Wall clock time and date at job start Tue Mar 31 2020 10:35:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52999 * 109.47397 * 2 1 4 4 C 1.50703 * 109.47248 * 239.99464 * 2 1 3 5 5 H 1.07995 * 120.00107 * 240.00273 * 4 2 1 6 6 C 1.37878 * 119.99714 * 60.00009 * 4 2 1 7 7 N 1.31510 * 119.99944 * 0.02562 * 6 4 2 8 8 Si 1.86799 * 119.99765 * 179.97438 * 6 4 2 9 9 H 1.48494 * 109.47051 * 60.00574 * 8 6 4 10 10 H 1.48501 * 109.46677 * 180.02562 * 8 6 4 11 11 H 1.48497 * 109.47226 * 299.99990 * 8 6 4 12 12 C 1.53004 * 109.46923 * 119.99895 * 2 1 3 13 13 N 1.46901 * 109.46916 * 299.99733 * 12 2 1 14 14 C 1.46905 * 110.99870 * 180.02562 * 13 12 2 15 15 C 1.50697 * 109.47066 * 180.02562 * 14 13 12 16 16 C 1.38435 * 119.83586 * 269.72757 * 15 14 13 17 17 C 1.37881 * 120.18723 * 179.72379 * 16 15 14 18 18 C 1.39689 * 119.85975 * 0.52591 * 17 16 15 19 19 C 1.47638 * 120.16355 * 179.72648 * 18 17 16 20 20 O 1.21476 * 120.00439 * 180.02562 * 19 18 17 21 21 O 1.34724 * 120.00006 * 0.02562 * 19 18 17 22 22 C 1.39752 * 119.67589 * 359.74847 * 18 17 16 23 23 Cl 1.73602 * 120.09283 * 179.97438 * 22 18 17 24 24 C 1.38136 * 119.80872 * 0.02562 * 22 18 17 25 25 H 1.09002 * 109.47301 * 300.00132 * 1 2 3 26 26 H 1.09001 * 109.47017 * 60.00685 * 1 2 3 27 27 H 1.09005 * 109.47249 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46999 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46478 * 299.99645 * 3 2 1 30 30 H 1.08993 * 109.47197 * 59.99666 * 3 2 1 31 31 H 0.97007 * 120.00038 * 179.97438 * 7 6 4 32 32 H 1.09004 * 109.46889 * 180.02562 * 12 2 1 33 33 H 1.08995 * 109.47384 * 59.99754 * 12 2 1 34 34 H 1.00901 * 111.00067 * 303.95263 * 13 12 2 35 35 H 1.09001 * 109.46798 * 300.00327 * 14 13 12 36 36 H 1.08998 * 109.46961 * 60.00043 * 14 13 12 37 37 H 1.07991 * 119.90757 * 0.02562 * 16 15 14 38 38 H 1.07999 * 120.07284 * 180.27507 * 17 16 15 39 39 H 0.96696 * 117.00216 * 180.02562 * 21 19 18 40 40 H 1.08010 * 119.92981 * 180.02562 * 24 22 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6532 -1.5886 -1.1312 6 6 1.6993 -0.2395 -2.4827 7 7 0.9436 0.8300 -2.6034 8 14 2.3225 -1.1198 -4.0078 9 1 1.8280 -2.5200 -4.0080 10 1 1.8279 -0.4195 -5.2203 11 1 3.8075 -1.1192 -4.0076 12 6 2.0399 -0.7213 1.2493 13 7 1.5503 -0.0286 2.4487 14 6 2.0218 -0.6944 3.6704 15 6 1.5001 0.0422 4.8771 16 6 2.2444 1.0692 5.4320 17 6 1.7715 1.7518 6.5327 18 6 0.5428 1.3981 7.0953 19 6 0.0328 2.1205 8.2776 20 8 -1.0358 1.8102 8.7648 21 8 0.7526 3.1240 8.8161 22 6 -0.2011 0.3567 6.5340 23 17 -1.7292 -0.0923 7.2248 24 6 0.2834 -0.3150 5.4284 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5137 -0.8901 27 1 -0.3634 -1.0277 0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6767 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 0.7095 1.1616 -3.4845 32 1 3.1300 -0.7209 1.2495 33 1 1.6766 -1.7489 1.2494 34 1 1.8198 0.9437 2.4401 35 1 1.6586 -1.7220 3.6874 36 1 3.1116 -0.6939 3.6870 37 1 3.1959 1.3396 4.9987 38 1 2.3516 2.5556 6.9614 39 1 0.3779 3.5670 9.5896 40 1 -0.2901 -1.1198 4.9927 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001590615198.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:35:34 Heat of formation + Delta-G solvation = -88.565761 kcal Electronic energy + Delta-G solvation = -22859.146018 eV Core-core repulsion = 19277.887384 eV Total energy + Delta-G solvation = -3581.258634 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -41.47287 -40.07945 -38.54631 -37.56648 -36.98045 -35.74360 -33.47258 -32.03252 -31.69468 -27.78172 -27.46760 -27.20298 -25.21245 -23.98280 -23.59071 -21.91574 -20.32036 -19.18198 -18.53414 -17.91243 -17.23891 -16.79045 -16.70414 -16.53346 -15.93091 -15.59463 -15.57485 -14.96908 -14.76903 -14.46310 -14.15040 -14.04255 -13.86030 -13.47884 -13.03633 -12.92299 -12.79475 -12.61577 -12.52763 -12.46829 -12.43978 -12.35575 -12.24398 -12.07274 -12.03161 -11.27364 -11.09776 -10.92165 -10.57597 -10.31640 -10.10041 -9.85820 -9.14163 -7.94324 -6.11154 -0.53663 0.13986 1.03260 1.44995 1.45257 1.46537 1.52563 2.00468 2.47619 2.54110 3.28144 3.47920 3.60794 3.81619 3.97967 4.11309 4.20942 4.34694 4.56743 4.59592 4.71504 4.76959 4.84869 4.92406 5.02330 5.07022 5.09848 5.21136 5.33065 5.41227 5.45889 5.56594 5.57472 5.62570 5.72933 5.80712 6.16691 6.27019 6.37858 6.51502 6.64790 6.96756 6.99354 7.56727 9.03420 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.027728 B = 0.002624 C = 0.002554 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1009.552638 B =10667.419896 C =10961.531867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C 0.060 3.940 3 C -0.121 4.121 4 C -0.526 4.526 5 H 0.047 0.953 6 C 0.022 3.978 7 N -0.904 5.904 8 Si 0.942 3.058 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.274 1.274 12 C 0.090 3.910 13 N -0.685 5.685 14 C 0.091 3.909 15 C -0.026 4.026 16 C -0.120 4.120 17 C -0.038 4.038 18 C -0.144 4.144 19 C 0.526 3.474 20 O -0.525 6.525 21 O -0.502 6.502 22 C 0.005 3.995 23 Cl -0.049 7.049 24 C -0.109 4.109 25 H 0.033 0.967 26 H 0.045 0.955 27 H 0.010 0.990 28 H 0.020 0.980 29 H 0.052 0.948 30 H 0.034 0.966 31 H 0.256 0.744 32 H 0.018 0.982 33 H 0.052 0.948 34 H 0.342 0.658 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.161 0.839 38 H 0.171 0.829 39 H 0.434 0.566 40 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.166 2.742 21.703 22.104 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.059 3.941 3 C -0.179 4.179 4 C -0.565 4.565 5 H 0.065 0.935 6 C -0.177 4.177 7 N -0.543 5.543 8 Si 0.769 3.231 9 H -0.202 1.202 10 H -0.214 1.214 11 H -0.200 1.200 12 C -0.038 4.038 13 N -0.318 5.318 14 C -0.037 4.037 15 C -0.027 4.027 16 C -0.138 4.138 17 C -0.056 4.056 18 C -0.146 4.146 19 C 0.370 3.630 20 O -0.416 6.416 21 O -0.316 6.316 22 C -0.023 4.023 23 Cl -0.020 7.020 24 C -0.128 4.128 25 H 0.052 0.948 26 H 0.064 0.936 27 H 0.029 0.971 28 H 0.039 0.961 29 H 0.071 0.929 30 H 0.053 0.947 31 H 0.066 0.934 32 H 0.036 0.964 33 H 0.070 0.930 34 H 0.161 0.839 35 H 0.102 0.898 36 H 0.076 0.924 37 H 0.178 0.822 38 H 0.189 0.811 39 H 0.296 0.704 40 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges 2.220 2.211 21.419 21.647 hybrid contribution 0.466 -0.048 -0.598 0.760 sum 2.686 2.163 20.820 21.104 Atomic orbital electron populations 1.21485 0.98005 0.97697 0.99264 1.18138 0.92669 0.92457 0.90812 1.21665 0.97576 0.98744 0.99953 1.21442 1.31145 1.11986 0.91925 0.93456 1.25525 0.95360 0.95642 1.01166 1.69965 1.37437 1.23669 1.23258 0.85870 0.78708 0.78804 0.79721 1.20215 1.21389 1.19954 1.21834 0.95492 0.97217 0.89304 1.60559 1.63923 1.06619 1.00668 1.21017 0.98172 0.98037 0.86502 1.20158 0.92917 0.94899 0.94735 1.21487 1.01518 0.94871 0.95968 1.21655 0.92272 0.98003 0.93701 1.18989 0.98363 0.99360 0.97929 1.20684 0.81591 0.77977 0.82724 1.90975 1.23069 1.65623 1.61942 1.84485 1.52227 1.45982 1.48922 1.21141 0.88890 0.96356 0.95867 1.98409 1.28331 1.91498 1.83712 1.21016 0.96538 1.01136 0.94153 0.94796 0.93573 0.97123 0.96089 0.92875 0.94687 0.93418 0.96409 0.92972 0.83857 0.89776 0.92421 0.82178 0.81117 0.70364 0.83833 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.06 8.09 71.98 0.58 -4.48 16 2 C 0.06 2.74 0.57 -52.93 -0.03 2.71 16 3 C -0.12 -5.41 7.92 71.98 0.57 -4.84 16 4 C -0.53 -27.45 8.01 25.60 0.21 -27.25 16 5 H 0.05 2.45 7.74 -2.91 -0.02 2.42 16 6 C 0.02 1.17 5.15 84.66 0.44 1.61 16 7 N -0.90 -49.82 9.35 21.45 0.20 -49.62 16 8 Si 0.94 42.51 29.54 68.60 2.03 44.54 16 9 H -0.28 -12.32 7.11 99.48 0.71 -11.61 16 10 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 11 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 12 C 0.09 3.37 4.59 86.30 0.40 3.76 16 13 N -0.69 -20.71 5.70 -517.92 -2.95 -23.66 16 14 C 0.09 2.07 5.80 85.55 0.50 2.57 16 15 C -0.03 -0.54 5.40 -19.81 -0.11 -0.64 16 16 C -0.12 -1.97 9.68 22.23 0.22 -1.75 16 17 C -0.04 -0.61 9.62 22.54 0.22 -0.39 16 18 C -0.14 -3.02 5.88 -20.08 -0.12 -3.14 16 19 C 0.53 10.78 8.26 70.30 0.58 11.36 16 20 O -0.53 -13.79 14.76 19.91 0.29 -13.50 16 21 O -0.50 -6.31 12.68 -56.34 -0.71 -7.02 16 22 C 0.00 0.11 6.35 22.61 0.14 0.25 16 23 Cl -0.05 -1.26 26.03 -2.72 -0.07 -1.33 16 24 C -0.11 -2.47 9.46 22.25 0.21 -2.26 16 25 H 0.03 1.47 7.60 -2.39 -0.02 1.45 16 26 H 0.05 2.44 6.07 -2.39 -0.01 2.43 16 27 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 28 H 0.02 0.88 8.14 -2.39 -0.02 0.86 16 29 H 0.05 2.71 6.07 -2.39 -0.01 2.69 16 30 H 0.03 1.35 6.57 -2.39 -0.02 1.33 16 31 H 0.26 13.70 8.31 -92.70 -0.77 12.93 16 32 H 0.02 0.65 8.14 -2.39 -0.02 0.63 16 33 H 0.05 2.00 8.14 -2.39 -0.02 1.98 16 34 H 0.34 10.09 6.76 -89.69 -0.61 9.49 16 35 H 0.08 1.90 8.08 -2.39 -0.02 1.88 16 36 H 0.06 1.15 8.08 -2.39 -0.02 1.13 16 37 H 0.16 1.88 8.06 -2.92 -0.02 1.85 16 38 H 0.17 1.81 7.61 -2.91 -0.02 1.79 16 39 H 0.43 1.61 9.11 -74.06 -0.67 0.93 16 40 H 0.14 3.19 8.06 -2.91 -0.02 3.17 16 Total: -1.00 -63.22 344.86 2.38 -60.84 By element: Atomic # 1 Polarization: 12.45 SS G_CDS: -0.20 Total: 12.24 kcal Atomic # 6 Polarization: -26.30 SS G_CDS: 3.80 Total: -22.50 kcal Atomic # 7 Polarization: -70.52 SS G_CDS: -2.75 Total: -73.28 kcal Atomic # 8 Polarization: -20.09 SS G_CDS: -0.42 Total: -20.52 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Atomic # 17 Polarization: -1.26 SS G_CDS: -0.07 Total: -1.33 kcal Total: -63.22 2.38 -60.84 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001590615198.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.722 kcal (2) G-P(sol) polarization free energy of solvation -63.223 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -90.944 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.844 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds