Wall clock time and date at job start Tue Mar 31 2020 10:52:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50700 * 1 3 3 C 1.38288 * 119.92367 * 2 1 4 4 C 1.38108 * 120.07366 * 179.74476 * 3 2 1 5 5 C 1.38893 * 119.92360 * 0.25656 * 4 3 2 6 6 N 1.39814 * 120.07143 * 179.97438 * 5 4 3 7 7 C 1.46503 * 119.99998 * 235.96795 * 6 5 4 8 8 C 1.50695 * 109.46994 * 90.00198 * 7 6 5 9 9 H 1.08003 * 120.00558 * 359.97438 * 8 7 6 10 10 C 1.37881 * 120.00289 * 179.97438 * 8 7 6 11 11 N 1.31514 * 119.99516 * 359.97438 * 10 8 7 12 12 Si 1.86793 * 120.00381 * 180.02562 * 10 8 7 13 13 H 1.48502 * 109.47403 * 359.97438 * 12 10 8 14 14 H 1.48503 * 109.47257 * 120.00087 * 12 10 8 15 15 H 1.48502 * 109.47337 * 240.00023 * 12 10 8 16 16 C 1.34775 * 120.00182 * 55.96909 * 6 5 4 17 17 O 1.21793 * 119.99837 * 5.57914 * 16 6 5 18 18 C 1.41500 * 120.00404 * 185.57493 * 16 6 5 19 19 C 1.35650 * 120.00096 * 179.97438 * 18 16 6 20 20 C 1.41600 * 119.99696 * 180.02562 * 19 18 16 21 21 C 1.37953 * 126.10109 * 180.02562 * 20 19 18 22 22 C 1.40315 * 106.53044 * 180.02562 * 21 20 19 23 23 C 1.35151 * 107.20216 * 359.97438 * 22 21 20 24 24 O 1.34022 * 109.03668 * 359.73578 * 23 22 21 25 25 C 1.38899 * 119.85902 * 0.02562 * 5 4 3 26 26 C 1.38107 * 119.92098 * 359.97438 * 25 5 4 27 27 H 1.09001 * 109.47094 * 90.00436 * 1 2 3 28 28 H 1.09002 * 109.46723 * 209.99987 * 1 2 3 29 29 H 1.08997 * 109.47381 * 329.99933 * 1 2 3 30 30 H 1.08008 * 119.96210 * 0.02562 * 3 2 1 31 31 H 1.07999 * 120.03616 * 180.27390 * 4 3 2 32 32 H 1.09000 * 109.46850 * 210.00065 * 7 6 5 33 33 H 1.08994 * 109.47101 * 330.00076 * 7 6 5 34 34 H 0.96998 * 120.00127 * 179.97438 * 11 10 8 35 35 H 1.08001 * 119.99796 * 0.02562 * 18 16 6 36 36 H 1.08001 * 120.00108 * 0.02562 * 19 18 16 37 37 H 1.08000 * 126.73598 * 359.97438 * 21 20 19 38 38 H 1.07997 * 126.39900 * 179.97438 * 22 21 20 39 39 H 1.08000 * 125.48363 * 179.97438 * 23 22 21 40 40 H 1.07994 * 120.04260 * 179.97438 * 25 5 4 41 41 H 1.08005 * 119.96068 * 180.02562 * 26 25 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1968 1.1985 0.0000 4 6 3.5779 1.2022 0.0053 5 6 4.2739 0.0002 0.0053 6 7 5.6721 0.0003 0.0101 7 6 6.4083 -0.7076 -1.0402 8 6 6.6634 0.2287 -2.1931 9 1 6.3120 1.2490 -2.1482 10 6 7.3455 -0.2170 -3.3053 11 7 7.7739 -1.4592 -3.3599 12 14 7.6624 0.9439 -4.7340 13 1 7.0832 2.2764 -4.4271 14 1 9.1258 1.0772 -4.9484 15 1 7.0297 0.4008 -5.9629 16 6 6.3426 0.6515 0.9811 17 8 5.7347 1.1535 1.9094 18 6 7.7528 0.7520 0.9220 19 6 8.4276 1.4080 1.8990 20 6 9.8387 1.5089 1.8395 21 6 10.6478 2.1430 2.7596 22 6 11.9657 1.9949 2.3013 23 6 11.9112 1.2928 1.1477 24 8 10.6326 0.9970 0.8760 25 6 3.5780 -1.2019 -0.0006 26 6 2.1970 -1.1984 -0.0059 27 1 -0.3633 -0.0001 -1.0277 28 1 -0.3633 -0.8900 0.5138 29 1 -0.3634 0.8899 0.5138 30 1 1.6549 2.1328 0.0004 31 1 4.1160 2.1385 0.0098 32 1 7.3593 -1.0613 -0.6420 33 1 5.8204 -1.5579 -1.3859 34 1 8.2535 -1.7729 -4.1425 35 1 8.2918 0.3072 0.0986 36 1 7.8885 1.8532 2.7221 37 1 10.3292 2.6538 3.6562 38 1 12.8570 2.3715 2.7808 39 1 12.7616 1.0118 0.5442 40 1 4.1162 -2.1382 -0.0011 41 1 1.6552 -2.1327 -0.0101 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000060805607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:52:56 Heat of formation + Delta-G solvation = 9.312964 kcal Electronic energy + Delta-G solvation = -24647.333884 eV Core-core repulsion = 21072.752440 eV Total energy + Delta-G solvation = -3574.581444 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.49547 -41.62534 -39.69432 -36.98320 -35.30856 -34.70292 -33.98322 -32.79347 -31.89249 -30.02482 -29.39919 -27.36860 -25.47065 -24.76554 -23.47893 -22.84888 -22.42798 -21.18768 -19.78754 -18.94928 -18.70036 -17.94233 -17.70706 -17.06723 -16.59661 -16.45589 -16.27773 -15.75939 -15.59315 -15.20510 -14.61491 -14.49117 -14.39538 -14.35357 -13.89400 -13.78361 -13.61615 -13.43040 -13.17050 -13.00946 -12.94196 -12.82122 -12.59225 -12.47748 -12.14233 -12.00947 -11.77104 -11.68444 -11.06713 -10.83185 -10.65703 -10.25276 -9.85681 -9.09861 -8.84420 -8.25851 -6.42122 -0.60785 0.38847 0.48842 1.17622 1.34860 1.36647 1.48481 1.72158 2.08559 2.17032 2.37460 2.42603 2.85155 3.02969 3.67236 3.94713 4.00615 4.06079 4.06632 4.09676 4.17729 4.29640 4.48330 4.51086 4.55352 4.69047 4.84021 4.87539 4.88953 4.93682 4.99406 5.04091 5.11540 5.14499 5.20131 5.25615 5.41534 5.53073 5.58801 5.64064 5.68722 5.80685 5.95281 6.13640 6.17828 6.39274 6.68748 7.17154 7.30313 8.79164 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.010342 B = 0.004629 C = 0.003456 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2706.806283 B = 6047.758049 C = 8101.069436 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.103 4.103 2 C -0.103 4.103 3 C -0.110 4.110 4 C -0.129 4.129 5 C 0.132 3.868 6 N -0.556 5.556 7 C 0.255 3.745 8 C -0.545 4.545 9 H 0.047 0.953 10 C 0.024 3.976 11 N -0.917 5.917 12 Si 0.958 3.042 13 H -0.274 1.274 14 H -0.272 1.272 15 H -0.273 1.273 16 C 0.550 3.450 17 O -0.583 6.583 18 C -0.220 4.220 19 C 0.021 3.979 20 C -0.047 4.047 21 C -0.150 4.150 22 C -0.223 4.223 23 C -0.021 4.021 24 O -0.191 6.191 25 C -0.144 4.144 26 C -0.106 4.106 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.077 0.923 30 H 0.147 0.853 31 H 0.101 0.899 32 H 0.031 0.969 33 H 0.025 0.975 34 H 0.270 0.730 35 H 0.124 0.876 36 H 0.169 0.831 37 H 0.181 0.819 38 H 0.187 0.813 39 H 0.237 0.763 40 H 0.118 0.882 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.558 4.296 9.018 10.005 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C -0.103 4.103 3 C -0.128 4.128 4 C -0.149 4.149 5 C 0.041 3.959 6 N -0.280 5.280 7 C 0.135 3.865 8 C -0.583 4.583 9 H 0.065 0.935 10 C -0.177 4.177 11 N -0.556 5.556 12 Si 0.783 3.217 13 H -0.199 1.199 14 H -0.197 1.197 15 H -0.199 1.199 16 C 0.346 3.654 17 O -0.468 6.468 18 C -0.241 4.241 19 C 0.002 3.998 20 C -0.095 4.095 21 C -0.169 4.169 22 C -0.241 4.241 23 C -0.090 4.090 24 O -0.087 6.087 25 C -0.163 4.163 26 C -0.124 4.124 27 H 0.098 0.902 28 H 0.099 0.901 29 H 0.096 0.904 30 H 0.165 0.835 31 H 0.119 0.881 32 H 0.049 0.951 33 H 0.043 0.957 34 H 0.079 0.921 35 H 0.142 0.858 36 H 0.186 0.814 37 H 0.199 0.801 38 H 0.204 0.796 39 H 0.254 0.746 40 H 0.136 0.864 41 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -0.858 4.222 9.098 10.066 hybrid contribution 0.795 0.289 -1.086 1.376 sum -0.063 4.511 8.012 9.195 Atomic orbital electron populations 1.20784 0.88062 1.03930 1.03211 1.20303 0.98114 0.92183 0.99711 1.21142 0.92186 0.99357 1.00132 1.21129 0.95621 0.96266 1.01918 1.17993 0.82855 0.94640 1.00449 1.45805 1.04471 1.51176 1.26543 1.19220 0.91197 0.91775 0.84259 1.21561 1.36978 0.97567 1.02230 0.93465 1.25644 0.94735 0.96709 1.00599 1.70011 1.38237 1.16566 1.30823 0.85506 0.78304 0.78912 0.79011 1.19861 1.19709 1.19865 1.17247 0.89009 0.77917 0.81251 1.90712 1.71483 1.49851 1.34741 1.22100 0.93674 1.06048 1.02259 1.20777 0.88727 0.93139 0.97198 1.20038 0.91436 1.05895 0.92174 1.22765 0.92778 1.00879 1.00462 1.22185 0.98896 1.05189 0.97834 1.25241 0.84257 1.00015 0.99461 1.84205 1.18656 1.61236 1.44618 1.21258 0.95734 0.96416 1.02930 1.21167 0.92222 0.99293 0.99753 0.90231 0.90136 0.90427 0.83498 0.88114 0.95117 0.95716 0.92084 0.85814 0.81422 0.80118 0.79575 0.74640 0.86364 0.82898 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.93 10.01 71.24 0.71 -1.22 16 2 C -0.10 -2.93 5.88 -19.84 -0.12 -3.05 16 3 C -0.11 -3.56 9.69 22.25 0.22 -3.34 16 4 C -0.13 -5.34 8.91 22.40 0.20 -5.14 16 5 C 0.13 5.92 5.19 38.18 0.20 6.12 16 6 N -0.56 -26.95 2.56 -645.37 -1.65 -28.60 16 7 C 0.26 13.45 4.67 85.63 0.40 13.85 16 8 C -0.54 -30.62 9.25 25.60 0.24 -30.38 16 9 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 10 C 0.02 1.31 5.46 84.66 0.46 1.77 16 11 N -0.92 -52.36 13.29 21.45 0.28 -52.07 16 12 Si 0.96 43.74 29.54 68.60 2.03 45.76 16 13 H -0.27 -12.51 7.11 99.48 0.71 -11.80 16 14 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 15 H -0.27 -12.05 7.11 99.48 0.71 -11.35 16 16 C 0.55 25.94 7.21 85.05 0.61 26.55 16 17 O -0.58 -28.24 15.44 -4.65 -0.07 -28.31 16 18 C -0.22 -9.49 8.61 22.47 0.19 -9.30 16 19 C 0.02 0.75 9.39 22.50 0.21 0.96 16 20 C -0.05 -1.48 6.84 23.03 0.16 -1.32 16 21 C -0.15 -3.51 10.90 22.71 0.25 -3.26 16 22 C -0.22 -4.38 10.87 22.06 0.24 -4.14 16 23 C -0.02 -0.48 12.06 67.11 0.81 0.33 16 24 O -0.19 -6.36 10.18 -6.12 -0.06 -6.43 16 25 C -0.14 -5.62 9.30 22.40 0.21 -5.41 16 26 C -0.11 -3.28 9.69 22.25 0.22 -3.06 16 27 H 0.08 1.33 8.14 -2.39 -0.02 1.31 16 28 H 0.08 1.25 8.09 -2.39 -0.02 1.23 16 29 H 0.08 1.24 8.08 -2.39 -0.02 1.22 16 30 H 0.15 3.77 8.06 -2.91 -0.02 3.75 16 31 H 0.10 4.37 8.03 -2.91 -0.02 4.35 16 32 H 0.03 1.68 6.34 -2.39 -0.02 1.67 16 33 H 0.02 1.36 7.29 -2.39 -0.02 1.35 16 34 H 0.27 14.42 8.31 -92.71 -0.77 13.65 16 35 H 0.12 5.90 5.82 -2.91 -0.02 5.88 16 36 H 0.17 5.29 7.46 -2.91 -0.02 5.27 16 37 H 0.18 3.10 8.06 -2.91 -0.02 3.07 16 38 H 0.19 2.24 8.06 -2.91 -0.02 2.22 16 39 H 0.24 3.33 8.06 -2.91 -0.02 3.31 16 40 H 0.12 4.56 7.78 -2.91 -0.02 4.54 16 41 H 0.15 3.60 8.06 -2.91 -0.02 3.58 16 Total: -1.00 -71.69 359.69 6.76 -64.93 By element: Atomic # 1 Polarization: 23.71 SS G_CDS: 1.04 Total: 24.75 kcal Atomic # 6 Polarization: -25.23 SS G_CDS: 5.20 Total: -20.03 kcal Atomic # 7 Polarization: -79.31 SS G_CDS: -1.37 Total: -80.68 kcal Atomic # 8 Polarization: -34.60 SS G_CDS: -0.13 Total: -34.73 kcal Atomic # 14 Polarization: 43.74 SS G_CDS: 2.03 Total: 45.76 kcal Total: -71.69 6.76 -64.93 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000060805607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.242 kcal (2) G-P(sol) polarization free energy of solvation -71.691 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.929 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.313 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds