Wall clock time and date at job start Tue Mar 31 2020 09:47:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.46707 * 2 1 4 4 O 1.42898 * 109.47190 * 120.00216 * 2 1 3 5 5 C 1.35900 * 117.00309 * 275.32929 * 4 2 1 6 6 C 1.38755 * 120.04867 * 185.35867 * 5 4 2 7 7 C 1.38130 * 119.96938 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.06988 * 359.97438 * 7 6 5 9 9 C 1.38369 * 120.09491 * 0.02562 * 8 7 6 10 10 Cl 1.73602 * 119.98350 * 180.02562 * 9 8 7 11 11 C 1.38274 * 120.03068 * 359.72763 * 9 8 7 12 12 C 1.50699 * 109.46689 * 240.00625 * 2 1 3 13 13 O 1.21287 * 119.99793 * 244.99546 * 12 2 1 14 14 N 1.34779 * 120.00416 * 64.99978 * 12 2 1 15 15 C 1.46498 * 120.00064 * 179.97438 * 14 12 2 16 16 C 1.53000 * 109.46810 * 179.97438 * 15 14 12 17 17 C 1.52997 * 109.46862 * 180.02562 * 16 15 14 18 18 C 1.50703 * 109.47261 * 180.02562 * 17 16 15 19 19 H 1.08001 * 119.99817 * 359.97438 * 18 17 16 20 20 C 1.37877 * 119.99938 * 180.02562 * 18 17 16 21 21 N 1.31507 * 120.00140 * 359.97438 * 20 18 17 22 22 Si 1.86809 * 119.99527 * 180.02562 * 20 18 17 23 23 H 1.48494 * 109.47242 * 89.99877 * 22 20 18 24 24 H 1.48506 * 109.46577 * 209.99922 * 22 20 18 25 25 H 1.48498 * 109.46913 * 329.99255 * 22 20 18 26 26 H 1.08996 * 109.47599 * 59.99339 * 1 2 3 27 27 H 1.09003 * 109.46978 * 299.99465 * 1 2 3 28 28 H 1.09004 * 109.47189 * 179.97438 * 1 2 3 29 29 H 1.08001 * 120.01825 * 0.02562 * 6 5 4 30 30 H 1.08002 * 119.96651 * 179.97438 * 7 6 5 31 31 H 1.08004 * 119.95234 * 179.97438 * 8 7 6 32 32 H 1.08000 * 120.03562 * 180.29620 * 11 9 8 33 33 H 0.96999 * 119.99463 * 359.97438 * 14 12 2 34 34 H 1.08996 * 109.47283 * 300.00168 * 15 14 12 35 35 H 1.09006 * 109.46584 * 60.00703 * 15 14 12 36 36 H 1.08996 * 109.47474 * 300.00221 * 16 15 14 37 37 H 1.08997 * 109.46961 * 60.00852 * 16 15 14 38 38 H 1.09002 * 109.47327 * 300.00251 * 17 16 15 39 39 H 1.09000 * 109.47428 * 60.00240 * 17 16 15 40 40 H 0.97010 * 119.99985 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0064 -0.6737 1.1667 5 6 2.1060 0.0608 2.3058 6 6 2.6650 -0.4982 3.4462 7 6 2.7650 0.2496 4.6033 8 6 2.3091 1.5548 4.6262 9 6 1.7513 2.1149 3.4906 10 17 1.1805 3.7541 3.5224 11 6 1.6538 1.3717 2.3287 12 6 2.0323 -0.7103 -1.2306 13 8 2.6530 -1.7466 -1.1217 14 7 1.7918 -0.1940 -2.4521 15 6 2.2805 -0.8842 -3.6483 16 6 1.8751 -0.0943 -4.8943 17 6 2.3849 -0.8155 -6.1436 18 6 1.9861 -0.0372 -7.3709 19 1 1.4248 0.8799 -7.2699 20 6 2.3370 -0.4965 -8.6226 21 7 3.0202 -1.6135 -8.7456 22 14 1.8433 0.4688 -10.1439 23 1 2.9092 1.4475 -10.4767 24 1 1.6553 -0.4651 -11.2832 25 1 0.5726 1.1909 -9.8811 26 1 -0.3634 0.5139 -0.8899 27 1 -0.3633 0.5138 0.8901 28 1 -0.3634 -1.0277 -0.0005 29 1 3.0217 -1.5174 3.4292 30 1 3.1997 -0.1856 5.4910 31 1 2.3879 2.1376 5.5321 32 1 1.2228 1.8104 1.4409 33 1 1.2951 0.6346 -2.5391 34 1 3.3668 -0.9621 -3.6045 35 1 1.8461 -1.8829 -3.6944 36 1 0.7887 -0.0168 -4.9378 37 1 2.3091 0.9045 -4.8484 38 1 3.4713 -0.8934 -6.1002 39 1 1.9507 -1.8142 -6.1893 40 1 3.2667 -1.9368 -9.6263 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070940607.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:47:11 Heat of formation + Delta-G solvation = -91.913006 kcal Electronic energy + Delta-G solvation = -22143.361817 eV Core-core repulsion = 18561.958036 eV Total energy + Delta-G solvation = -3581.403781 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 311.108 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.78821 -40.51017 -38.67002 -37.33333 -36.96507 -35.28498 -33.74827 -32.53967 -31.74295 -30.71335 -28.64174 -26.06662 -24.86155 -23.82087 -23.21440 -22.35618 -21.22374 -19.62050 -18.71892 -18.30076 -17.43810 -17.04953 -16.90474 -16.56568 -16.36240 -16.28335 -15.87668 -15.39933 -15.06758 -14.80966 -14.29956 -14.27171 -14.20788 -13.77359 -13.58654 -13.43572 -13.15828 -12.83762 -12.76958 -12.67589 -12.55343 -12.39248 -12.14637 -11.95894 -11.87847 -11.68056 -11.58386 -11.24346 -10.87348 -10.55465 -10.21047 -9.93683 -9.32308 -8.19500 -6.30912 0.08476 0.26289 1.06019 1.41099 1.41953 1.43293 1.48652 1.54366 2.40880 2.50550 2.58765 3.14502 3.44067 3.62919 3.77488 3.83914 3.93166 4.08403 4.13677 4.20132 4.27096 4.48204 4.53608 4.57822 4.63802 4.67560 4.93133 4.93896 5.07207 5.08425 5.16893 5.20144 5.33548 5.34329 5.52023 5.58764 5.70615 5.84366 6.17644 6.22267 6.45965 6.86934 7.09764 7.38818 8.92548 Molecular weight = 311.11amu Principal moments of inertia in cm(-1) A = 0.024397 B = 0.002095 C = 0.001974 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1147.418049 B =13362.899024 C =14178.611105 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.070 3.930 3 H 0.125 0.875 4 O -0.307 6.307 5 C 0.126 3.874 6 C -0.159 4.159 7 C -0.059 4.059 8 C -0.150 4.150 9 C -0.005 4.005 10 Cl -0.065 7.065 11 C -0.210 4.210 12 C 0.511 3.489 13 O -0.574 6.574 14 N -0.704 5.704 15 C 0.130 3.870 16 C -0.101 4.101 17 C 0.022 3.978 18 C -0.539 4.539 19 H 0.068 0.932 20 C -0.005 4.005 21 N -0.935 5.935 22 Si 0.967 3.033 23 H -0.273 1.273 24 H -0.286 1.286 25 H -0.259 1.259 26 H 0.105 0.895 27 H 0.091 0.909 28 H 0.063 0.937 29 H 0.139 0.861 30 H 0.170 0.830 31 H 0.155 0.845 32 H 0.153 0.847 33 H 0.419 0.581 34 H 0.050 0.950 35 H 0.052 0.948 36 H 0.072 0.928 37 H 0.071 0.929 38 H -0.009 1.009 39 H -0.008 1.008 40 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.774 10.506 29.370 31.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.011 3.989 3 H 0.143 0.857 4 O -0.220 6.220 5 C 0.080 3.920 6 C -0.178 4.178 7 C -0.077 4.077 8 C -0.169 4.169 9 C -0.032 4.032 10 Cl -0.036 7.036 11 C -0.229 4.229 12 C 0.296 3.704 13 O -0.452 6.452 14 N -0.357 5.357 15 C 0.006 3.994 16 C -0.139 4.139 17 C -0.016 4.016 18 C -0.577 4.577 19 H 0.086 0.914 20 C -0.202 4.202 21 N -0.576 5.576 22 Si 0.791 3.209 23 H -0.199 1.199 24 H -0.212 1.212 25 H -0.183 1.183 26 H 0.124 0.876 27 H 0.109 0.891 28 H 0.082 0.918 29 H 0.157 0.843 30 H 0.187 0.813 31 H 0.173 0.827 32 H 0.170 0.830 33 H 0.257 0.743 34 H 0.069 0.931 35 H 0.070 0.930 36 H 0.090 0.910 37 H 0.089 0.911 38 H 0.010 0.990 39 H 0.010 0.990 40 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -5.275 9.604 29.277 31.261 hybrid contribution -0.171 0.471 -1.347 1.438 sum -5.446 10.075 27.930 30.187 Atomic orbital electron populations 1.22370 0.90198 1.04430 1.05910 1.22345 0.97360 0.97205 0.82007 0.85723 1.86219 1.81386 1.38016 1.16392 1.19146 0.95846 0.90171 0.86834 1.20871 1.03086 1.02409 0.91429 1.21277 0.96118 0.92610 0.97729 1.21317 1.00984 0.96467 0.98103 1.20809 1.00279 0.86638 0.95459 1.98388 1.87540 1.18892 1.98736 1.21257 1.07923 0.93859 0.99858 1.20684 0.79356 0.85091 0.85233 1.90730 1.41849 1.25508 1.87153 1.45798 1.57226 1.28232 1.04471 1.21292 0.98490 0.95998 0.83608 1.21599 1.01388 0.99007 0.91892 1.18957 0.94913 0.95032 0.92673 1.21683 1.35088 1.08974 0.91992 0.91370 1.26035 0.95133 0.96078 1.03000 1.70113 1.40055 1.22947 1.24467 0.85417 0.79122 0.78221 0.78094 1.19876 1.21180 1.18314 0.87594 0.89055 0.91819 0.84280 0.81258 0.82731 0.83000 0.74299 0.93139 0.93002 0.90954 0.91084 0.99042 0.98953 0.92853 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.44 9.12 71.98 0.66 -1.78 16 2 C 0.07 1.40 2.64 29.85 0.08 1.48 16 3 H 0.13 1.79 6.31 -2.39 -0.02 1.77 16 4 O -0.31 -7.58 9.34 -73.44 -0.69 -8.27 16 5 C 0.13 2.48 6.60 22.50 0.15 2.63 16 6 C -0.16 -2.69 9.99 22.37 0.22 -2.46 16 7 C -0.06 -0.69 10.04 22.25 0.22 -0.47 16 8 C -0.15 -1.82 9.83 22.31 0.22 -1.60 16 9 C -0.01 -0.08 6.32 22.31 0.14 0.07 16 10 Cl -0.06 -0.90 28.95 -2.72 -0.08 -0.98 16 11 C -0.21 -3.39 8.02 22.39 0.18 -3.21 16 12 C 0.51 14.55 7.18 87.66 0.63 15.18 16 13 O -0.57 -22.65 16.51 15.94 0.26 -22.39 16 14 N -0.70 -17.87 5.52 -463.05 -2.55 -20.43 16 15 C 0.13 4.40 5.67 86.38 0.49 4.89 16 16 C -0.10 -3.70 5.27 30.59 0.16 -3.54 16 17 C 0.02 1.12 4.97 29.85 0.15 1.27 16 18 C -0.54 -29.56 9.11 25.60 0.23 -29.33 16 19 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 20 C 0.00 -0.28 5.46 84.66 0.46 0.19 16 21 N -0.94 -56.86 13.29 21.45 0.28 -56.57 16 22 Si 0.97 43.31 29.54 68.60 2.03 45.34 16 23 H -0.27 -11.85 7.11 99.48 0.71 -11.15 16 24 H -0.29 -12.71 7.11 99.48 0.71 -12.00 16 25 H -0.26 -10.89 7.11 99.48 0.71 -10.19 16 26 H 0.11 1.01 7.92 -2.39 -0.02 0.99 16 27 H 0.09 1.03 6.90 -2.39 -0.02 1.02 16 28 H 0.06 1.11 8.14 -2.38 -0.02 1.09 16 29 H 0.14 2.25 8.06 -2.91 -0.02 2.22 16 30 H 0.17 0.87 8.06 -2.91 -0.02 0.85 16 31 H 0.16 1.20 8.06 -2.91 -0.02 1.18 16 32 H 0.15 1.95 5.43 -2.91 -0.02 1.94 16 33 H 0.42 7.25 8.26 -92.71 -0.77 6.48 16 34 H 0.05 1.88 8.14 -2.39 -0.02 1.86 16 35 H 0.05 1.92 8.14 -2.38 -0.02 1.90 16 36 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 37 H 0.07 2.40 8.14 -2.39 -0.02 2.38 16 38 H -0.01 -0.49 8.14 -2.39 -0.02 -0.51 16 39 H -0.01 -0.44 8.14 -2.39 -0.02 -0.46 16 40 H 0.26 15.04 8.31 -92.70 -0.77 14.27 16 Total: -1.00 -74.01 356.71 3.54 -70.47 By element: Atomic # 1 Polarization: 9.22 SS G_CDS: 0.29 Total: 9.51 kcal Atomic # 6 Polarization: -20.68 SS G_CDS: 3.99 Total: -16.69 kcal Atomic # 7 Polarization: -74.73 SS G_CDS: -2.27 Total: -77.00 kcal Atomic # 8 Polarization: -30.23 SS G_CDS: -0.42 Total: -30.66 kcal Atomic # 14 Polarization: 43.31 SS G_CDS: 2.03 Total: 45.34 kcal Atomic # 17 Polarization: -0.90 SS G_CDS: -0.08 Total: -0.98 kcal Total: -74.01 3.54 -70.47 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070940607.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -21.440 kcal (2) G-P(sol) polarization free energy of solvation -74.012 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -95.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.539 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.473 kcal (6) G-S(sol) free energy of system = (1) + (5) -91.913 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds