Wall clock time and date at job start Tue Mar 31 2020 09:45:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86805 * 119.99614 * 2 1 4 4 H 1.48502 * 109.47233 * 269.99815 * 3 2 1 5 5 H 1.48500 * 109.47028 * 30.00349 * 3 2 1 6 6 H 1.48508 * 109.46882 * 150.00059 * 3 2 1 7 7 C 1.38695 * 120.00366 * 179.97438 * 2 1 3 8 8 H 1.08009 * 119.99950 * 179.97438 * 7 2 1 9 9 O 1.34812 * 120.00269 * 0.02562 * 7 2 1 10 10 C 1.35513 * 117.00302 * 185.06410 * 9 7 2 11 11 C 1.38832 * 120.16293 * 354.39426 * 10 9 7 12 12 C 1.38027 * 120.07573 * 180.02562 * 11 10 9 13 13 C 1.38578 * 120.39985 * 359.97438 * 12 11 10 14 14 C 1.37825 * 120.32268 * 359.97438 * 13 12 11 15 15 C 1.39673 * 119.92200 * 0.02562 * 14 13 12 16 16 C 1.47528 * 120.19792 * 179.97438 * 15 14 13 17 17 O 1.21596 * 119.99970 * 180.02562 * 16 15 14 18 18 N 1.34779 * 119.99961 * 0.02562 * 16 15 14 19 19 C 1.46508 * 119.99527 * 179.97438 * 18 16 15 20 20 C 1.53005 * 109.46504 * 179.97438 * 19 18 16 21 21 C 1.50699 * 109.46673 * 180.02562 * 20 19 18 22 22 C 1.38239 * 119.99880 * 269.72712 * 21 20 19 23 23 C 1.38234 * 119.99878 * 179.76828 * 22 21 20 24 24 C 1.38245 * 120.00009 * 0.50730 * 23 22 21 25 25 C 1.38238 * 119.99712 * 359.74642 * 24 23 22 26 26 C 1.38227 * 119.99930 * 359.97438 * 25 24 23 27 27 H 0.96994 * 120.00177 * 359.97438 * 1 2 3 28 28 H 1.07997 * 119.96395 * 0.02562 * 11 10 9 29 29 H 1.08000 * 119.80396 * 180.02562 * 12 11 10 30 30 H 1.07992 * 119.84019 * 180.02562 * 13 12 11 31 31 H 1.08002 * 120.04315 * 179.75153 * 14 13 12 32 32 H 0.96989 * 120.00225 * 359.97438 * 18 16 15 33 33 H 1.08988 * 109.47294 * 299.99630 * 19 18 16 34 34 H 1.09002 * 109.46689 * 60.00363 * 19 18 16 35 35 H 1.09001 * 109.47569 * 299.99814 * 20 19 18 36 36 H 1.08997 * 109.46997 * 60.00186 * 20 19 18 37 37 H 1.08001 * 119.99927 * 359.97438 * 22 21 20 38 38 H 1.08004 * 120.00366 * 180.22939 * 23 22 21 39 39 H 1.07994 * 119.99843 * 179.72367 * 24 23 22 40 40 H 1.08000 * 119.99368 * 179.97438 * 25 24 23 41 41 H 1.08004 * 120.00019 * 179.97438 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4403 0.7001 7 6 2.0087 -1.2011 0.0005 8 1 3.0888 -1.2010 0.0001 9 8 1.3348 -2.3687 0.0005 10 6 2.0688 -3.5027 0.1077 11 6 3.4556 -3.4400 0.0941 12 6 4.2015 -4.5963 0.2028 13 6 3.5747 -5.8260 0.3265 14 6 2.1989 -5.9073 0.3429 15 6 1.4310 -4.7457 0.2338 16 6 -0.0420 -4.8257 0.2501 17 8 -0.7070 -3.8123 0.1544 18 7 -0.6506 -6.0222 0.3709 19 6 -2.1134 -6.1015 0.3876 20 6 -2.5432 -7.5628 0.5327 21 6 -4.0479 -7.6444 0.5493 22 6 -4.7309 -7.5712 1.7489 23 6 -6.1114 -7.6413 1.7636 24 6 -6.8084 -7.7952 0.5797 25 6 -6.1250 -7.8736 -0.6194 26 6 -4.7449 -7.7977 -0.6346 27 1 -0.4850 0.8400 0.0004 28 1 3.9514 -2.4854 -0.0016 29 1 5.2801 -4.5423 0.1922 30 1 4.1671 -6.7250 0.4114 31 1 1.7151 -6.8685 0.4355 32 1 -0.1202 -6.8307 0.4469 33 1 -2.4991 -5.5239 1.2276 34 1 -2.5098 -5.6973 -0.5439 35 1 -2.1576 -8.1401 -0.3076 36 1 -2.1468 -7.9673 1.4639 37 1 -4.1861 -7.4560 2.6743 38 1 -6.6453 -7.5804 2.7005 39 1 -7.8866 -7.8544 0.5917 40 1 -6.6696 -7.9942 -1.5443 41 1 -4.2110 -7.8594 -1.5714 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000194044310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:45:17 Heat of formation + Delta-G solvation = -13.728425 kcal Electronic energy + Delta-G solvation = -24022.312200 eV Core-core repulsion = 20446.731606 eV Total energy + Delta-G solvation = -3575.580594 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -39.67707 -39.33221 -38.02681 -36.32406 -35.03621 -32.56675 -32.31284 -31.01811 -30.54686 -28.91722 -28.15444 -25.38714 -24.03032 -22.70834 -22.54851 -21.36633 -21.02076 -19.82876 -18.03164 -17.56696 -16.84784 -16.08877 -15.65467 -15.63992 -15.07030 -14.64639 -14.58993 -14.22666 -14.16027 -13.77145 -13.71892 -13.50180 -13.09061 -13.06753 -12.84905 -12.56052 -12.44269 -11.77412 -11.69900 -11.50552 -11.28410 -11.19833 -11.11139 -10.98603 -10.88235 -10.77157 -10.45151 -9.55765 -9.05135 -8.91898 -8.86858 -8.75814 -8.53027 -8.25472 -7.29727 -6.42983 -4.03096 1.20589 1.27425 1.73190 2.32965 3.12512 3.13708 3.18424 3.56969 3.77766 3.78963 3.94605 4.65300 4.69174 4.73151 4.87834 4.99863 5.06898 5.09010 5.10320 5.19286 5.37461 5.47308 5.48590 5.51373 5.55671 5.74119 5.87053 5.89493 6.02022 6.02234 6.13049 6.22243 6.32965 6.37880 6.50996 6.57431 6.70348 6.86676 6.92368 6.97832 7.07191 7.25055 7.30409 7.70602 7.93461 8.15070 8.96482 9.12957 9.69146 10.70809 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.014171 B = 0.003063 C = 0.002592 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1975.392153 B = 9137.890883 C =10800.727955 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.832 5.832 2 C 0.045 3.955 3 Si 0.941 3.059 4 H -0.272 1.272 5 H -0.276 1.276 6 H -0.266 1.266 7 C -0.404 4.404 8 H 0.094 0.906 9 O -0.124 6.124 10 C 0.189 3.811 11 C -0.238 4.238 12 C -0.051 4.051 13 C -0.231 4.231 14 C -0.038 4.038 15 C -0.227 4.227 16 C 0.553 3.447 17 O -0.501 6.501 18 N -0.746 5.746 19 C 0.131 3.869 20 C -0.092 4.092 21 C -0.077 4.077 22 C -0.114 4.114 23 C -0.120 4.120 24 C -0.126 4.126 25 C -0.120 4.120 26 C -0.114 4.114 27 H 0.271 0.729 28 H 0.132 0.868 29 H 0.110 0.890 30 H 0.109 0.891 31 H 0.112 0.888 32 H 0.392 0.608 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.078 0.922 36 H 0.078 0.922 37 H 0.123 0.877 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.121 0.879 41 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.293 -16.549 1.415 17.432 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.464 5.464 2 C -0.163 4.163 3 Si 0.765 3.235 4 H -0.197 1.197 5 H -0.201 1.201 6 H -0.191 1.191 7 C -0.480 4.480 8 H 0.111 0.889 9 O -0.022 6.022 10 C 0.129 3.871 11 C -0.257 4.257 12 C -0.070 4.070 13 C -0.251 4.251 14 C -0.057 4.057 15 C -0.232 4.232 16 C 0.342 3.658 17 O -0.374 6.374 18 N -0.402 5.402 19 C 0.007 3.993 20 C -0.129 4.129 21 C -0.077 4.077 22 C -0.132 4.132 23 C -0.138 4.138 24 C -0.144 4.144 25 C -0.138 4.138 26 C -0.132 4.132 27 H 0.081 0.919 28 H 0.149 0.851 29 H 0.128 0.872 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.226 0.774 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.097 0.903 36 H 0.097 0.903 37 H 0.141 0.859 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.139 0.861 41 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -6.281 -15.501 1.319 16.777 hybrid contribution 0.787 0.355 0.030 0.864 sum -5.494 -15.146 1.349 16.168 Atomic orbital electron populations 1.70128 1.05972 1.27717 1.42536 1.25386 0.95796 0.98953 0.96192 0.85731 0.78992 0.80004 0.78791 1.19749 1.20127 1.19067 1.21498 0.91887 0.81137 1.53473 0.88875 1.84173 1.33535 1.10979 1.73486 1.19283 0.89858 0.87428 0.90526 1.21158 0.93387 0.99335 1.11847 1.20896 0.98624 0.92323 0.95134 1.20458 0.94067 0.97110 1.13416 1.20758 0.93837 0.95502 0.95637 1.18859 0.91946 0.92162 1.20200 1.18240 0.87818 0.82827 0.76873 1.90955 1.65818 1.33871 1.46806 1.45896 1.06364 1.09231 1.78685 1.21134 0.80920 0.94732 1.02526 1.20809 0.91621 0.97082 1.03426 1.19733 0.95118 0.99488 0.93404 1.21105 0.94392 0.99999 0.97693 1.21149 0.94296 1.00105 0.98213 1.21151 0.99802 1.00669 0.92773 1.21144 0.94370 1.00222 0.98032 1.21099 0.94310 1.00034 0.97749 0.91862 0.85087 0.87201 0.87292 0.87052 0.77414 0.91700 0.91721 0.90346 0.90335 0.85928 0.86116 0.86270 0.86120 0.85936 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.83 -25.33 13.67 55.48 0.76 -24.57 16 2 C 0.04 1.25 5.49 -17.52 -0.10 1.16 16 3 Si 0.94 20.66 29.55 -169.99 -5.02 15.64 16 4 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.54 16 6 H -0.27 -5.57 7.11 56.52 0.40 -5.17 16 7 C -0.40 -11.53 9.49 30.90 0.29 -11.24 16 8 H 0.09 2.41 5.21 -52.48 -0.27 2.13 16 9 O -0.12 -3.69 7.84 -21.03 -0.16 -3.85 16 10 C 0.19 4.73 6.66 -38.60 -0.26 4.48 16 11 C -0.24 -5.15 9.16 -39.44 -0.36 -5.51 16 12 C -0.05 -0.91 10.03 -39.53 -0.40 -1.30 16 13 C -0.23 -3.79 10.03 -39.61 -0.40 -4.18 16 14 C -0.04 -0.66 9.54 -39.20 -0.37 -1.03 16 15 C -0.23 -4.96 5.89 -104.81 -0.62 -5.58 16 16 C 0.55 12.32 7.76 -12.47 -0.10 12.23 16 17 O -0.50 -13.98 15.17 -16.57 -0.25 -14.24 16 18 N -0.75 -12.05 5.51 -61.34 -0.34 -12.38 16 19 C 0.13 1.92 5.66 -4.03 -0.02 1.89 16 20 C -0.09 -0.95 5.46 -27.88 -0.15 -1.10 16 21 C -0.08 -0.84 5.13 -104.62 -0.54 -1.38 16 22 C -0.11 -1.20 9.70 -39.58 -0.38 -1.58 16 23 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 24 C -0.13 -1.19 10.05 -39.58 -0.40 -1.58 16 25 C -0.12 -1.16 10.05 -39.59 -0.40 -1.56 16 26 C -0.11 -1.20 9.70 -39.59 -0.38 -1.58 16 27 H 0.27 7.53 8.31 -40.82 -0.34 7.19 16 28 H 0.13 2.79 5.64 -52.49 -0.30 2.50 16 29 H 0.11 1.59 8.06 -52.49 -0.42 1.16 16 30 H 0.11 1.43 8.06 -52.49 -0.42 1.01 16 31 H 0.11 1.44 6.40 -52.49 -0.34 1.11 16 32 H 0.39 4.92 6.50 -40.82 -0.27 4.65 16 33 H 0.06 1.06 8.14 -51.94 -0.42 0.63 16 34 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 35 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 36 H 0.08 0.71 8.08 -51.93 -0.42 0.29 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.71 16 38 H 0.12 0.93 8.06 -52.48 -0.42 0.51 16 39 H 0.12 0.86 8.06 -52.49 -0.42 0.44 16 40 H 0.12 0.92 8.06 -52.49 -0.42 0.50 16 41 H 0.12 1.13 8.06 -52.48 -0.42 0.71 16 LS Contribution 353.81 15.07 5.33 5.33 Total: -1.00 -35.56 353.81 -9.61 -45.18 By element: Atomic # 1 Polarization: 13.28 SS G_CDS: -4.95 Total: 8.33 kcal Atomic # 6 Polarization: -14.46 SS G_CDS: -4.98 Total: -19.44 kcal Atomic # 7 Polarization: -37.38 SS G_CDS: 0.42 Total: -36.95 kcal Atomic # 8 Polarization: -17.67 SS G_CDS: -0.42 Total: -18.09 kcal Atomic # 14 Polarization: 20.66 SS G_CDS: -5.02 Total: 15.64 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -35.56 -9.61 -45.18 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000194044310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.449 kcal (2) G-P(sol) polarization free energy of solvation -35.564 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.115 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.613 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.728 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds