Wall clock time and date at job start Tue Mar 31 2020 09:45:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28914 * 124.84336 * 2 1 4 4 C 1.31892 * 117.18912 * 179.73482 * 3 2 1 5 5 C 1.50693 * 122.84695 * 180.02562 * 4 3 2 6 6 C 1.34339 * 114.30078 * 359.97438 * 4 3 2 7 7 N 1.39863 * 126.06428 * 180.02562 * 6 4 3 8 8 C 1.34778 * 119.99982 * 180.02562 * 7 6 4 9 9 O 1.21602 * 120.00123 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.64753 * 359.69506 * 10 8 7 12 12 C 1.55126 * 104.71989 * 155.81367 * 11 10 8 13 13 C 1.55160 * 101.48865 * 37.29724 * 12 11 10 14 14 O 1.42895 * 110.71830 * 82.69121 * 13 12 11 15 15 C 1.50700 * 110.87415 * 205.89817 * 13 12 11 16 16 H 1.07997 * 119.99820 * 355.06021 * 15 13 12 17 17 C 1.37873 * 120.00049 * 175.06557 * 15 13 12 18 18 N 1.31516 * 120.00041 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00061 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46907 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47155 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46996 * 299.99948 * 19 17 15 23 23 C 1.47020 * 125.64686 * 179.97438 * 10 8 7 24 24 S 1.70951 * 124.84084 * 179.69591 * 2 1 3 25 25 H 1.09000 * 109.47294 * 89.99788 * 1 2 3 26 26 H 1.08996 * 109.47066 * 210.00342 * 1 2 3 27 27 H 1.09001 * 109.46952 * 330.00147 * 1 2 3 28 28 H 1.08998 * 109.47535 * 90.02455 * 5 4 3 29 29 H 1.09006 * 109.46823 * 210.02348 * 5 4 3 30 30 H 1.09001 * 109.47477 * 330.02097 * 5 4 3 31 31 H 0.96995 * 120.00140 * 0.02562 * 7 6 4 32 32 H 1.08995 * 110.36446 * 274.74623 * 11 10 8 33 33 H 1.09000 * 110.36515 * 37.06746 * 11 10 8 34 34 H 1.08999 * 111.19784 * 279.18905 * 12 11 10 35 35 H 1.08998 * 110.90694 * 155.27585 * 12 11 10 36 36 H 0.96700 * 113.99949 * 185.02331 * 14 13 12 37 37 H 0.97001 * 119.99909 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.88643 * 300.44161 * 23 10 8 39 39 H 1.09002 * 109.88136 * 61.45600 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0580 0.0000 4 6 3.5507 0.8824 0.0054 5 6 4.5294 2.0282 0.0067 6 6 3.9355 -0.4047 0.0108 7 7 5.2546 -0.8697 0.0177 8 6 5.5021 -2.1945 0.0221 9 8 4.5786 -2.9856 0.0197 10 7 6.7732 -2.6426 0.0282 11 6 7.9818 -1.7985 0.0243 12 6 9.0874 -2.6901 0.6482 13 6 8.7267 -4.0824 0.0660 14 8 9.2574 -4.2319 -1.2523 15 6 9.2211 -5.1853 0.9661 16 1 9.8165 -4.9470 1.8350 17 6 8.9134 -6.4985 0.6802 18 7 8.1880 -6.7886 -0.3778 19 14 9.5268 -7.8657 1.7955 20 1 8.9937 -7.6626 3.1667 21 1 9.0626 -9.1761 1.2736 22 1 11.0111 -7.8451 1.8334 23 6 7.1840 -4.0543 0.0341 24 16 2.4837 -1.4031 0.0074 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 4.7618 2.3065 1.0346 29 1 5.4440 1.7254 -0.5034 30 1 4.0905 2.8815 -0.5104 31 1 5.9913 -0.2387 0.0193 32 1 8.2465 -1.5198 -0.9956 33 1 7.8246 -0.9081 0.6332 34 1 9.0238 -2.6933 1.7363 35 1 10.0761 -2.3725 0.3172 36 1 8.9960 -5.0532 -1.6907 37 1 7.9718 -7.7125 -0.5791 38 1 6.7857 -4.5527 0.9178 39 1 6.8207 -4.5498 -0.8662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001365045560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:00 Heat of formation + Delta-G solvation = -32.889751 kcal Electronic energy + Delta-G solvation = -23667.755254 eV Core-core repulsion = 20123.247371 eV Total energy + Delta-G solvation = -3544.507883 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.42716 -39.50618 -37.71127 -34.98924 -34.48449 -32.31566 -32.20354 -30.22079 -29.23036 -28.05140 -26.78323 -24.93897 -22.98773 -22.64608 -20.47620 -19.99758 -19.59809 -18.02010 -17.27968 -16.78969 -16.55914 -15.84521 -15.29589 -15.02727 -14.84572 -14.44786 -13.82543 -13.66767 -13.35263 -13.24991 -13.08737 -13.00061 -12.68908 -12.49940 -12.24258 -12.14228 -11.82077 -11.61799 -11.16732 -11.12508 -10.97551 -10.90907 -10.81830 -10.57730 -10.29016 -10.18112 -9.44552 -9.25726 -8.85658 -8.76050 -8.44948 -8.23687 -7.73641 -6.36432 -4.45576 0.88299 1.26494 1.95781 2.71730 2.77378 3.18342 3.24309 3.25920 3.40245 4.06613 4.21352 4.22755 4.90724 4.97778 5.06975 5.16404 5.32297 5.40421 5.43061 5.50278 5.53122 5.61134 5.74124 5.81943 5.88568 5.90222 6.08728 6.34696 6.43370 6.52363 6.70607 6.73006 6.96264 7.15398 7.31513 7.64742 7.89817 7.91734 8.06897 8.56292 8.61557 9.19352 9.29127 10.71407 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.003446 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.654290 B = 8123.655685 C = 8881.598645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C -0.035 4.035 3 N -0.451 5.451 4 C -0.010 4.010 5 C -0.068 4.068 6 C 0.031 3.969 7 N -0.644 5.644 8 C 0.705 3.295 9 O -0.565 6.565 10 N -0.617 5.617 11 C 0.096 3.904 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.584 6.584 15 C -0.540 4.540 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.893 5.893 19 Si 0.905 3.095 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.274 1.274 23 C 0.120 3.880 24 S 0.246 5.754 25 H 0.078 0.922 26 H 0.076 0.924 27 H 0.081 0.919 28 H 0.069 0.931 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.412 0.588 32 H 0.069 0.931 33 H 0.058 0.942 34 H 0.079 0.921 35 H 0.079 0.921 36 H 0.383 0.617 37 H 0.272 0.728 38 H 0.069 0.931 39 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.942 13.032 0.376 15.266 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.313 4.313 3 N -0.166 5.166 4 C -0.146 4.146 5 C -0.128 4.128 6 C -0.189 4.189 7 N -0.293 5.293 8 C 0.407 3.593 9 O -0.444 6.444 10 N -0.352 5.352 11 C -0.026 4.026 12 C -0.153 4.153 13 C 0.209 3.791 14 O -0.393 6.393 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.532 5.532 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.210 1.210 22 H -0.200 1.200 23 C -0.001 4.001 24 S 0.497 5.503 25 H 0.097 0.903 26 H 0.094 0.906 27 H 0.100 0.900 28 H 0.088 0.912 29 H 0.082 0.918 30 H 0.094 0.906 31 H 0.250 0.750 32 H 0.087 0.913 33 H 0.076 0.924 34 H 0.098 0.902 35 H 0.098 0.902 36 H 0.234 0.766 37 H 0.082 0.918 38 H 0.088 0.912 39 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges -8.870 12.238 0.405 15.120 hybrid contribution 1.090 -0.287 0.403 1.197 sum -7.780 11.951 0.808 14.283 Atomic orbital electron populations 1.20261 0.85726 1.03501 1.03228 1.27106 1.02007 0.94129 1.08063 1.66070 1.03223 1.32287 1.15029 1.19866 0.90986 0.92101 1.11616 1.20162 0.95332 0.94913 1.02369 1.23316 0.90168 0.95964 1.09429 1.42097 1.04327 1.07038 1.75857 1.15546 0.83557 0.81174 0.79048 1.90852 1.42102 1.53270 1.58133 1.47967 1.02160 1.10752 1.74362 1.22438 0.85912 0.93683 1.00617 1.22770 0.97060 0.95516 0.99927 1.19495 0.86284 0.91258 0.82076 1.86110 1.76530 1.46055 1.30611 1.21428 1.34531 0.90783 1.11070 0.91479 1.25074 0.93737 0.99126 0.95272 1.69676 1.36946 1.20368 1.26188 0.86437 0.79284 0.80422 0.80655 1.19989 1.21016 1.19951 1.23064 0.98615 0.76067 1.02366 1.85051 0.91852 1.05339 1.68099 0.90294 0.90553 0.90022 0.91195 0.91810 0.90583 0.75005 0.91320 0.92351 0.90238 0.90243 0.76633 0.91817 0.91242 0.91372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.63 10.46 36.01 0.38 -0.25 16 2 C -0.03 -0.47 7.38 -13.50 -0.10 -0.57 16 3 N -0.45 -6.64 10.53 -7.91 -0.08 -6.72 16 4 C -0.01 -0.14 6.77 -83.95 -0.57 -0.71 16 5 C -0.07 -0.72 10.07 36.00 0.36 -0.35 16 6 C 0.03 0.49 7.18 -15.26 -0.11 0.38 16 7 N -0.64 -9.88 5.36 -14.96 -0.08 -9.96 16 8 C 0.71 13.55 8.46 -86.92 -0.73 12.82 16 9 O -0.57 -12.51 14.30 5.28 0.08 -12.43 16 10 N -0.62 -11.94 3.32 -176.10 -0.59 -12.52 16 11 C 0.10 1.54 6.58 -2.41 -0.02 1.52 16 12 C -0.11 -2.11 6.24 -24.46 -0.15 -2.26 16 13 C 0.25 5.70 0.85 -89.93 -0.08 5.62 16 14 O -0.58 -13.94 13.07 -35.23 -0.46 -14.40 16 15 C -0.54 -13.53 8.13 -34.44 -0.28 -13.81 16 16 H 0.07 1.65 7.78 -52.49 -0.41 1.24 16 17 C 0.07 1.81 5.28 -17.82 -0.09 1.71 16 18 N -0.89 -23.03 10.96 55.43 0.61 -22.42 16 19 Si 0.90 19.90 29.54 -169.99 -5.02 14.88 16 20 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 21 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 22 H -0.27 -6.00 7.11 56.52 0.40 -5.60 16 23 C 0.12 2.76 5.23 -3.06 -0.02 2.75 16 24 S 0.25 3.75 20.42 -107.50 -2.20 1.55 16 25 H 0.08 0.64 8.14 -51.93 -0.42 0.21 16 26 H 0.08 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 29 H 0.06 0.57 7.22 -51.93 -0.37 0.19 16 30 H 0.08 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.41 5.05 6.10 -40.82 -0.25 4.80 16 32 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 33 H 0.06 0.72 7.29 -51.93 -0.38 0.34 16 34 H 0.08 1.41 8.04 -51.93 -0.42 0.99 16 35 H 0.08 1.38 8.14 -51.93 -0.42 0.95 16 36 H 0.38 9.42 7.45 45.56 0.34 9.76 16 37 H 0.27 6.78 8.31 -40.82 -0.34 6.44 16 38 H 0.07 1.75 7.81 -51.93 -0.41 1.35 16 39 H 0.07 1.72 7.92 -51.93 -0.41 1.31 16 LS Contribution 336.36 15.07 5.07 5.07 Total: -1.00 -29.49 336.36 -8.48 -37.97 By element: Atomic # 1 Polarization: 16.54 SS G_CDS: -4.40 Total: 12.14 kcal Atomic # 6 Polarization: 8.25 SS G_CDS: -1.41 Total: 6.84 kcal Atomic # 7 Polarization: -51.49 SS G_CDS: -0.14 Total: -51.63 kcal Atomic # 8 Polarization: -26.44 SS G_CDS: -0.39 Total: -26.83 kcal Atomic # 14 Polarization: 19.90 SS G_CDS: -5.02 Total: 14.88 kcal Atomic # 16 Polarization: 3.75 SS G_CDS: -2.20 Total: 1.55 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -29.49 -8.48 -37.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365045560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 5.078 kcal (2) G-P(sol) polarization free energy of solvation -29.486 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.968 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds