Wall clock time and date at job start Tue Mar 31 2020 09:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47173 * 2 1 4 4 N 1.31893 * 122.85231 * 270.33326 * 3 2 1 5 5 C 1.28901 * 117.19066 * 180.21298 * 4 3 2 6 6 S 1.70961 * 110.31528 * 359.49714 * 5 4 3 7 7 C 1.34342 * 122.84643 * 89.99744 * 3 2 1 8 8 N 1.39869 * 126.07016 * 0.02562 * 7 3 2 9 9 C 1.34776 * 120.00173 * 179.97438 * 8 7 3 10 10 O 1.21599 * 119.99676 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00151 * 179.97438 * 9 8 7 12 12 C 1.47028 * 125.64863 * 0.03348 * 11 9 8 13 13 C 1.54320 * 107.27406 * 181.01923 * 12 11 9 14 14 C 1.55166 * 102.94031 * 22.19031 * 13 12 11 15 15 O 1.42898 * 111.00283 * 82.57150 * 14 13 12 16 16 C 1.50701 * 111.00261 * 206.38759 * 14 13 12 17 17 H 1.08002 * 119.99743 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99811 * 179.97438 * 16 14 13 19 19 N 1.31511 * 120.00243 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99724 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47374 * 120.00275 * 20 18 16 23 23 H 1.48503 * 109.46920 * 240.00074 * 20 18 16 24 24 C 1.47418 * 125.64911 * 179.71748 * 11 9 8 25 25 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47298 * 299.99802 * 1 2 3 27 27 H 1.08993 * 109.47047 * 60.00412 * 1 2 3 28 28 H 1.09002 * 109.47298 * 240.00197 * 2 1 3 29 29 H 1.09006 * 109.47206 * 119.99830 * 2 1 3 30 30 H 1.08002 * 124.84580 * 179.77272 * 5 4 3 31 31 H 0.97003 * 119.99346 * 0.02562 * 8 7 3 32 32 H 1.09004 * 109.88001 * 300.43879 * 12 11 9 33 33 H 1.08997 * 109.88652 * 61.59569 * 12 11 9 34 34 H 1.09002 * 110.72174 * 140.55064 * 13 12 11 35 35 H 1.09001 * 110.72128 * 263.65200 * 13 12 11 36 36 H 0.96703 * 113.99799 * 179.97438 * 15 14 13 37 37 H 0.96996 * 120.00157 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.37069 * 274.75051 * 24 11 9 39 39 H 1.08999 * 110.36626 * 37.07237 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2648 2.0975 -1.1080 5 6 2.6971 3.3052 -0.9808 6 16 2.8415 3.7129 0.6731 7 6 2.2752 2.1078 1.1286 8 7 2.1079 1.6333 2.4337 9 6 2.3905 2.4314 3.4824 10 8 2.7905 3.5641 3.2939 11 7 2.2288 1.9743 4.7399 12 6 1.7546 0.6326 5.1096 13 6 1.7054 0.5726 6.6508 14 6 1.6141 2.0681 7.0541 15 8 0.2669 2.5383 6.9759 16 6 2.1821 2.2917 8.4319 17 1 2.5804 1.4595 8.9933 18 6 2.1944 3.5589 8.9752 19 7 1.7099 4.5723 8.2913 20 14 2.8992 3.8361 10.6828 21 1 3.3760 2.5437 11.2373 22 1 4.0349 4.7893 10.6008 23 1 1.8463 4.3957 11.5680 24 6 2.5043 2.7346 5.9724 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9302 3.9668 -1.8020 31 1 1.7892 0.7295 2.5839 32 1 0.7583 0.4657 4.7001 33 1 2.4443 -0.1218 4.7311 34 1 0.8234 0.0278 6.9876 35 1 2.6128 0.1179 7.0483 36 1 0.1601 3.4681 7.2192 37 1 1.7189 5.4638 8.6734 38 1 3.5575 2.6526 6.2414 39 1 2.2251 3.7803 5.8435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465953407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:02 Heat of formation + Delta-G solvation = -32.807366 kcal Electronic energy + Delta-G solvation = -23892.008729 eV Core-core repulsion = 20347.504418 eV Total energy + Delta-G solvation = -3544.504311 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.45511 -39.49356 -37.65247 -34.92165 -34.45444 -33.18466 -32.24441 -30.44369 -28.53628 -27.83742 -25.62851 -24.67909 -23.28007 -22.89842 -20.40813 -19.94021 -19.57288 -17.95266 -17.49489 -17.20487 -16.47599 -15.76382 -15.32190 -15.04713 -14.73159 -14.45501 -14.10228 -13.88954 -13.74422 -13.54821 -13.19279 -12.98564 -12.41818 -12.34176 -11.96061 -11.76833 -11.70524 -11.29865 -11.17518 -11.07538 -10.91556 -10.89434 -10.75075 -10.54842 -10.29378 -10.18082 -9.54034 -9.27407 -8.88385 -8.78070 -8.54023 -8.17692 -7.77199 -6.38481 -4.48411 0.90565 1.28546 1.98285 2.73774 2.80220 3.14369 3.23689 3.26480 3.41421 4.08738 4.20422 4.33796 4.88226 4.89641 5.05499 5.20913 5.24288 5.28114 5.45683 5.50600 5.62050 5.75021 5.84650 5.89146 5.93258 6.01712 6.15057 6.34992 6.41297 6.53227 6.65234 6.70013 6.97793 7.16383 7.27020 7.65054 7.87115 7.88283 8.07727 8.55012 8.61312 9.21801 9.35580 10.68912 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.003574 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.062544 B = 7833.206523 C = 8578.620164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.039 4.039 3 C -0.012 4.012 4 N -0.445 5.445 5 C -0.063 4.063 6 S 0.243 5.757 7 C 0.040 3.960 8 N -0.644 5.644 9 C 0.706 3.294 10 O -0.565 6.565 11 N -0.614 5.614 12 C 0.099 3.901 13 C -0.115 4.115 14 C 0.250 3.750 15 O -0.583 6.583 16 C -0.539 4.539 17 H 0.069 0.931 18 C 0.071 3.929 19 N -0.894 5.894 20 Si 0.905 3.095 21 H -0.271 1.271 22 H -0.281 1.281 23 H -0.281 1.281 24 C 0.109 3.891 25 H 0.060 0.940 26 H 0.053 0.947 27 H 0.059 0.941 28 H 0.080 0.920 29 H 0.067 0.933 30 H 0.193 0.807 31 H 0.412 0.588 32 H 0.060 0.940 33 H 0.055 0.945 34 H 0.077 0.923 35 H 0.079 0.921 36 H 0.387 0.613 37 H 0.272 0.728 38 H 0.063 0.937 39 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.361 -6.778 -12.811 14.498 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.079 4.079 3 C -0.149 4.149 4 N -0.159 5.159 5 C -0.361 4.361 6 S 0.492 5.508 7 C -0.181 4.181 8 N -0.292 5.292 9 C 0.408 3.592 10 O -0.444 6.444 11 N -0.349 5.349 12 C -0.025 4.025 13 C -0.153 4.153 14 C 0.209 3.791 15 O -0.394 6.394 16 C -0.577 4.577 17 H 0.087 0.913 18 C -0.132 4.132 19 N -0.533 5.533 20 Si 0.733 3.267 21 H -0.195 1.195 22 H -0.207 1.207 23 H -0.207 1.207 24 C -0.012 4.012 25 H 0.079 0.921 26 H 0.072 0.928 27 H 0.078 0.922 28 H 0.099 0.901 29 H 0.086 0.914 30 H 0.210 0.790 31 H 0.250 0.750 32 H 0.078 0.922 33 H 0.073 0.927 34 H 0.096 0.904 35 H 0.098 0.902 36 H 0.240 0.760 37 H 0.082 0.918 38 H 0.081 0.919 39 H 0.103 0.897 Dipole moment (debyes) X Y Z Total from point charges 0.762 -5.639 -13.077 14.261 hybrid contribution 0.053 -0.462 1.050 1.148 sum 0.815 -6.101 -12.027 13.511 Atomic orbital electron populations 1.21753 0.94627 1.01699 1.02393 1.19925 0.95928 0.89389 1.02699 1.19913 1.10259 0.99333 0.85347 1.66112 1.12951 1.06386 1.30411 1.28370 1.07519 0.97118 1.03107 1.85108 1.59998 1.08019 0.97676 1.23361 1.07435 0.99297 0.88007 1.42106 1.68439 1.17381 1.01265 1.15554 0.79608 0.84125 0.79939 1.90853 1.53252 1.17705 1.82552 1.47894 1.66810 1.16250 1.03922 1.22082 0.98059 0.83666 0.98655 1.22609 1.02283 0.99267 0.91171 1.19635 0.80438 0.87453 0.91565 1.86065 1.28139 1.33700 1.91476 1.21518 1.41302 0.94439 1.00457 0.91278 1.25089 0.94039 0.95711 0.98349 1.69560 1.45445 1.00458 1.37857 0.86316 0.78804 0.78433 0.83183 1.19531 1.20684 1.20674 1.23400 1.00194 0.97460 0.80162 0.92139 0.92802 0.92234 0.90095 0.91402 0.79042 0.75022 0.92154 0.92671 0.90435 0.90219 0.76036 0.91787 0.91876 0.89686 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.45 9.89 37.16 0.37 -1.08 16 2 C -0.04 -0.42 6.12 -27.88 -0.17 -0.59 16 3 C -0.01 -0.17 6.02 -83.94 -0.51 -0.68 16 4 N -0.45 -6.31 10.53 -11.75 -0.12 -6.44 16 5 C -0.06 -0.79 12.21 51.53 0.63 -0.16 16 6 S 0.24 3.56 20.46 -107.50 -2.20 1.36 16 7 C 0.04 0.60 7.18 -15.25 -0.11 0.49 16 8 N -0.64 -9.82 5.36 -14.96 -0.08 -9.90 16 9 C 0.71 13.51 8.46 -86.92 -0.74 12.77 16 10 O -0.57 -12.40 14.23 5.28 0.08 -12.32 16 11 N -0.61 -11.83 3.32 -176.10 -0.59 -12.41 16 12 C 0.10 1.57 6.15 -3.06 -0.02 1.55 16 13 C -0.12 -2.11 6.12 -24.89 -0.15 -2.26 16 14 C 0.25 5.72 0.89 -89.50 -0.08 5.64 16 15 O -0.58 -14.33 13.19 -35.23 -0.46 -14.79 16 16 C -0.54 -13.34 8.25 -34.44 -0.28 -13.63 16 17 H 0.07 1.67 7.77 -52.49 -0.41 1.27 16 18 C 0.07 1.79 5.29 -17.82 -0.09 1.69 16 19 N -0.89 -22.99 10.72 55.43 0.59 -22.40 16 20 Si 0.91 19.62 29.54 -169.99 -5.02 14.60 16 21 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 22 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 23 H -0.28 -6.11 7.11 56.52 0.40 -5.71 16 24 C 0.11 2.47 5.64 -2.41 -0.01 2.46 16 25 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 29 H 0.07 0.63 7.21 -51.93 -0.37 0.25 16 30 H 0.19 1.72 8.06 -52.49 -0.42 1.30 16 31 H 0.41 5.13 6.61 -40.82 -0.27 4.86 16 32 H 0.06 0.89 8.14 -51.93 -0.42 0.46 16 33 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 34 H 0.08 1.35 8.14 -51.93 -0.42 0.93 16 35 H 0.08 1.36 8.02 -51.93 -0.42 0.94 16 36 H 0.39 9.94 6.93 45.56 0.32 10.26 16 37 H 0.27 6.71 8.31 -40.82 -0.34 6.37 16 38 H 0.06 1.46 8.04 -51.93 -0.42 1.04 16 39 H 0.08 2.19 7.64 -51.93 -0.40 1.79 16 LS Contribution 336.49 15.07 5.07 5.07 Total: -1.00 -28.90 336.49 -8.38 -37.29 By element: Atomic # 1 Polarization: 18.24 SS G_CDS: -4.48 Total: 13.75 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -1.17 Total: 6.19 kcal Atomic # 7 Polarization: -50.95 SS G_CDS: -0.20 Total: -51.15 kcal Atomic # 8 Polarization: -26.73 SS G_CDS: -0.39 Total: -27.12 kcal Atomic # 14 Polarization: 19.62 SS G_CDS: -5.02 Total: 14.60 kcal Atomic # 16 Polarization: 3.56 SS G_CDS: -2.20 Total: 1.36 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -28.90 -8.38 -37.29 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465953407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 4.480 kcal (2) G-P(sol) polarization free energy of solvation -28.902 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.422 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.287 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.807 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds