Wall clock time and date at job start Tue Mar 31 2020 09:57:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.50701 * 109.47376 * 2 1 4 4 N 1.31886 * 122.85021 * 90.02413 * 3 2 1 5 5 C 1.28911 * 117.19120 * 179.97438 * 4 3 2 6 6 S 1.70955 * 110.31055 * 0.02562 * 5 4 3 7 7 C 1.34344 * 122.84468 * 269.73120 * 3 2 1 8 8 N 1.39859 * 126.06857 * 0.02562 * 7 3 2 9 9 C 1.34770 * 119.99842 * 179.97438 * 8 7 3 10 10 O 1.21602 * 120.00427 * 359.97438 * 9 8 7 11 11 N 1.34787 * 120.00244 * 179.97438 * 9 8 7 12 12 C 1.47022 * 125.64458 * 359.69585 * 11 9 8 13 13 C 1.54332 * 107.26576 * 178.84485 * 12 11 9 14 14 C 1.55164 * 103.02018 * 338.14542 * 13 12 11 15 15 O 1.42900 * 110.99961 * 277.22694 * 14 13 12 16 16 C 1.50701 * 111.03631 * 153.39566 * 14 13 12 17 17 H 1.07997 * 119.99569 * 272.60254 * 16 14 13 18 18 C 1.37877 * 120.00163 * 92.60809 * 16 14 13 19 19 N 1.31510 * 119.99791 * 173.51823 * 18 16 14 20 20 Si 1.86797 * 119.99950 * 353.51452 * 18 16 14 21 21 H 1.48504 * 109.47202 * 87.32338 * 20 18 16 22 22 H 1.48493 * 109.47258 * 207.32171 * 20 18 16 23 23 H 1.48498 * 109.47425 * 327.32357 * 20 18 16 24 24 C 1.47423 * 125.64895 * 180.02562 * 11 9 8 25 25 H 1.09001 * 109.47182 * 180.02562 * 1 2 3 26 26 H 1.08998 * 109.47411 * 59.99573 * 1 2 3 27 27 H 1.09008 * 109.46563 * 300.00035 * 1 2 3 28 28 H 1.09007 * 109.47506 * 120.00189 * 2 1 3 29 29 H 1.09002 * 109.46927 * 239.99710 * 2 1 3 30 30 H 1.07999 * 124.84160 * 180.02562 * 5 4 3 31 31 H 0.96998 * 120.00422 * 359.97438 * 8 7 3 32 32 H 1.08995 * 109.87902 * 298.39241 * 12 11 9 33 33 H 1.09004 * 109.88139 * 59.56027 * 12 11 9 34 34 H 1.08989 * 110.85404 * 219.67379 * 13 12 11 35 35 H 1.09001 * 110.51175 * 96.45038 * 13 12 11 36 36 H 0.96702 * 113.99669 * 168.39666 * 15 14 13 37 37 H 0.97003 * 120.00041 * 179.97438 * 19 18 16 38 38 H 1.09004 * 110.36758 * 322.93436 * 24 11 9 39 39 H 1.08993 * 110.36576 * 85.14443 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 7 2.2713 2.0951 1.1080 5 6 2.6994 3.3044 0.9808 6 16 2.8428 3.7124 -0.6731 7 6 2.2803 2.1060 -1.1287 8 7 2.1178 1.6297 -2.4336 9 6 2.4043 2.4264 -3.4822 10 8 2.8035 3.5594 -3.2939 11 7 2.2482 1.9673 -4.7398 12 6 1.7819 0.6229 -5.1095 13 6 1.7338 0.5624 -6.6508 14 6 1.6429 2.0573 -7.0566 15 8 0.2950 2.5264 -6.9848 16 6 2.2167 2.2802 -8.4322 17 1 3.2727 2.4719 -8.5521 18 6 1.3935 2.2396 -9.5375 19 7 1.8670 2.5591 -10.7221 20 14 -0.3943 1.7308 -9.3523 21 1 -1.2165 2.9225 -9.0218 22 1 -0.8741 1.1361 -10.6256 23 1 -0.5137 0.7294 -8.2623 24 6 2.5233 2.7278 -5.9724 25 1 -0.3633 -1.0277 0.0005 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5139 0.8901 28 1 1.8934 -0.5139 0.8900 29 1 1.8933 -0.5139 -0.8900 30 1 2.9340 3.9654 1.8021 31 1 1.7990 0.7260 -2.5839 32 1 2.4747 -0.1274 -4.7285 33 1 0.7854 0.4512 -4.7023 34 1 0.8538 0.0164 -6.9904 35 1 2.6446 0.1108 -7.0440 36 1 0.2086 3.4870 -7.0548 37 1 1.2879 2.5302 -11.4998 38 1 2.2388 3.7723 -5.8453 39 1 3.5779 2.6523 -6.2373 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465953399.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:57:58 Heat of formation + Delta-G solvation = -50.117820 kcal Electronic energy + Delta-G solvation = -23881.080026 eV Core-core repulsion = 20335.825077 eV Total energy + Delta-G solvation = -3545.254948 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.86580 -40.76205 -39.52105 -36.47771 -36.22452 -34.46119 -34.14044 -32.09590 -30.12430 -29.43197 -27.25336 -26.01467 -24.28810 -24.14970 -21.88006 -21.60942 -20.91388 -19.63407 -19.19264 -18.53089 -17.73314 -17.33633 -17.06621 -16.73674 -16.47375 -15.90507 -15.42399 -15.14985 -14.96593 -14.91602 -14.63070 -14.56035 -14.11713 -13.84930 -13.43461 -13.27502 -13.24267 -12.86130 -12.78177 -12.40883 -12.33644 -12.23812 -12.13546 -11.98524 -11.86517 -11.62489 -11.25392 -10.64913 -10.44098 -10.42213 -10.05847 -9.72764 -9.03144 -8.33877 -6.48043 -0.20807 0.19102 0.82844 1.36766 1.51799 1.54632 1.62593 1.74997 2.04203 2.45512 2.71239 2.97889 3.39449 3.46409 3.75339 3.95271 4.01880 4.16786 4.21435 4.35588 4.38383 4.44756 4.53892 4.66783 4.78391 4.86253 4.89746 5.02419 5.04777 5.14866 5.18024 5.26511 5.34180 5.39396 5.51235 5.72226 6.04775 6.56593 6.60845 6.80131 6.90081 7.11706 7.30229 8.78976 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.025897 B = 0.003589 C = 0.003330 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1080.956567 B = 7799.353695 C = 8405.248817 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.043 4.043 3 C 0.002 3.998 4 N -0.468 5.468 5 C -0.033 4.033 6 S 0.207 5.793 7 C 0.007 3.993 8 N -0.627 5.627 9 C 0.709 3.291 10 O -0.598 6.598 11 N -0.617 5.617 12 C 0.099 3.901 13 C -0.118 4.118 14 C 0.217 3.783 15 O -0.559 6.559 16 C -0.548 4.548 17 H 0.046 0.954 18 C 0.026 3.974 19 N -0.937 5.937 20 Si 1.010 2.990 21 H -0.288 1.288 22 H -0.339 1.339 23 H -0.252 1.252 24 C 0.117 3.883 25 H 0.082 0.918 26 H 0.046 0.954 27 H 0.048 0.952 28 H 0.087 0.913 29 H 0.086 0.914 30 H 0.228 0.772 31 H 0.426 0.574 32 H 0.095 0.905 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.087 0.913 36 H 0.380 0.620 37 H 0.267 0.733 38 H 0.065 0.935 39 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.938 -5.440 21.713 22.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.083 4.083 3 C -0.134 4.134 4 N -0.182 5.182 5 C -0.332 4.332 6 S 0.457 5.543 7 C -0.212 4.212 8 N -0.277 5.277 9 C 0.411 3.589 10 O -0.478 6.478 11 N -0.352 5.352 12 C -0.022 4.022 13 C -0.156 4.156 14 C 0.176 3.824 15 O -0.368 6.368 16 C -0.586 4.586 17 H 0.064 0.936 18 C -0.174 4.174 19 N -0.574 5.574 20 Si 0.843 3.157 21 H -0.215 1.215 22 H -0.272 1.272 23 H -0.177 1.177 24 C -0.006 4.006 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.067 0.933 28 H 0.106 0.894 29 H 0.104 0.896 30 H 0.244 0.756 31 H 0.267 0.733 32 H 0.113 0.887 33 H 0.101 0.899 34 H 0.102 0.898 35 H 0.106 0.894 36 H 0.230 0.770 37 H 0.076 0.924 38 H 0.083 0.917 39 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -1.518 -4.531 21.743 22.262 hybrid contribution -0.718 -0.403 -0.832 1.170 sum -2.236 -4.934 20.911 21.601 Atomic orbital electron populations 1.21711 0.93851 1.02932 1.01477 1.20110 0.96482 0.87757 1.03995 1.20402 1.07876 1.00307 0.84780 1.66233 1.14254 1.07105 1.30570 1.28945 1.04715 0.96705 1.02788 1.85180 1.60717 1.08787 0.99610 1.23408 1.10076 0.99644 0.88040 1.41665 1.67949 1.17537 1.00500 1.15497 0.79273 0.83986 0.80179 1.90850 1.54473 1.19212 1.83262 1.47533 1.67985 1.16716 1.03009 1.22309 1.00566 0.82746 0.96602 1.22870 1.03491 0.96303 0.92907 1.20133 0.78892 0.92150 0.91183 1.86074 1.28711 1.27866 1.94141 1.21322 0.95689 1.50977 0.90604 0.93581 1.25859 1.04131 0.93086 0.94333 1.70085 1.38947 1.47944 1.00438 0.84691 0.78128 0.79199 0.73653 1.21545 1.27174 1.17727 1.22762 1.00089 0.95736 0.82009 0.89935 0.93499 0.93289 0.89436 0.89575 0.75617 0.73304 0.88682 0.89874 0.89823 0.89403 0.77049 0.92420 0.91653 0.91699 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.13 9.89 71.98 0.71 -1.42 16 2 C -0.04 -0.71 6.12 29.85 0.18 -0.53 16 3 C 0.00 0.06 6.02 41.66 0.25 0.31 16 4 N -0.47 -11.11 10.53 -191.08 -2.01 -13.12 16 5 C -0.03 -0.68 12.21 130.67 1.60 0.92 16 6 S 0.21 5.17 20.46 -56.49 -1.16 4.01 16 7 C 0.01 0.18 7.18 82.52 0.59 0.78 16 8 N -0.63 -15.34 5.36 -319.51 -1.71 -17.05 16 9 C 0.71 22.32 8.46 179.05 1.51 23.83 16 10 O -0.60 -22.43 14.23 -4.04 -0.06 -22.49 16 11 N -0.62 -19.10 3.33 -829.68 -2.76 -21.86 16 12 C 0.10 2.49 6.15 86.73 0.53 3.02 16 13 C -0.12 -3.86 5.90 31.79 0.19 -3.68 16 14 C 0.22 8.65 0.70 -10.14 -0.01 8.64 16 15 O -0.56 -21.70 8.52 -148.98 -1.27 -22.97 16 16 C -0.55 -27.87 8.89 25.60 0.23 -27.64 16 17 H 0.05 2.62 8.00 -2.91 -0.02 2.60 16 18 C 0.03 1.40 5.46 84.66 0.46 1.86 16 19 N -0.94 -55.24 13.96 21.45 0.30 -54.94 16 20 Si 1.01 45.71 24.93 68.60 1.71 47.42 16 21 H -0.29 -12.73 7.11 99.48 0.71 -12.02 16 22 H -0.34 -16.04 7.11 99.48 0.71 -15.33 16 23 H -0.25 -10.56 5.42 99.48 0.54 -10.02 16 24 C 0.12 4.32 6.07 86.86 0.53 4.85 16 25 H 0.08 0.89 8.14 -2.39 -0.02 0.87 16 26 H 0.05 0.76 8.14 -2.39 -0.02 0.74 16 27 H 0.05 0.84 8.14 -2.38 -0.02 0.82 16 28 H 0.09 1.36 8.14 -2.38 -0.02 1.34 16 29 H 0.09 1.10 7.20 -2.39 -0.02 1.09 16 30 H 0.23 2.82 8.06 -2.91 -0.02 2.79 16 31 H 0.43 7.79 6.60 -92.71 -0.61 7.18 16 32 H 0.10 1.77 8.14 -2.39 -0.02 1.75 16 33 H 0.08 1.79 8.14 -2.38 -0.02 1.77 16 34 H 0.08 2.76 6.65 -2.39 -0.02 2.75 16 35 H 0.09 2.88 8.03 -2.39 -0.02 2.86 16 36 H 0.38 13.41 8.99 -74.06 -0.67 12.75 16 37 H 0.27 14.94 8.31 -92.71 -0.77 14.17 16 38 H 0.06 2.50 8.02 -2.38 -0.02 2.48 16 39 H 0.06 2.51 7.99 -2.39 -0.02 2.49 16 Total: -1.00 -68.44 330.70 -0.53 -68.97 By element: Atomic # 1 Polarization: 21.44 SS G_CDS: -0.35 Total: 21.09 kcal Atomic # 6 Polarization: 4.16 SS G_CDS: 6.78 Total: 10.94 kcal Atomic # 7 Polarization: -100.79 SS G_CDS: -6.19 Total: -106.98 kcal Atomic # 8 Polarization: -44.13 SS G_CDS: -1.33 Total: -45.45 kcal Atomic # 14 Polarization: 45.71 SS G_CDS: 1.71 Total: 47.42 kcal Atomic # 16 Polarization: 5.17 SS G_CDS: -1.16 Total: 4.01 kcal Total: -68.44 -0.53 -68.97 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465953399.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 18.848 kcal (2) G-P(sol) polarization free energy of solvation -68.440 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.592 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.966 kcal (6) G-S(sol) free energy of system = (1) + (5) -50.118 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds