Wall clock time and date at job start Tue Mar 31 2020 09:44:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50702 * 1 3 3 N 1.28914 * 124.84336 * 2 1 4 4 C 1.31892 * 117.18912 * 179.73482 * 3 2 1 5 5 C 1.50693 * 122.84695 * 180.02562 * 4 3 2 6 6 C 1.34339 * 114.30078 * 359.97438 * 4 3 2 7 7 N 1.39863 * 126.06428 * 180.02562 * 6 4 3 8 8 C 1.34778 * 119.99982 * 180.02562 * 7 6 4 9 9 O 1.21602 * 120.00123 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00158 * 179.97438 * 8 7 6 11 11 C 1.47426 * 125.64753 * 359.69506 * 10 8 7 12 12 C 1.55126 * 104.71989 * 155.81367 * 11 10 8 13 13 C 1.55160 * 101.48865 * 37.29724 * 12 11 10 14 14 O 1.42895 * 110.71830 * 82.69121 * 13 12 11 15 15 C 1.50700 * 110.87415 * 205.89817 * 13 12 11 16 16 H 1.07997 * 119.99820 * 355.06021 * 15 13 12 17 17 C 1.37873 * 120.00049 * 175.06557 * 15 13 12 18 18 N 1.31516 * 120.00041 * 359.97438 * 17 15 13 19 19 Si 1.86802 * 120.00061 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.46907 * 59.99884 * 19 17 15 21 21 H 1.48496 * 109.47155 * 179.97438 * 19 17 15 22 22 H 1.48494 * 109.46996 * 299.99948 * 19 17 15 23 23 C 1.47020 * 125.64686 * 179.97438 * 10 8 7 24 24 S 1.70951 * 124.84084 * 179.69591 * 2 1 3 25 25 H 1.09000 * 109.47294 * 89.99788 * 1 2 3 26 26 H 1.08996 * 109.47066 * 210.00342 * 1 2 3 27 27 H 1.09001 * 109.46952 * 330.00147 * 1 2 3 28 28 H 1.08998 * 109.47535 * 90.02455 * 5 4 3 29 29 H 1.09006 * 109.46823 * 210.02348 * 5 4 3 30 30 H 1.09001 * 109.47477 * 330.02097 * 5 4 3 31 31 H 0.96995 * 120.00140 * 0.02562 * 7 6 4 32 32 H 1.08995 * 110.36446 * 274.74623 * 11 10 8 33 33 H 1.09000 * 110.36515 * 37.06746 * 11 10 8 34 34 H 1.08999 * 111.19784 * 279.18905 * 12 11 10 35 35 H 1.08998 * 110.90694 * 155.27585 * 12 11 10 36 36 H 0.96700 * 113.99949 * 185.02331 * 14 13 12 37 37 H 0.97001 * 119.99909 * 179.97438 * 18 17 15 38 38 H 1.08998 * 109.88643 * 300.44161 * 23 10 8 39 39 H 1.09002 * 109.88136 * 61.45600 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2436 1.0580 0.0000 4 6 3.5507 0.8824 0.0054 5 6 4.5294 2.0282 0.0067 6 6 3.9355 -0.4047 0.0108 7 7 5.2546 -0.8697 0.0177 8 6 5.5021 -2.1945 0.0221 9 8 4.5786 -2.9856 0.0197 10 7 6.7732 -2.6426 0.0282 11 6 7.9818 -1.7985 0.0243 12 6 9.0874 -2.6901 0.6482 13 6 8.7267 -4.0824 0.0660 14 8 9.2574 -4.2319 -1.2523 15 6 9.2211 -5.1853 0.9661 16 1 9.8165 -4.9470 1.8350 17 6 8.9134 -6.4985 0.6802 18 7 8.1880 -6.7886 -0.3778 19 14 9.5268 -7.8657 1.7955 20 1 8.9937 -7.6626 3.1667 21 1 9.0626 -9.1761 1.2736 22 1 11.0111 -7.8451 1.8334 23 6 7.1840 -4.0543 0.0341 24 16 2.4837 -1.4031 0.0074 25 1 -0.3634 0.0000 -1.0276 26 1 -0.3633 -0.8899 0.5139 27 1 -0.3633 0.8900 0.5138 28 1 4.7618 2.3065 1.0346 29 1 5.4440 1.7254 -0.5034 30 1 4.0905 2.8815 -0.5104 31 1 5.9913 -0.2387 0.0193 32 1 8.2465 -1.5198 -0.9956 33 1 7.8246 -0.9081 0.6332 34 1 9.0238 -2.6933 1.7363 35 1 10.0761 -2.3725 0.3172 36 1 8.9960 -5.0532 -1.6907 37 1 7.9718 -7.7125 -0.5791 38 1 6.7857 -4.5527 0.9178 39 1 6.8207 -4.5498 -0.8662 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001365045560.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:44:59 Heat of formation + Delta-G solvation = -54.372536 kcal Electronic energy + Delta-G solvation = -23668.686818 eV Core-core repulsion = 20123.247371 eV Total energy + Delta-G solvation = -3545.439447 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.80149 -40.72058 -39.32028 -36.33166 -36.16024 -34.24521 -33.25199 -31.74913 -30.07197 -29.68419 -28.11487 -26.62404 -24.47128 -23.64755 -21.84991 -21.54467 -20.97731 -19.40895 -19.07718 -18.00449 -17.85707 -17.28490 -17.00426 -16.39553 -16.23459 -16.07137 -15.09663 -14.89580 -14.81315 -14.77097 -14.22237 -14.17663 -14.03190 -13.54255 -13.48114 -13.39219 -13.02764 -13.01454 -12.84658 -12.59584 -12.38771 -12.33843 -12.27696 -12.17336 -12.09011 -11.64241 -11.20081 -10.66800 -10.42468 -10.33539 -10.09439 -9.71160 -8.92637 -8.27929 -6.43577 -0.24920 0.15705 0.80593 1.36045 1.43392 1.44243 1.51246 1.59577 2.03065 2.36853 2.75482 2.99179 3.26977 3.73181 3.94180 4.01773 4.10190 4.14596 4.30815 4.51348 4.57373 4.61881 4.65947 4.71937 4.77399 4.89799 4.99001 5.04828 5.06978 5.10347 5.14293 5.31006 5.40594 5.44043 5.72169 5.76434 6.05057 6.60318 6.69368 6.79478 7.14777 7.25621 7.33625 8.77866 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024223 B = 0.003446 C = 0.003152 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1155.654290 B = 8123.655685 C = 8881.598645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.010 4.010 3 N -0.472 5.472 4 C 0.004 3.996 5 C -0.071 4.071 6 C -0.001 4.001 7 N -0.625 5.625 8 C 0.703 3.297 9 O -0.604 6.604 10 N -0.622 5.622 11 C 0.100 3.900 12 C -0.109 4.109 13 C 0.234 3.766 14 O -0.586 6.586 15 C -0.558 4.558 16 H 0.068 0.932 17 C 0.028 3.972 18 N -0.914 5.914 19 Si 0.961 3.039 20 H -0.273 1.273 21 H -0.285 1.285 22 H -0.268 1.268 23 C 0.141 3.859 24 S 0.193 5.807 25 H 0.096 0.904 26 H 0.092 0.908 27 H 0.094 0.906 28 H 0.085 0.915 29 H 0.082 0.918 30 H 0.083 0.917 31 H 0.427 0.573 32 H 0.079 0.921 33 H 0.105 0.895 34 H 0.086 0.914 35 H 0.094 0.906 36 H 0.376 0.624 37 H 0.270 0.730 38 H 0.035 0.965 39 H 0.034 0.966 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.893 15.488 1.001 17.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C -0.289 4.289 3 N -0.187 5.187 4 C -0.132 4.132 5 C -0.130 4.130 6 C -0.219 4.219 7 N -0.276 5.276 8 C 0.404 3.596 9 O -0.484 6.484 10 N -0.357 5.357 11 C -0.022 4.022 12 C -0.147 4.147 13 C 0.194 3.806 14 O -0.394 6.394 15 C -0.596 4.596 16 H 0.086 0.914 17 C -0.174 4.174 18 N -0.553 5.553 19 Si 0.786 3.214 20 H -0.198 1.198 21 H -0.211 1.211 22 H -0.193 1.193 23 C 0.018 3.982 24 S 0.445 5.555 25 H 0.115 0.885 26 H 0.111 0.889 27 H 0.113 0.887 28 H 0.104 0.896 29 H 0.100 0.900 30 H 0.102 0.898 31 H 0.269 0.731 32 H 0.097 0.903 33 H 0.123 0.877 34 H 0.104 0.896 35 H 0.112 0.888 36 H 0.225 0.775 37 H 0.079 0.921 38 H 0.054 0.946 39 H 0.052 0.948 Dipole moment (debyes) X Y Z Total from point charges -8.801 14.765 1.035 17.220 hybrid contribution 0.944 -0.958 0.200 1.360 sum -7.857 13.807 1.235 15.934 Atomic orbital electron populations 1.20500 0.82820 1.04921 1.04773 1.27771 1.03483 0.92621 1.05014 1.66220 1.03621 1.32395 1.16513 1.20471 0.91443 0.92555 1.08702 1.20346 0.95137 0.93748 1.03748 1.23364 0.89775 0.96249 1.12560 1.41654 1.04978 1.05601 1.75373 1.15643 0.82927 0.82221 0.78803 1.90832 1.43246 1.54810 1.59537 1.47836 1.03371 1.09740 1.74730 1.22624 0.83434 0.94065 1.02039 1.22762 0.98726 0.92984 1.00248 1.19705 0.85974 0.93516 0.81436 1.86101 1.76621 1.45525 1.31142 1.21793 1.34510 0.91810 1.11519 0.91371 1.25785 0.93948 1.01208 0.96429 1.69787 1.37735 1.20456 1.27355 0.85556 0.78927 0.77890 0.78977 1.19827 1.21082 1.19320 1.22495 0.98768 0.77982 0.98969 1.85224 0.93568 1.07621 1.69071 0.88539 0.88937 0.88722 0.89646 0.89966 0.89800 0.73132 0.90278 0.87667 0.89592 0.88789 0.77519 0.92061 0.94618 0.94797 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.14 10.46 71.24 0.75 -0.40 16 2 C -0.01 -0.26 7.38 88.54 0.65 0.39 16 3 N -0.47 -12.94 10.53 -178.94 -1.88 -14.83 16 4 C 0.00 0.11 6.77 41.66 0.28 0.39 16 5 C -0.07 -1.24 10.07 71.23 0.72 -0.53 16 6 C 0.00 -0.03 7.18 82.52 0.59 0.56 16 7 N -0.63 -18.29 5.36 -319.51 -1.71 -20.01 16 8 C 0.70 27.01 8.46 179.05 1.51 28.53 16 9 O -0.60 -27.62 14.30 -4.04 -0.06 -27.68 16 10 N -0.62 -23.90 3.32 -829.30 -2.76 -26.65 16 11 C 0.10 2.93 6.58 86.93 0.57 3.50 16 12 C -0.11 -3.83 6.24 32.06 0.20 -3.63 16 13 C 0.23 10.78 0.85 -10.35 -0.01 10.77 16 14 O -0.59 -28.30 13.07 -148.98 -1.95 -30.24 16 15 C -0.56 -28.27 8.13 25.60 0.21 -28.06 16 16 H 0.07 3.35 7.78 -2.91 -0.02 3.33 16 17 C 0.03 1.41 5.28 84.65 0.45 1.86 16 18 N -0.91 -48.68 10.96 21.45 0.24 -48.44 16 19 Si 0.96 41.19 29.54 68.60 2.03 43.22 16 20 H -0.27 -11.55 7.11 99.48 0.71 -10.84 16 21 H -0.29 -12.15 7.11 99.48 0.71 -11.45 16 22 H -0.27 -11.16 7.11 99.48 0.71 -10.46 16 23 C 0.14 6.71 5.23 86.73 0.45 7.17 16 24 S 0.19 5.92 20.42 -56.49 -1.15 4.76 16 25 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 26 H 0.09 1.23 8.14 -2.39 -0.02 1.21 16 27 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 28 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 29 H 0.08 1.15 7.22 -2.38 -0.02 1.13 16 30 H 0.08 1.38 8.14 -2.39 -0.02 1.36 16 31 H 0.43 9.22 6.10 -92.71 -0.57 8.66 16 32 H 0.08 2.20 8.14 -2.39 -0.02 2.18 16 33 H 0.11 2.14 7.29 -2.39 -0.02 2.12 16 34 H 0.09 2.88 8.04 -2.39 -0.02 2.86 16 35 H 0.09 3.02 8.14 -2.39 -0.02 3.00 16 36 H 0.38 19.11 7.45 -74.06 -0.55 18.56 16 37 H 0.27 13.89 8.31 -92.71 -0.77 13.12 16 38 H 0.04 1.89 7.81 -2.39 -0.02 1.87 16 39 H 0.03 1.81 7.92 -2.39 -0.02 1.79 16 Total: -1.00 -66.10 336.36 -0.89 -67.00 By element: Atomic # 1 Polarization: 32.33 SS G_CDS: -0.02 Total: 32.32 kcal Atomic # 6 Polarization: 14.18 SS G_CDS: 6.38 Total: 20.55 kcal Atomic # 7 Polarization: -103.81 SS G_CDS: -6.12 Total: -109.93 kcal Atomic # 8 Polarization: -55.92 SS G_CDS: -2.01 Total: -57.92 kcal Atomic # 14 Polarization: 41.19 SS G_CDS: 2.03 Total: 43.22 kcal Atomic # 16 Polarization: 5.92 SS G_CDS: -1.15 Total: 4.76 kcal Total: -66.10 -0.89 -67.00 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001365045560.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.623 kcal (2) G-P(sol) polarization free energy of solvation -66.103 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -53.479 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.893 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.996 kcal (6) G-S(sol) free energy of system = (1) + (5) -54.373 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds