Wall clock time and date at job start Tue Mar 31 2020 09:57:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47376 * 2 1 4 4 N 1.31886 * 122.85021 * 90.02413 * 3 2 1 5 5 C 1.28911 * 117.19120 * 179.97438 * 4 3 2 6 6 S 1.70955 * 110.31055 * 0.02562 * 5 4 3 7 7 C 1.34344 * 122.84468 * 269.73120 * 3 2 1 8 8 N 1.39859 * 126.06857 * 0.02562 * 7 3 2 9 9 C 1.34770 * 119.99842 * 179.97438 * 8 7 3 10 10 O 1.21602 * 120.00427 * 359.97438 * 9 8 7 11 11 N 1.34787 * 120.00244 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.64458 * 359.69585 * 11 9 8 13 13 C 1.54332 * 107.26576 * 178.84485 * 12 11 9 14 14 C 1.55164 * 103.02018 * 338.14542 * 13 12 11 15 15 O 1.42900 * 110.99961 * 277.22694 * 14 13 12 16 16 C 1.50701 * 111.03631 * 153.39566 * 14 13 12 17 17 H 1.07997 * 119.99569 * 272.60254 * 16 14 13 18 18 C 1.37877 * 120.00163 * 92.60809 * 16 14 13 19 19 N 1.31510 * 119.99791 * 173.51823 * 18 16 14 20 20 Si 1.86797 * 119.99950 * 353.51452 * 18 16 14 21 21 H 1.48504 * 109.47202 * 87.32338 * 20 18 16 22 22 H 1.48493 * 109.47258 * 207.32171 * 20 18 16 23 23 H 1.48498 * 109.47425 * 327.32357 * 20 18 16 24 24 C 1.47423 * 125.64895 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47411 * 59.99573 * 1 2 3 27 27 H 1.09008 * 109.46563 * 300.00035 * 1 2 3 28 28 H 1.09007 * 109.47506 * 120.00189 * 2 1 3 29 29 H 1.09002 * 109.46927 * 239.99710 * 2 1 3 30 30 H 1.07999 * 124.84160 * 180.02562 * 5 4 3 31 31 H 0.96998 * 120.00422 * 359.97438 * 8 7 3 32 32 H 1.08995 * 109.87902 * 298.39241 * 12 11 9 33 33 H 1.09004 * 109.88139 * 59.56027 * 12 11 9 34 34 H 1.08989 * 110.85404 * 219.67379 * 13 12 11 35 35 H 1.09001 * 110.51175 * 96.45038 * 13 12 11 36 36 H 0.96702 * 113.99669 * 168.39666 * 15 14 13 37 37 H 0.97003 * 120.00041 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.36758 * 322.93436 * 24 11 9 39 39 H 1.08993 * 110.36576 * 85.14443 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2713 2.0951 1.1080 5 6 2.6994 3.3044 0.9808 6 16 2.8428 3.7124 -0.6731 7 6 2.2803 2.1060 -1.1287 8 7 2.1178 1.6297 -2.4336 9 6 2.4043 2.4264 -3.4822 10 8 2.8035 3.5594 -3.2939 11 7 2.2482 1.9673 -4.7398 12 6 1.7819 0.6229 -5.1095 13 6 1.7338 0.5624 -6.6508 14 6 1.6429 2.0573 -7.0566 15 8 0.2950 2.5264 -6.9848 16 6 2.2167 2.2802 -8.4322 17 1 3.2727 2.4719 -8.5521 18 6 1.3935 2.2396 -9.5375 19 7 1.8670 2.5591 -10.7221 20 14 -0.3943 1.7308 -9.3523 21 1 -1.2165 2.9225 -9.0218 22 1 -0.8741 1.1361 -10.6256 23 1 -0.5137 0.7294 -8.2623 24 6 2.5233 2.7278 -5.9724 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.9340 3.9654 1.8021 31 1 1.7990 0.7260 -2.5839 32 1 2.4747 -0.1274 -4.7285 33 1 0.7854 0.4512 -4.7023 34 1 0.8538 0.0164 -6.9904 35 1 2.6446 0.1108 -7.0440 36 1 0.2086 3.4870 -7.0548 37 1 1.2879 2.5302 -11.4998 38 1 2.2388 3.7723 -5.8453 39 1 3.5779 2.6523 -6.2373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465953399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:59 Heat of formation + Delta-G solvation = -26.449782 kcal Electronic energy + Delta-G solvation = -23880.053702 eV Core-core repulsion = 20335.825077 eV Total energy + Delta-G solvation = -3544.228625 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.67936 -39.69839 -38.08464 -35.11980 -34.97389 -33.31887 -32.47015 -30.66709 -28.82470 -28.23224 -25.79073 -24.78370 -23.38821 -22.89926 -20.67131 -20.11074 -19.79687 -18.22861 -17.70148 -17.47363 -16.62251 -16.06264 -15.52148 -15.20411 -14.97763 -14.70120 -14.24812 -14.03602 -13.91116 -13.81424 -13.73182 -12.82815 -12.64357 -12.50816 -12.13216 -12.06800 -11.90747 -11.73273 -11.40793 -11.24358 -11.18207 -11.01889 -10.63970 -10.51070 -10.39596 -10.31454 -9.42982 -9.34162 -9.03098 -8.81318 -8.64336 -8.44898 -7.99573 -6.28139 -4.41476 0.76218 1.14049 1.82669 2.51572 2.65837 3.18393 3.38475 3.45696 3.60829 3.85876 4.21989 4.40957 4.78008 4.88817 4.94446 4.97789 5.11595 5.15189 5.19275 5.36311 5.40009 5.57754 5.64983 5.66417 5.81397 5.88414 5.90807 6.04066 6.21798 6.26314 6.32038 6.44978 6.56797 6.83213 6.92188 7.34100 7.74295 7.78813 8.02220 8.34375 8.50379 8.71644 9.32432 10.80515 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.003589 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.956567 B = 7799.353695 C = 8405.248817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.041 4.041 3 C -0.007 4.007 4 N -0.445 5.445 5 C -0.059 4.059 6 S 0.241 5.759 7 C 0.035 3.965 8 N -0.642 5.642 9 C 0.710 3.290 10 O -0.567 6.567 11 N -0.616 5.616 12 C 0.094 3.906 13 C -0.119 4.119 14 C 0.221 3.779 15 O -0.559 6.559 16 C -0.555 4.555 17 H 0.082 0.918 18 C 0.076 3.924 19 N -0.885 5.885 20 Si 0.952 3.048 21 H -0.293 1.293 22 H -0.325 1.325 23 H -0.270 1.270 24 C 0.106 3.894 25 H 0.060 0.940 26 H 0.052 0.948 27 H 0.059 0.941 28 H 0.082 0.918 29 H 0.068 0.932 30 H 0.194 0.806 31 H 0.413 0.587 32 H 0.059 0.941 33 H 0.062 0.938 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.372 0.628 37 H 0.268 0.732 38 H 0.074 0.926 39 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.770 -3.785 18.954 19.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.081 4.081 3 C -0.143 4.143 4 N -0.158 5.158 5 C -0.357 4.357 6 S 0.491 5.509 7 C -0.185 4.185 8 N -0.290 5.290 9 C 0.412 3.588 10 O -0.445 6.445 11 N -0.351 5.351 12 C -0.029 4.029 13 C -0.157 4.157 14 C 0.180 3.820 15 O -0.367 6.367 16 C -0.592 4.592 17 H 0.100 0.900 18 C -0.130 4.130 19 N -0.519 5.519 20 Si 0.787 3.213 21 H -0.220 1.220 22 H -0.257 1.257 23 H -0.196 1.196 24 C -0.015 4.015 25 H 0.080 0.920 26 H 0.071 0.929 27 H 0.078 0.922 28 H 0.100 0.900 29 H 0.086 0.914 30 H 0.211 0.789 31 H 0.252 0.748 32 H 0.078 0.922 33 H 0.080 0.920 34 H 0.101 0.899 35 H 0.106 0.894 36 H 0.221 0.779 37 H 0.077 0.923 38 H 0.092 0.908 39 H 0.094 0.906 Dipole moment (debyes) X Y Z Total from point charges -0.343 -2.843 18.932 19.147 hybrid contribution -1.178 -0.977 -0.109 1.534 sum -1.520 -3.820 18.822 19.266 Atomic orbital electron populations 1.21752 0.94549 1.01805 1.02361 1.19946 0.95985 0.89320 1.02828 1.19943 1.09677 0.99387 0.85324 1.66128 1.12957 1.06392 1.30367 1.28392 1.07273 0.97004 1.02999 1.85044 1.60139 1.07825 0.97911 1.23340 1.07903 0.99401 0.87873 1.42009 1.68323 1.17422 1.01258 1.15461 0.79414 0.84101 0.79853 1.90861 1.53227 1.17728 1.82675 1.47678 1.67600 1.16196 1.03618 1.22215 0.98307 0.83180 0.99184 1.22976 1.03431 0.99114 0.90211 1.20249 0.78723 0.89735 0.93259 1.86118 1.29170 1.26950 1.94453 1.21067 0.97226 1.52834 0.88073 0.89956 1.25112 1.00385 0.92784 0.94695 1.69959 1.37454 1.45079 0.99434 0.85640 0.82515 0.79126 0.74010 1.22016 1.25688 1.19631 1.23164 1.01184 0.96019 0.81182 0.92048 0.92857 0.92194 0.89974 0.91351 0.78926 0.74839 0.92241 0.92014 0.89856 0.89354 0.77925 0.92270 0.90760 0.90633 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.32 9.89 37.16 0.37 -0.96 16 2 C -0.04 -0.40 6.12 -27.88 -0.17 -0.57 16 3 C -0.01 -0.09 6.02 -83.94 -0.51 -0.59 16 4 N -0.45 -5.81 10.53 -11.75 -0.12 -5.94 16 5 C -0.06 -0.66 12.21 51.54 0.63 -0.03 16 6 S 0.24 3.15 20.46 -107.50 -2.20 0.95 16 7 C 0.03 0.48 7.18 -15.26 -0.11 0.37 16 8 N -0.64 -8.65 5.36 -14.96 -0.08 -8.73 16 9 C 0.71 11.78 8.46 -86.91 -0.73 11.04 16 10 O -0.57 -10.79 14.23 5.28 0.08 -10.71 16 11 N -0.62 -10.17 3.33 -176.22 -0.59 -10.75 16 12 C 0.09 1.35 6.15 -3.06 -0.02 1.33 16 13 C -0.12 -2.10 5.90 -24.89 -0.15 -2.25 16 14 C 0.22 4.51 0.70 -89.61 -0.06 4.45 16 15 O -0.56 -11.39 8.52 -35.23 -0.30 -11.69 16 16 C -0.55 -13.87 8.89 -34.44 -0.31 -14.17 16 17 H 0.08 2.25 8.00 -52.49 -0.42 1.83 16 18 C 0.08 2.01 5.46 -17.82 -0.10 1.92 16 19 N -0.88 -25.30 13.96 55.43 0.77 -24.52 16 20 Si 0.95 22.33 24.93 -169.99 -4.24 18.09 16 21 H -0.29 -6.81 7.11 56.52 0.40 -6.41 16 22 H -0.33 -7.91 7.11 56.52 0.40 -7.50 16 23 H -0.27 -6.13 5.42 56.52 0.31 -5.82 16 24 C 0.11 1.99 6.07 -2.52 -0.02 1.97 16 25 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.05 0.51 8.14 -51.93 -0.42 0.09 16 27 H 0.06 0.58 8.14 -51.92 -0.42 0.16 16 28 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.57 7.20 -51.93 -0.37 0.20 16 30 H 0.19 1.51 8.06 -52.49 -0.42 1.09 16 31 H 0.41 4.52 6.60 -40.82 -0.27 4.25 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 33 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.08 1.52 6.65 -51.94 -0.35 1.17 16 35 H 0.09 1.53 8.03 -51.93 -0.42 1.11 16 36 H 0.37 6.83 8.99 45.56 0.41 7.24 16 37 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 38 H 0.07 1.42 8.02 -51.93 -0.42 1.00 16 39 H 0.08 1.44 7.99 -51.93 -0.41 1.03 16 LS Contribution 330.70 15.07 4.98 4.98 Total: -1.00 -31.17 330.70 -7.30 -38.47 By element: Atomic # 1 Polarization: 11.79 SS G_CDS: -4.44 Total: 7.35 kcal Atomic # 6 Polarization: 3.67 SS G_CDS: -1.17 Total: 2.50 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.02 Total: -49.94 kcal Atomic # 8 Polarization: -22.18 SS G_CDS: -0.23 Total: -22.40 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -4.24 Total: 18.09 kcal Atomic # 16 Polarization: 3.15 SS G_CDS: -2.20 Total: 0.95 kcal Total LS contribution 4.98 Total: 4.98 kcal Total: -31.17 -7.30 -38.47 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465953399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.023 kcal (2) G-P(sol) polarization free energy of solvation -31.170 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.147 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.303 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -26.450 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds