Wall clock time and date at job start Tue Mar 31 2020 10:35:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47051 * 60.00574 * 8 6 4 10 10 H 1.48501 * 109.46677 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47226 * 299.99990 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38435 * 119.83586 * 269.72757 * 15 14 13 17 17 C 1.37881 * 120.18723 * 179.72379 * 16 15 14 18 18 C 1.39689 * 119.85975 * 0.52591 * 17 16 15 19 19 C 1.47638 * 120.16355 * 179.72648 * 18 17 16 20 20 O 1.21476 * 120.00439 * 180.02562 * 19 18 17 21 21 O 1.34724 * 120.00006 * 0.02562 * 19 18 17 22 22 C 1.39752 * 119.67589 * 359.74847 * 18 17 16 23 23 Cl 1.73602 * 120.09283 * 179.97438 * 22 18 17 24 24 C 1.38136 * 119.80872 * 0.02562 * 22 18 17 25 25 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 27 27 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 30 30 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 31 31 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 33 33 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 34 34 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 36 36 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 37 37 H 1.07991 * 119.90757 * 0.02562 * 16 15 14 38 38 H 1.07999 * 120.07284 * 180.27507 * 17 16 15 39 39 H 0.96696 * 117.00216 * 180.02562 * 21 19 18 40 40 H 1.08010 * 119.92981 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2203 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2444 1.0692 5.4320 17 6 1.7715 1.7518 6.5327 18 6 0.5428 1.3981 7.0953 19 6 0.0328 2.1205 8.2776 20 8 -1.0358 1.8102 8.7648 21 8 0.7526 3.1240 8.8161 22 6 -0.2011 0.3567 6.5340 23 17 -1.7292 -0.0923 7.2248 24 6 0.2834 -0.3150 5.4284 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 0.7095 1.1616 -3.4845 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2494 34 1 1.8198 0.9437 2.4401 35 1 1.6586 -1.7220 3.6874 36 1 3.1116 -0.6939 3.6870 37 1 3.1959 1.3396 4.9987 38 1 2.3516 2.5556 6.9614 39 1 0.3779 3.5670 9.5896 40 1 -0.2901 -1.1198 4.9927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001590615198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:35 Heat of formation + Delta-G solvation = -71.241463 kcal Electronic energy + Delta-G solvation = -22858.394780 eV Core-core repulsion = 19277.887384 eV Total energy + Delta-G solvation = -3580.507396 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.66265 -39.22325 -37.07928 -36.57537 -36.19875 -34.33142 -32.00097 -31.08771 -30.36832 -26.65262 -25.60476 -25.23320 -23.89908 -23.09798 -22.58152 -21.07035 -18.53170 -18.41275 -17.70916 -16.34284 -15.92725 -15.90205 -15.75773 -15.05929 -14.71950 -14.51747 -14.29113 -13.97725 -13.55166 -13.37313 -13.03474 -12.50825 -12.36022 -12.06887 -11.83087 -11.77324 -11.56704 -11.56286 -11.40577 -11.14356 -11.02309 -10.67767 -10.64992 -10.22242 -10.17327 -10.09331 -9.43045 -9.32190 -9.09434 -8.99728 -8.66951 -8.31969 -7.85334 -5.94066 -4.04952 0.31566 0.95600 1.92583 2.28470 2.71086 3.30675 3.35945 3.36691 3.38625 4.38289 4.40985 4.50194 4.71244 4.90240 4.97910 5.05759 5.16462 5.31491 5.44068 5.61987 5.72688 5.82199 5.89583 6.19040 6.20375 6.26316 6.31887 6.43144 6.65828 6.83515 7.01889 7.11818 7.33405 7.40073 7.61302 7.63217 7.72134 7.78871 7.83092 8.16873 8.30679 8.51661 8.96240 9.60330 11.06414 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002624 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.552638 B =10667.419896 C =10961.531867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C 0.070 3.930 3 C -0.133 4.133 4 C -0.509 4.509 5 H 0.052 0.948 6 C 0.066 3.934 7 N -0.884 5.884 8 Si 0.889 3.111 9 H -0.278 1.278 10 H -0.288 1.288 11 H -0.279 1.279 12 C 0.075 3.925 13 N -0.680 5.680 14 C 0.087 3.913 15 C -0.019 4.019 16 C -0.128 4.128 17 C -0.048 4.048 18 C -0.133 4.133 19 C 0.522 3.478 20 O -0.495 6.495 21 O -0.514 6.514 22 C 0.021 3.979 23 Cl -0.034 7.034 24 C -0.103 4.103 25 H 0.020 0.980 26 H 0.074 0.926 27 H 0.018 0.982 28 H 0.019 0.981 29 H 0.084 0.916 30 H 0.010 0.990 31 H 0.259 0.741 32 H 0.016 0.984 33 H 0.059 0.941 34 H 0.340 0.660 35 H 0.083 0.917 36 H 0.041 0.959 37 H 0.137 0.863 38 H 0.145 0.855 39 H 0.414 0.586 40 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.597 2.256 20.587 20.771 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C 0.069 3.931 3 C -0.191 4.191 4 C -0.548 4.548 5 H 0.070 0.930 6 C -0.135 4.135 7 N -0.523 5.523 8 Si 0.717 3.283 9 H -0.204 1.204 10 H -0.213 1.213 11 H -0.205 1.205 12 C -0.053 4.053 13 N -0.312 5.312 14 C -0.042 4.042 15 C -0.020 4.020 16 C -0.146 4.146 17 C -0.067 4.067 18 C -0.136 4.136 19 C 0.366 3.634 20 O -0.383 6.383 21 O -0.326 6.326 22 C -0.007 4.007 23 Cl -0.005 7.005 24 C -0.122 4.122 25 H 0.039 0.961 26 H 0.093 0.907 27 H 0.037 0.963 28 H 0.038 0.962 29 H 0.102 0.898 30 H 0.029 0.971 31 H 0.069 0.931 32 H 0.034 0.966 33 H 0.077 0.923 34 H 0.159 0.841 35 H 0.101 0.899 36 H 0.059 0.941 37 H 0.155 0.845 38 H 0.163 0.837 39 H 0.273 0.727 40 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 0.635 1.711 20.275 20.357 hybrid contribution 0.924 0.051 -0.324 0.980 sum 1.559 1.762 19.951 20.089 Atomic orbital electron populations 1.21649 0.97338 0.98625 1.00147 1.18086 0.93238 0.91944 0.89807 1.21843 0.97691 0.99178 1.00354 1.21059 1.31316 1.11952 0.90466 0.93018 1.24880 0.94977 0.94953 0.98702 1.69820 1.36643 1.22723 1.23093 0.86716 0.79083 0.79857 0.82631 1.20377 1.21349 1.20472 1.22213 0.95663 0.97949 0.89490 1.60697 1.63501 1.06566 1.00455 1.21028 0.97171 0.98175 0.87817 1.20244 0.92811 0.94119 0.94848 1.21214 1.01016 0.96018 0.96368 1.21381 0.93100 0.97914 0.94284 1.18756 0.97724 0.99498 0.97588 1.20701 0.81992 0.77762 0.82956 1.90982 1.21710 1.64548 1.61023 1.84539 1.52933 1.47080 1.48069 1.21026 0.88995 0.95386 0.95264 1.98420 1.27316 1.91298 1.83454 1.20980 0.96156 1.00996 0.94060 0.96101 0.90720 0.96263 0.96192 0.89769 0.97076 0.93078 0.96590 0.92282 0.84055 0.89882 0.94144 0.84543 0.83714 0.72729 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.85 8.09 37.16 0.30 -2.55 16 2 C 0.07 1.62 0.57 -155.66 -0.09 1.53 16 3 C -0.13 -3.02 7.92 37.16 0.29 -2.73 16 4 C -0.51 -13.33 8.01 -34.44 -0.28 -13.61 16 5 H 0.05 1.35 7.74 -52.49 -0.41 0.94 16 6 C 0.07 1.76 5.15 -17.82 -0.09 1.66 16 7 N -0.88 -24.10 9.35 55.43 0.52 -23.58 16 8 Si 0.89 20.75 29.54 -169.99 -5.02 15.72 16 9 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 10 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 11 H -0.28 -6.47 7.11 56.52 0.40 -6.07 16 12 C 0.07 1.45 4.59 -3.82 -0.02 1.43 16 13 N -0.68 -10.99 5.70 -115.05 -0.66 -11.65 16 14 C 0.09 1.10 5.80 -4.97 -0.03 1.07 16 15 C -0.02 -0.22 5.40 -104.54 -0.56 -0.78 16 16 C -0.13 -1.26 9.68 -39.64 -0.38 -1.65 16 17 C -0.05 -0.46 9.62 -39.17 -0.38 -0.84 16 18 C -0.13 -1.52 5.88 -104.95 -0.62 -2.14 16 19 C 0.52 5.78 8.26 34.57 0.29 6.07 16 20 O -0.49 -6.66 14.76 -19.25 -0.28 -6.94 16 21 O -0.51 -3.93 12.68 -40.56 -0.51 -4.44 16 22 C 0.02 0.25 6.35 -39.05 -0.25 0.01 16 23 Cl -0.03 -0.44 26.03 -51.86 -1.35 -1.79 16 24 C -0.10 -1.22 9.46 -39.61 -0.37 -1.59 16 25 H 0.02 0.45 7.60 -51.93 -0.39 0.06 16 26 H 0.07 1.96 6.07 -51.93 -0.32 1.65 16 27 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 28 H 0.02 0.43 8.14 -51.93 -0.42 0.01 16 29 H 0.08 2.15 6.07 -51.93 -0.32 1.84 16 30 H 0.01 0.21 6.57 -51.93 -0.34 -0.13 16 31 H 0.26 6.84 8.31 -40.82 -0.34 6.50 16 32 H 0.02 0.31 8.14 -51.93 -0.42 -0.12 16 33 H 0.06 1.17 8.14 -51.93 -0.42 0.74 16 34 H 0.34 5.48 6.76 -39.29 -0.27 5.21 16 35 H 0.08 1.02 8.08 -51.93 -0.42 0.60 16 36 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.14 1.11 8.06 -52.49 -0.42 0.69 16 38 H 0.15 1.08 7.61 -52.49 -0.40 0.68 16 39 H 0.41 1.31 9.11 45.56 0.42 1.73 16 40 H 0.15 1.64 8.06 -52.48 -0.42 1.22 16 LS Contribution 344.86 15.07 5.20 5.20 Total: -1.00 -29.53 344.86 -8.83 -38.36 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: -4.53 Total: 3.23 kcal Atomic # 6 Polarization: -11.93 SS G_CDS: -2.19 Total: -14.11 kcal Atomic # 7 Polarization: -35.09 SS G_CDS: -0.14 Total: -35.23 kcal Atomic # 8 Polarization: -10.59 SS G_CDS: -0.80 Total: -11.38 kcal Atomic # 14 Polarization: 20.75 SS G_CDS: -5.02 Total: 15.72 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.35 Total: -1.79 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -29.53 -8.83 -38.36 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.878 kcal (2) G-P(sol) polarization free energy of solvation -29.533 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.412 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.830 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.363 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds