Wall clock time and date at job start Tue Mar 31 2020 10:52:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38288 * 119.92367 * 2 1 4 4 C 1.38108 * 120.07366 * 179.74476 * 3 2 1 5 5 C 1.38893 * 119.92360 * 0.25656 * 4 3 2 6 6 N 1.39814 * 120.07143 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99998 * 235.96795 * 6 5 4 8 8 C 1.50695 * 109.46994 * 90.00198 * 7 6 5 9 9 H 1.08003 * 120.00558 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00289 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99516 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00381 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47403 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47257 * 120.00087 * 12 10 8 15 15 H 1.48502 * 109.47337 * 240.00023 * 12 10 8 16 16 C 1.34775 * 120.00182 * 55.96909 * 6 5 4 17 17 O 1.21793 * 119.99837 * 5.57914 * 16 6 5 18 18 C 1.41500 * 120.00404 * 185.57493 * 16 6 5 19 19 C 1.35650 * 120.00096 * 179.97438 * 18 16 6 20 20 C 1.41600 * 119.99696 * 180.02562 * 19 18 16 21 21 C 1.37953 * 126.10109 * 180.02562 * 20 19 18 22 22 C 1.40315 * 106.53044 * 180.02562 * 21 20 19 23 23 C 1.35151 * 107.20216 * 359.97438 * 22 21 20 24 24 O 1.34022 * 109.03668 * 359.73578 * 23 22 21 25 25 C 1.38899 * 119.85902 * 0.02562 * 5 4 3 26 26 C 1.38107 * 119.92098 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47094 * 90.00436 * 1 2 3 28 28 H 1.09002 * 109.46723 * 209.99987 * 1 2 3 29 29 H 1.08997 * 109.47381 * 329.99933 * 1 2 3 30 30 H 1.08008 * 119.96210 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.03616 * 180.27390 * 4 3 2 32 32 H 1.09000 * 109.46850 * 210.00065 * 7 6 5 33 33 H 1.08994 * 109.47101 * 330.00076 * 7 6 5 34 34 H 0.96998 * 120.00127 * 179.97438 * 11 10 8 35 35 H 1.08001 * 119.99796 * 0.02562 * 18 16 6 36 36 H 1.08001 * 120.00108 * 0.02562 * 19 18 16 37 37 H 1.08000 * 126.73598 * 359.97438 * 21 20 19 38 38 H 1.07997 * 126.39900 * 179.97438 * 22 21 20 39 39 H 1.08000 * 125.48363 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.04260 * 179.97438 * 25 5 4 41 41 H 1.08005 * 119.96068 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2022 0.0053 5 6 4.2739 0.0002 0.0053 6 7 5.6721 0.0003 0.0101 7 6 6.4083 -0.7076 -1.0402 8 6 6.6634 0.2287 -2.1931 9 1 6.3120 1.2490 -2.1482 10 6 7.3455 -0.2170 -3.3053 11 7 7.7739 -1.4592 -3.3599 12 14 7.6624 0.9439 -4.7340 13 1 7.0832 2.2764 -4.4271 14 1 9.1258 1.0772 -4.9484 15 1 7.0297 0.4008 -5.9629 16 6 6.3426 0.6515 0.9811 17 8 5.7347 1.1535 1.9094 18 6 7.7528 0.7520 0.9220 19 6 8.4276 1.4080 1.8990 20 6 9.8387 1.5089 1.8395 21 6 10.6478 2.1430 2.7596 22 6 11.9657 1.9949 2.3013 23 6 11.9112 1.2928 1.1477 24 8 10.6326 0.9970 0.8760 25 6 3.5780 -1.2019 -0.0006 26 6 2.1970 -1.1984 -0.0059 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6549 2.1328 0.0004 31 1 4.1160 2.1385 0.0098 32 1 7.3593 -1.0613 -0.6420 33 1 5.8204 -1.5579 -1.3859 34 1 8.2535 -1.7729 -4.1425 35 1 8.2918 0.3072 0.0986 36 1 7.8885 1.8532 2.7221 37 1 10.3292 2.6538 3.6562 38 1 12.8570 2.3715 2.7808 39 1 12.7616 1.0118 0.5442 40 1 4.1162 -2.1382 -0.0011 41 1 1.6552 -2.1327 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000060805607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:57 Heat of formation + Delta-G solvation = 24.908711 kcal Electronic energy + Delta-G solvation = -24646.657602 eV Core-core repulsion = 21072.752440 eV Total energy + Delta-G solvation = -3573.905162 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.37847 -40.05758 -38.28196 -35.32358 -33.89077 -32.93634 -32.75539 -31.43109 -30.52400 -28.81686 -27.52377 -26.09768 -23.91637 -23.15470 -22.01231 -21.75396 -21.15640 -19.93970 -18.33399 -17.48053 -16.71947 -16.58483 -16.11158 -15.89742 -15.08918 -14.99697 -14.55107 -14.51681 -14.11041 -13.69473 -13.46845 -13.17637 -13.01022 -12.87426 -12.68457 -12.46820 -12.22937 -12.07571 -11.93518 -11.66246 -11.31760 -11.22172 -11.02087 -10.80015 -10.67313 -10.37064 -10.21091 -9.87022 -9.79124 -9.37718 -8.66631 -8.60062 -8.47427 -7.80247 -7.37802 -6.21847 -4.29194 0.73141 1.76262 1.87060 2.30517 2.88796 3.13130 3.20684 3.28972 3.33826 3.77323 3.94367 4.23273 4.34412 4.88140 5.02141 5.07961 5.12110 5.18871 5.20088 5.41748 5.51428 5.57526 5.68603 5.74687 5.78823 5.84700 5.87869 5.92252 6.09719 6.14996 6.23912 6.27660 6.45161 6.52649 6.62390 6.71419 6.83461 6.95012 6.97355 7.12774 7.23841 7.26485 7.64766 7.73690 7.97498 8.12484 8.71912 8.86908 9.38192 10.84880 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004629 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.806283 B = 6047.758049 C = 8101.069436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.111 4.111 3 C -0.110 4.110 4 C -0.107 4.107 5 C 0.174 3.826 6 N -0.550 5.550 7 C 0.235 3.765 8 C -0.536 4.536 9 H 0.063 0.937 10 C 0.067 3.933 11 N -0.890 5.890 12 Si 0.897 3.103 13 H -0.271 1.271 14 H -0.281 1.281 15 H -0.282 1.282 16 C 0.550 3.450 17 O -0.561 6.561 18 C -0.164 4.164 19 C -0.029 4.029 20 C 0.014 3.986 21 C -0.185 4.185 22 C -0.221 4.221 23 C -0.028 4.028 24 O -0.157 6.157 25 C -0.126 4.126 26 C -0.109 4.109 27 H 0.065 0.935 28 H 0.061 0.939 29 H 0.061 0.939 30 H 0.118 0.882 31 H 0.119 0.881 32 H 0.044 0.956 33 H 0.043 0.957 34 H 0.266 0.734 35 H 0.150 0.850 36 H 0.155 0.845 37 H 0.152 0.848 38 H 0.149 0.851 39 H 0.203 0.797 40 H 0.123 0.877 41 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.606 3.120 8.344 8.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.112 4.112 3 C -0.128 4.128 4 C -0.127 4.127 5 C 0.082 3.918 6 N -0.274 5.274 7 C 0.117 3.883 8 C -0.575 4.575 9 H 0.081 0.919 10 C -0.136 4.136 11 N -0.528 5.528 12 Si 0.724 3.276 13 H -0.196 1.196 14 H -0.207 1.207 15 H -0.208 1.208 16 C 0.343 3.657 17 O -0.443 6.443 18 C -0.185 4.185 19 C -0.049 4.049 20 C -0.036 4.036 21 C -0.204 4.204 22 C -0.240 4.240 23 C -0.098 4.098 24 O -0.051 6.051 25 C -0.146 4.146 26 C -0.128 4.128 27 H 0.083 0.917 28 H 0.080 0.920 29 H 0.080 0.920 30 H 0.136 0.864 31 H 0.137 0.863 32 H 0.062 0.938 33 H 0.061 0.939 34 H 0.075 0.925 35 H 0.167 0.833 36 H 0.172 0.828 37 H 0.170 0.830 38 H 0.166 0.834 39 H 0.219 0.781 40 H 0.141 0.859 41 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -0.889 3.049 8.417 8.996 hybrid contribution 0.625 0.591 -1.021 1.336 sum -0.264 3.640 7.396 8.247 Atomic orbital electron populations 1.20698 0.91680 1.02135 1.01809 1.19771 0.95640 0.93238 1.02506 1.20776 0.93495 0.97263 1.01305 1.21084 0.94015 0.97435 1.00174 1.17597 0.83359 0.93151 0.97693 1.45914 1.03622 1.50999 1.26891 1.19670 0.91951 0.92558 0.84170 1.21460 1.36803 0.98011 1.01197 0.91919 1.24911 0.95102 0.95262 0.98349 1.69925 1.37696 1.15221 1.29954 0.86443 0.78066 0.81077 0.81978 1.19594 1.20723 1.20765 1.17016 0.88385 0.78521 0.81748 1.90770 1.70962 1.48475 1.34119 1.22529 0.94687 1.00858 1.00396 1.20566 0.87726 0.97493 0.99148 1.19963 0.91629 1.01951 0.90074 1.22229 0.92558 1.04365 1.01267 1.21694 0.98288 1.05772 0.98277 1.24262 0.84802 1.01747 0.98945 1.84210 1.16973 1.60307 1.43651 1.21097 0.94169 0.97326 1.01981 1.20747 0.93416 0.97266 1.01362 0.91660 0.91999 0.92023 0.86406 0.86321 0.93777 0.93928 0.92480 0.83256 0.82761 0.83016 0.83350 0.78078 0.85887 0.86277 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.20 10.01 36.01 0.36 -0.84 16 2 C -0.11 -1.69 5.88 -104.59 -0.62 -2.30 16 3 C -0.11 -1.80 9.69 -39.61 -0.38 -2.19 16 4 C -0.11 -2.10 8.91 -39.39 -0.35 -2.45 16 5 C 0.17 3.65 5.19 -83.73 -0.43 3.22 16 6 N -0.55 -12.22 2.56 -117.99 -0.30 -12.52 16 7 C 0.23 5.69 4.67 -5.19 -0.02 5.66 16 8 C -0.54 -14.16 9.25 -34.44 -0.32 -14.48 16 9 H 0.06 1.70 7.81 -52.48 -0.41 1.29 16 10 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 11 N -0.89 -24.52 13.29 55.43 0.74 -23.79 16 12 Si 0.90 20.85 29.54 -169.99 -5.02 15.82 16 13 H -0.27 -6.32 7.11 56.52 0.40 -5.91 16 14 H -0.28 -6.45 7.11 56.52 0.40 -6.05 16 15 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 16 C 0.55 11.91 7.21 -15.02 -0.11 11.80 16 17 O -0.56 -12.72 15.44 5.11 0.08 -12.64 16 18 C -0.16 -3.24 8.61 -39.27 -0.34 -3.58 16 19 C -0.03 -0.49 9.39 -39.23 -0.37 -0.86 16 20 C 0.01 0.22 6.84 -38.40 -0.26 -0.05 16 21 C -0.18 -2.42 10.90 -38.91 -0.42 -2.84 16 22 C -0.22 -2.58 10.87 -39.90 -0.43 -3.02 16 23 C -0.03 -0.35 12.06 29.63 0.36 0.01 16 24 O -0.16 -2.58 10.18 4.69 0.05 -2.54 16 25 C -0.13 -2.35 9.30 -39.38 -0.37 -2.72 16 26 C -0.11 -1.74 9.69 -39.61 -0.38 -2.12 16 27 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 28 H 0.06 0.61 8.09 -51.93 -0.42 0.19 16 29 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 30 H 0.12 1.62 8.06 -52.48 -0.42 1.19 16 31 H 0.12 2.37 8.03 -52.49 -0.42 1.95 16 32 H 0.04 1.09 6.34 -51.93 -0.33 0.76 16 33 H 0.04 1.08 7.29 -51.93 -0.38 0.70 16 34 H 0.27 6.94 8.31 -40.82 -0.34 6.60 16 35 H 0.15 3.18 5.82 -52.49 -0.31 2.87 16 36 H 0.16 2.39 7.46 -52.49 -0.39 2.00 16 37 H 0.15 1.60 8.06 -52.49 -0.42 1.18 16 38 H 0.15 1.29 8.06 -52.49 -0.42 0.87 16 39 H 0.20 1.73 8.06 -52.49 -0.42 1.31 16 40 H 0.12 2.20 7.78 -52.49 -0.41 1.79 16 41 H 0.12 1.55 8.06 -52.48 -0.42 1.13 16 LS Contribution 359.69 15.07 5.42 5.42 Total: -1.00 -30.69 359.69 -8.39 -39.08 By element: Atomic # 1 Polarization: 11.38 SS G_CDS: -5.16 Total: 6.23 kcal Atomic # 6 Polarization: -10.88 SS G_CDS: -4.19 Total: -15.07 kcal Atomic # 7 Polarization: -36.74 SS G_CDS: 0.43 Total: -36.31 kcal Atomic # 8 Polarization: -15.30 SS G_CDS: 0.13 Total: -15.18 kcal Atomic # 14 Polarization: 20.85 SS G_CDS: -5.02 Total: 15.82 kcal Total LS contribution 5.42 Total: 5.42 kcal Total: -30.69 -8.39 -39.08 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060805607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.986 kcal (2) G-P(sol) polarization free energy of solvation -30.690 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.387 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds