Wall clock time and date at job start Tue Mar 31 2020 09:58:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.47173 * 2 1 4 4 N 1.31893 * 122.85231 * 270.33326 * 3 2 1 5 5 C 1.28901 * 117.19066 * 180.21298 * 4 3 2 6 6 S 1.70961 * 110.31528 * 359.49714 * 5 4 3 7 7 C 1.34342 * 122.84643 * 89.99744 * 3 2 1 8 8 N 1.39869 * 126.07016 * 0.02562 * 7 3 2 9 9 C 1.34776 * 120.00173 * 179.97438 * 8 7 3 10 10 O 1.21599 * 119.99676 * 0.02562 * 9 8 7 11 11 N 1.34771 * 120.00151 * 179.97438 * 9 8 7 12 12 C 1.47028 * 125.64863 * 0.03348 * 11 9 8 13 13 C 1.54320 * 107.27406 * 181.01923 * 12 11 9 14 14 C 1.55166 * 102.94031 * 22.19031 * 13 12 11 15 15 O 1.42898 * 111.00283 * 82.57150 * 14 13 12 16 16 C 1.50701 * 111.00261 * 206.38759 * 14 13 12 17 17 H 1.08002 * 119.99743 * 0.02562 * 16 14 13 18 18 C 1.37878 * 119.99811 * 179.97438 * 16 14 13 19 19 N 1.31511 * 120.00243 * 0.02562 * 18 16 14 20 20 Si 1.86799 * 119.99724 * 180.02562 * 18 16 14 21 21 H 1.48497 * 109.47238 * 359.97438 * 20 18 16 22 22 H 1.48494 * 109.47374 * 120.00275 * 20 18 16 23 23 H 1.48503 * 109.46920 * 240.00074 * 20 18 16 24 24 C 1.47418 * 125.64911 * 179.71748 * 11 9 8 25 25 H 1.09001 * 109.46851 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47298 * 299.99802 * 1 2 3 27 27 H 1.08993 * 109.47047 * 60.00412 * 1 2 3 28 28 H 1.09002 * 109.47298 * 240.00197 * 2 1 3 29 29 H 1.09006 * 109.47206 * 119.99830 * 2 1 3 30 30 H 1.08002 * 124.84580 * 179.77272 * 5 4 3 31 31 H 0.97003 * 119.99346 * 0.02562 * 8 7 3 32 32 H 1.09004 * 109.88001 * 300.43879 * 12 11 9 33 33 H 1.08997 * 109.88652 * 61.59569 * 12 11 9 34 34 H 1.09002 * 110.72174 * 140.55064 * 13 12 11 35 35 H 1.09001 * 110.72128 * 263.65200 * 13 12 11 36 36 H 0.96703 * 113.99799 * 179.97438 * 15 14 13 37 37 H 0.96996 * 120.00157 * 180.02562 * 19 18 16 38 38 H 1.09003 * 110.37069 * 274.75051 * 24 11 9 39 39 H 1.08999 * 110.36626 * 37.07237 * 24 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 7 2.2648 2.0975 -1.1080 5 6 2.6971 3.3052 -0.9808 6 16 2.8415 3.7129 0.6731 7 6 2.2752 2.1078 1.1286 8 7 2.1079 1.6333 2.4337 9 6 2.3905 2.4314 3.4824 10 8 2.7905 3.5641 3.2939 11 7 2.2288 1.9743 4.7399 12 6 1.7546 0.6326 5.1096 13 6 1.7054 0.5726 6.6508 14 6 1.6141 2.0681 7.0541 15 8 0.2669 2.5383 6.9759 16 6 2.1821 2.2917 8.4319 17 1 2.5804 1.4595 8.9933 18 6 2.1944 3.5589 8.9752 19 7 1.7099 4.5723 8.2913 20 14 2.8992 3.8361 10.6828 21 1 3.3760 2.5437 11.2373 22 1 4.0349 4.7893 10.6008 23 1 1.8463 4.3957 11.5680 24 6 2.5043 2.7346 5.9724 25 1 -0.3633 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5137 -0.8900 28 1 1.8934 -0.5138 -0.8900 29 1 1.8934 -0.5138 0.8900 30 1 2.9302 3.9668 -1.8020 31 1 1.7892 0.7295 2.5839 32 1 0.7583 0.4657 4.7001 33 1 2.4443 -0.1218 4.7311 34 1 0.8234 0.0278 6.9876 35 1 2.6128 0.1179 7.0483 36 1 0.1601 3.4681 7.2192 37 1 1.7189 5.4638 8.6734 38 1 3.5575 2.6526 6.2414 39 1 2.2251 3.7803 5.8435 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001465953407.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:58:02 Heat of formation + Delta-G solvation = -53.558718 kcal Electronic energy + Delta-G solvation = -23892.908575 eV Core-core repulsion = 20347.504418 eV Total energy + Delta-G solvation = -3545.404157 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.109 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.79248 -40.70592 -39.24579 -36.27367 -36.09888 -34.16538 -34.12077 -31.97370 -29.86128 -29.29222 -27.15600 -26.02185 -24.38345 -24.15480 -21.74238 -21.55324 -20.84320 -19.37494 -19.08539 -18.49978 -17.72143 -17.18013 -17.05614 -16.58376 -16.17512 -15.86741 -15.15420 -14.95878 -14.93294 -14.82994 -14.69363 -14.61497 -13.90784 -13.52580 -13.39769 -13.26865 -12.88276 -12.85328 -12.59791 -12.40540 -12.31886 -12.20625 -12.13161 -12.12426 -11.85202 -11.60401 -11.26900 -10.66884 -10.42117 -10.37606 -10.03686 -9.64341 -9.00661 -8.27291 -6.43913 -0.20139 0.19785 0.85481 1.38935 1.43930 1.46538 1.55806 1.64543 2.06616 2.37501 2.79371 2.99548 3.39419 3.74825 3.94622 4.07279 4.12508 4.17163 4.27938 4.37600 4.45374 4.55825 4.67293 4.70849 4.90374 4.99463 5.02733 5.05639 5.11960 5.16410 5.27610 5.34413 5.40146 5.43286 5.75554 5.78063 6.03209 6.61454 6.71419 6.79332 7.17092 7.29153 7.37872 8.78513 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024859 B = 0.003574 C = 0.003263 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1126.062544 B = 7833.206523 C = 8578.620164 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.042 4.042 3 C 0.002 3.998 4 N -0.465 5.465 5 C -0.032 4.032 6 S 0.197 5.803 7 C 0.008 3.992 8 N -0.626 5.626 9 C 0.703 3.297 10 O -0.603 6.603 11 N -0.619 5.619 12 C 0.099 3.901 13 C -0.110 4.110 14 C 0.232 3.768 15 O -0.590 6.590 16 C -0.554 4.554 17 H 0.072 0.928 18 C 0.027 3.973 19 N -0.918 5.918 20 Si 0.964 3.036 21 H -0.263 1.263 22 H -0.283 1.283 23 H -0.281 1.281 24 C 0.125 3.875 25 H 0.084 0.916 26 H 0.043 0.957 27 H 0.048 0.952 28 H 0.090 0.910 29 H 0.086 0.914 30 H 0.229 0.771 31 H 0.426 0.574 32 H 0.077 0.923 33 H 0.097 0.903 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.378 0.622 37 H 0.271 0.729 38 H 0.050 0.950 39 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.412 -9.068 -13.908 16.609 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.082 4.082 3 C -0.134 4.134 4 N -0.179 5.179 5 C -0.330 4.330 6 S 0.447 5.553 7 C -0.211 4.211 8 N -0.276 5.276 9 C 0.404 3.596 10 O -0.484 6.484 11 N -0.354 5.354 12 C -0.022 4.022 13 C -0.148 4.148 14 C 0.191 3.809 15 O -0.399 6.399 16 C -0.593 4.593 17 H 0.090 0.910 18 C -0.174 4.174 19 N -0.558 5.558 20 Si 0.789 3.211 21 H -0.187 1.187 22 H -0.209 1.209 23 H -0.207 1.207 24 C 0.002 3.998 25 H 0.103 0.897 26 H 0.062 0.938 27 H 0.067 0.933 28 H 0.108 0.892 29 H 0.104 0.896 30 H 0.245 0.755 31 H 0.267 0.733 32 H 0.095 0.905 33 H 0.115 0.885 34 H 0.106 0.894 35 H 0.111 0.889 36 H 0.228 0.772 37 H 0.080 0.920 38 H 0.068 0.932 39 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges 0.798 -7.997 -14.203 16.319 hybrid contribution 0.034 0.260 1.242 1.269 sum 0.832 -7.736 -12.961 15.117 Atomic orbital electron populations 1.21714 0.93874 1.02997 1.01397 1.20112 0.96455 0.87591 1.04065 1.20428 1.07991 1.00330 0.84640 1.66234 1.14208 1.07009 1.30433 1.28945 1.04664 0.96821 1.02593 1.85295 1.60823 1.09352 0.99853 1.23432 1.10049 0.99494 0.88132 1.41678 1.68057 1.17427 1.00444 1.15648 0.79460 0.84030 0.80446 1.90833 1.54739 1.19475 1.83324 1.47780 1.67233 1.17189 1.03184 1.22286 1.00127 0.82703 0.97126 1.22606 1.03421 0.95814 0.92910 1.19899 0.79480 0.90507 0.90970 1.86055 1.29425 1.32952 1.91460 1.21867 1.41229 0.94591 1.01568 0.90972 1.25811 0.94438 0.95655 1.01466 1.69674 1.46387 1.00640 1.39100 0.85409 0.77869 0.78365 0.79407 1.18655 1.20941 1.20701 1.22898 0.99239 0.95641 0.82048 0.89716 0.93758 0.93251 0.89194 0.89580 0.75474 0.73335 0.90456 0.88533 0.89440 0.88923 0.77169 0.91978 0.93158 0.93845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.42 9.89 71.98 0.71 -1.71 16 2 C -0.04 -0.78 6.12 29.85 0.18 -0.60 16 3 C 0.00 0.06 6.02 41.66 0.25 0.31 16 4 N -0.47 -12.19 10.53 -191.08 -2.01 -14.20 16 5 C -0.03 -0.74 12.21 130.67 1.60 0.86 16 6 S 0.20 5.75 20.46 -56.49 -1.16 4.59 16 7 C 0.01 0.23 7.18 82.52 0.59 0.82 16 8 N -0.63 -18.30 5.36 -319.51 -1.71 -20.02 16 9 C 0.70 26.86 8.46 179.06 1.51 28.38 16 10 O -0.60 -27.30 14.23 -4.03 -0.06 -27.35 16 11 N -0.62 -23.60 3.32 -829.31 -2.76 -26.36 16 12 C 0.10 2.89 6.15 86.73 0.53 3.43 16 13 C -0.11 -3.79 6.12 31.78 0.19 -3.60 16 14 C 0.23 10.66 0.89 -10.07 -0.01 10.65 16 15 O -0.59 -29.44 13.19 -148.98 -1.97 -31.40 16 16 C -0.55 -27.56 8.25 25.60 0.21 -27.35 16 17 H 0.07 3.45 7.77 -2.91 -0.02 3.43 16 18 C 0.03 1.36 5.29 84.66 0.45 1.81 16 19 N -0.92 -48.73 10.72 21.45 0.23 -48.50 16 20 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 21 H -0.26 -10.58 7.11 99.48 0.71 -9.87 16 22 H -0.28 -11.93 7.11 99.48 0.71 -11.22 16 23 H -0.28 -11.74 7.11 99.48 0.71 -11.03 16 24 C 0.12 5.81 5.64 86.93 0.49 6.30 16 25 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 26 H 0.04 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 28 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 29 H 0.09 1.28 7.21 -2.38 -0.02 1.27 16 30 H 0.23 3.40 8.06 -2.91 -0.02 3.38 16 31 H 0.43 9.51 6.61 -92.71 -0.61 8.90 16 32 H 0.08 2.02 8.14 -2.38 -0.02 2.00 16 33 H 0.10 2.07 8.14 -2.39 -0.02 2.05 16 34 H 0.09 2.84 8.14 -2.39 -0.02 2.82 16 35 H 0.09 2.94 8.02 -2.39 -0.02 2.92 16 36 H 0.38 20.14 6.93 -74.06 -0.51 19.63 16 37 H 0.27 13.79 8.31 -92.71 -0.77 13.02 16 38 H 0.05 2.40 8.04 -2.39 -0.02 2.39 16 39 H 0.04 2.35 7.64 -2.39 -0.02 2.33 16 Total: -1.00 -64.43 336.49 -0.72 -65.15 By element: Atomic # 1 Polarization: 36.31 SS G_CDS: -0.03 Total: 36.27 kcal Atomic # 6 Polarization: 12.57 SS G_CDS: 6.72 Total: 19.28 kcal Atomic # 7 Polarization: -102.82 SS G_CDS: -6.25 Total: -109.07 kcal Atomic # 8 Polarization: -56.73 SS G_CDS: -2.02 Total: -58.76 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Atomic # 16 Polarization: 5.75 SS G_CDS: -1.16 Total: 4.59 kcal Total: -64.43 -0.72 -65.15 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465953407.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.587 kcal (2) G-P(sol) polarization free energy of solvation -64.427 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -52.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.719 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.146 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.559 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds