDS: -4.75 Total: -108.87 kcal Atomic # 8 Polarization: -90.70 SS G_CDS: -4.50 Total: -95.20 kcal Atomic # 14 Polarization: 43.57 SS G_CDS: 2.03 Total: 45.59 kcal Atomic # 16 Polarization: 102.34 SS G_CDS: -0.29 Total: 102.05 kcal Total: -74.82 -1.38 -76.20 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364810518.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.003 kcal (2) G-P(sol) polarization free energy of solvation -74.818 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.816 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.203 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.200 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.62 seconds