Wall clock time and date at job start Tue Mar 31 2020 09:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46707 * 2 1 4 4 O 1.42898 * 109.47190 * 120.00216 * 2 1 3 5 5 C 1.35900 * 117.00309 * 275.32929 * 4 2 1 6 6 C 1.38755 * 120.04867 * 185.35867 * 5 4 2 7 7 C 1.38130 * 119.96938 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.06988 * 359.97438 * 7 6 5 9 9 C 1.38369 * 120.09491 * 0.02562 * 8 7 6 10 10 Cl 1.73602 * 119.98350 * 180.02562 * 9 8 7 11 11 C 1.38274 * 120.03068 * 359.72763 * 9 8 7 12 12 C 1.50699 * 109.46689 * 240.00625 * 2 1 3 13 13 O 1.21287 * 119.99793 * 244.99546 * 12 2 1 14 14 N 1.34779 * 120.00416 * 64.99978 * 12 2 1 15 15 C 1.46498 * 120.00064 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46810 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46862 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47261 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99938 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00140 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99527 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47242 * 89.99877 * 22 20 18 24 24 H 1.48506 * 109.46577 * 209.99922 * 22 20 18 25 25 H 1.48498 * 109.46913 * 329.99255 * 22 20 18 26 26 H 1.08996 * 109.47599 * 59.99339 * 1 2 3 27 27 H 1.09003 * 109.46978 * 299.99465 * 1 2 3 28 28 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.01825 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.96651 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.95234 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.03562 * 180.29620 * 11 9 8 33 33 H 0.96999 * 119.99463 * 359.97438 * 14 12 2 34 34 H 1.08996 * 109.47283 * 300.00168 * 15 14 12 35 35 H 1.09006 * 109.46584 * 60.00703 * 15 14 12 36 36 H 1.08996 * 109.47474 * 300.00221 * 16 15 14 37 37 H 1.08997 * 109.46961 * 60.00852 * 16 15 14 38 38 H 1.09002 * 109.47327 * 300.00251 * 17 16 15 39 39 H 1.09000 * 109.47428 * 60.00240 * 17 16 15 40 40 H 0.97010 * 119.99985 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1060 0.0608 2.3058 6 6 2.6650 -0.4982 3.4462 7 6 2.7650 0.2496 4.6033 8 6 2.3091 1.5548 4.6262 9 6 1.7513 2.1149 3.4906 10 17 1.1805 3.7541 3.5224 11 6 1.6538 1.3717 2.3287 12 6 2.0323 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7918 -0.1940 -2.4521 15 6 2.2805 -0.8842 -3.6483 16 6 1.8751 -0.0943 -4.8943 17 6 2.3849 -0.8155 -6.1436 18 6 1.9861 -0.0372 -7.3709 19 1 1.4248 0.8799 -7.2699 20 6 2.3370 -0.4965 -8.6226 21 7 3.0202 -1.6135 -8.7456 22 14 1.8433 0.4688 -10.1439 23 1 2.9092 1.4475 -10.4767 24 1 1.6553 -0.4651 -11.2832 25 1 0.5726 1.1909 -9.8811 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.0217 -1.5174 3.4292 30 1 3.1997 -0.1856 5.4910 31 1 2.3879 2.1376 5.5321 32 1 1.2228 1.8104 1.4409 33 1 1.2951 0.6346 -2.5391 34 1 3.3668 -0.9621 -3.6045 35 1 1.8461 -1.8829 -3.6944 36 1 0.7887 -0.0168 -4.9378 37 1 2.3091 0.9045 -4.8484 38 1 3.4713 -0.8934 -6.1002 39 1 1.9507 -1.8142 -6.1893 40 1 3.2667 -1.9368 -9.6263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000070940607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:11 Heat of formation + Delta-G solvation = -72.196414 kcal Electronic energy + Delta-G solvation = -22142.506841 eV Core-core repulsion = 18561.958036 eV Total energy + Delta-G solvation = -3580.548806 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95945 -39.49819 -37.90421 -36.70062 -35.47902 -33.54158 -32.56385 -31.26731 -30.92699 -30.03019 -26.93238 -25.02892 -23.54795 -23.01660 -22.30971 -20.82057 -19.99086 -18.90225 -17.55150 -16.62835 -16.38626 -16.19745 -16.04415 -15.35720 -15.19693 -15.12737 -14.49623 -14.35913 -14.03456 -13.94262 -13.47314 -13.45813 -12.83211 -12.46224 -12.31604 -12.27302 -12.05821 -11.89887 -11.74947 -11.46837 -11.37208 -11.19856 -10.93546 -10.79412 -10.63169 -9.93544 -9.92697 -9.44765 -9.32422 -9.16141 -8.92809 -8.65062 -8.40600 -6.05041 -4.08438 0.69585 0.88328 1.67101 2.38059 2.53951 3.19911 3.28590 3.35097 3.37383 3.44712 4.26343 4.33085 4.41306 4.51343 4.56683 4.58415 4.65089 4.86458 5.03530 5.15494 5.24165 5.26293 5.30821 5.61805 5.68325 5.69863 5.70091 5.79137 5.91895 6.08148 6.15393 6.33550 6.52339 6.72208 6.91625 6.93461 7.51883 7.59309 7.71174 7.93140 8.19041 8.34083 8.98119 9.55988 11.06168 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002095 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.418049 B =13362.899024 C =14178.611105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C 0.064 3.936 3 H 0.099 0.901 4 O -0.278 6.278 5 C 0.148 3.852 6 C -0.145 4.145 7 C -0.067 4.067 8 C -0.152 4.152 9 C 0.006 3.994 10 Cl -0.067 7.067 11 C -0.208 4.208 12 C 0.513 3.487 13 O -0.519 6.519 14 N -0.720 5.720 15 C 0.117 3.883 16 C -0.121 4.121 17 C 0.024 3.976 18 C -0.523 4.523 19 H 0.055 0.945 20 C 0.057 3.943 21 N -0.893 5.893 22 Si 0.893 3.107 23 H -0.280 1.280 24 H -0.286 1.286 25 H -0.274 1.274 26 H 0.083 0.917 27 H 0.074 0.926 28 H 0.077 0.923 29 H 0.140 0.860 30 H 0.140 0.860 31 H 0.134 0.866 32 H 0.141 0.859 33 H 0.399 0.601 34 H 0.067 0.933 35 H 0.067 0.933 36 H 0.055 0.945 37 H 0.055 0.945 38 H 0.019 0.981 39 H 0.019 0.981 40 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.491 7.935 28.173 29.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C 0.004 3.996 3 H 0.116 0.884 4 O -0.190 6.190 5 C 0.102 3.898 6 C -0.164 4.164 7 C -0.085 4.085 8 C -0.171 4.171 9 C -0.021 4.021 10 Cl -0.038 7.038 11 C -0.227 4.227 12 C 0.296 3.704 13 O -0.394 6.394 14 N -0.372 5.372 15 C -0.005 4.005 16 C -0.159 4.159 17 C -0.014 4.014 18 C -0.562 4.562 19 H 0.074 0.926 20 C -0.145 4.145 21 N -0.532 5.532 22 Si 0.721 3.279 23 H -0.206 1.206 24 H -0.212 1.212 25 H -0.199 1.199 26 H 0.102 0.898 27 H 0.093 0.907 28 H 0.097 0.903 29 H 0.158 0.842 30 H 0.158 0.842 31 H 0.152 0.848 32 H 0.159 0.841 33 H 0.233 0.767 34 H 0.085 0.915 35 H 0.085 0.915 36 H 0.074 0.926 37 H 0.074 0.926 38 H 0.038 0.962 39 H 0.038 0.962 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.959 6.978 28.060 29.185 hybrid contribution -0.607 1.284 -1.067 1.776 sum -4.566 8.262 26.993 28.596 Atomic orbital electron populations 1.22352 0.92311 1.04769 1.04021 1.22320 0.96008 0.97098 0.84197 0.88351 1.86266 1.80574 1.36666 1.15468 1.18939 0.94300 0.89471 0.87126 1.20624 1.02874 1.01961 0.90918 1.20948 0.97081 0.92930 0.97521 1.20987 1.02147 0.96245 0.97717 1.20648 0.99891 0.86426 0.95133 1.98387 1.87545 1.19152 1.98738 1.21176 1.08027 0.94374 0.99135 1.19937 0.80587 0.85751 0.84105 1.90755 1.39362 1.22945 1.86332 1.46092 1.57564 1.27861 1.05691 1.21721 0.99510 0.96564 0.82688 1.21899 1.00637 0.99148 0.94181 1.19033 0.96707 0.95729 0.89942 1.21187 1.35419 1.08511 0.91041 0.92633 1.25034 0.95159 0.95068 0.99220 1.69962 1.38584 1.21018 1.23633 0.86577 0.78896 0.79773 0.82639 1.20640 1.21189 1.19895 0.89815 0.90669 0.90350 0.84222 0.84206 0.84764 0.84095 0.76691 0.91501 0.91473 0.92608 0.92629 0.96237 0.96215 0.92885 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.43 9.12 37.16 0.34 -1.09 16 2 C 0.06 0.67 2.64 -27.88 -0.07 0.60 16 3 H 0.10 0.82 6.31 -51.93 -0.33 0.49 16 4 O -0.28 -3.44 9.34 -39.29 -0.37 -3.81 16 5 C 0.15 1.52 6.60 -39.22 -0.26 1.26 16 6 C -0.15 -1.28 9.99 -39.43 -0.39 -1.68 16 7 C -0.07 -0.46 10.04 -39.61 -0.40 -0.85 16 8 C -0.15 -1.11 9.83 -39.52 -0.39 -1.49 16 9 C 0.01 0.05 6.32 -39.52 -0.25 -0.20 16 10 Cl -0.07 -0.54 28.95 -51.86 -1.50 -2.04 16 11 C -0.21 -1.86 8.02 -39.40 -0.32 -2.17 16 12 C 0.51 7.36 7.18 -10.99 -0.08 7.28 16 13 O -0.52 -9.90 16.51 -14.31 -0.24 -10.13 16 14 N -0.72 -9.53 5.52 -60.29 -0.33 -9.86 16 15 C 0.12 1.97 5.67 -4.04 -0.02 1.95 16 16 C -0.12 -2.25 5.27 -26.73 -0.14 -2.39 16 17 C 0.02 0.58 4.97 -27.88 -0.14 0.45 16 18 C -0.52 -14.36 9.11 -34.44 -0.31 -14.68 16 19 H 0.06 1.46 7.74 -52.49 -0.41 1.06 16 20 C 0.06 1.60 5.46 -17.82 -0.10 1.50 16 21 N -0.89 -26.55 13.29 55.43 0.74 -25.81 16 22 Si 0.89 21.25 29.54 -169.99 -5.02 16.22 16 23 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 24 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.27 -6.35 7.11 56.52 0.40 -5.95 16 26 H 0.08 0.53 7.92 -51.93 -0.41 0.12 16 27 H 0.07 0.52 6.90 -51.93 -0.36 0.16 16 28 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 29 H 0.14 1.12 8.06 -52.49 -0.42 0.70 16 30 H 0.14 0.57 8.06 -52.49 -0.42 0.15 16 31 H 0.13 0.73 8.06 -52.48 -0.42 0.31 16 32 H 0.14 1.07 5.43 -52.49 -0.28 0.79 16 33 H 0.40 3.98 8.26 -40.82 -0.34 3.64 16 34 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 35 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 36 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 37 H 0.05 0.99 8.14 -51.93 -0.42 0.57 16 38 H 0.02 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 40 H 0.26 7.33 8.31 -40.82 -0.34 7.00 16 LS Contribution 356.71 15.07 5.38 5.38 Total: -1.00 -33.12 356.71 -9.37 -42.49 By element: Atomic # 1 Polarization: 4.58 SS G_CDS: -5.49 Total: -0.91 kcal Atomic # 6 Polarization: -8.99 SS G_CDS: -2.53 Total: -11.52 kcal Atomic # 7 Polarization: -36.07 SS G_CDS: 0.40 Total: -35.67 kcal Atomic # 8 Polarization: -13.34 SS G_CDS: -0.60 Total: -13.94 kcal Atomic # 14 Polarization: 21.25 SS G_CDS: -5.02 Total: 16.22 kcal Atomic # 17 Polarization: -0.54 SS G_CDS: -1.50 Total: -2.04 kcal Total LS contribution 5.38 Total: 5.38 kcal Total: -33.12 -9.37 -42.49 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.710 kcal (2) G-P(sol) polarization free energy of solvation -33.120 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.830 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.366 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.486 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.196 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds