Wall clock time and date at job start Tue Mar 31 2020 10:54:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38164 * 119.98426 * 2 1 4 4 C 1.38167 * 120.12879 * 180.27382 * 3 2 1 5 5 C 1.38813 * 120.08290 * 359.74645 * 4 3 2 6 6 O 1.35898 * 120.02170 * 179.97438 * 5 4 3 7 7 C 1.38586 * 119.95697 * 359.97438 * 5 4 3 8 8 C 1.38791 * 119.87513 * 0.02562 * 7 5 4 9 9 N 1.39926 * 120.03724 * 179.97438 * 8 7 5 10 10 C 1.34775 * 120.00460 * 340.24467 * 9 8 7 11 11 O 1.21287 * 119.99871 * 354.61440 * 10 9 8 12 12 C 1.50704 * 120.00145 * 174.61546 * 10 9 8 13 13 C 1.50701 * 109.46796 * 179.97438 * 12 10 9 14 14 C 1.37634 * 120.13369 * 265.00138 * 13 12 10 15 15 C 1.38606 * 120.25136 * 180.30235 * 14 13 12 16 16 C 1.38654 * 120.50081 * 359.44149 * 15 14 13 17 17 C 1.37600 * 120.24821 * 0.56021 * 16 15 14 18 18 C 1.40706 * 120.12336 * 85.02630 * 13 12 10 19 19 C 1.41396 * 120.24460 * 359.95373 * 18 13 12 20 20 H 1.08002 * 119.99842 * 330.84692 * 19 18 13 21 21 C 1.39943 * 119.99935 * 150.84482 * 19 18 13 22 22 N 1.30824 * 119.99848 * 167.89477 * 21 19 18 23 23 Si 1.86797 * 119.99985 * 347.89705 * 21 19 18 24 24 H 1.48503 * 109.47203 * 95.05938 * 23 21 19 25 25 H 1.48496 * 109.47255 * 215.06057 * 23 21 19 26 26 H 1.48495 * 109.47397 * 335.06111 * 23 21 19 27 27 H 1.09002 * 109.47107 * 270.23832 * 1 2 3 28 28 H 1.09006 * 109.46769 * 30.23914 * 1 2 3 29 29 H 1.08998 * 109.47502 * 150.23780 * 1 2 3 30 30 H 1.08004 * 119.93470 * 0.02562 * 3 2 1 31 31 H 1.07996 * 119.96275 * 179.71483 * 4 3 2 32 32 H 0.96703 * 113.99759 * 270.01808 * 6 5 4 33 33 H 1.08002 * 120.05457 * 180.02562 * 7 5 4 34 34 H 0.97008 * 119.99993 * 160.24463 * 9 8 7 35 35 H 1.09000 * 109.46859 * 60.00499 * 12 10 9 36 36 H 1.08989 * 109.47212 * 300.00232 * 12 10 9 37 37 H 1.08007 * 119.87284 * 0.02562 * 14 13 12 38 38 H 1.08005 * 119.75220 * 179.70117 * 15 14 13 39 39 H 1.08003 * 119.87873 * 180.30387 * 16 15 14 40 40 H 1.08001 * 120.12942 * 179.74914 * 17 16 15 41 41 H 0.96999 * 119.99747 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1967 0.0000 4 6 3.5791 1.2002 -0.0057 5 6 4.2779 0.0008 -0.0062 6 8 5.6369 0.0057 -0.0123 7 6 3.5889 -1.2016 -0.0003 8 6 2.2010 -1.2030 0.0054 9 7 1.5019 -2.4151 0.0108 10 6 2.1150 -3.5485 -0.3840 11 8 3.2397 -3.5039 -0.8357 12 6 1.4031 -4.8714 -0.2640 13 6 2.2995 -5.9719 -0.7704 14 6 2.1926 -6.4062 -2.0721 15 6 3.0116 -7.4224 -2.5386 16 6 3.9543 -8.0051 -1.7054 17 6 4.0788 -7.5869 -0.4004 18 6 3.2487 -6.5598 0.0859 19 6 3.3678 -6.1216 1.4249 20 1 3.1238 -5.1017 1.6830 21 6 3.8019 -7.0095 2.4157 22 7 4.1393 -6.5580 3.5963 23 14 3.8997 -8.8392 2.0524 24 1 5.2816 -9.1879 1.6352 25 1 3.5428 -9.6059 3.2730 26 1 2.9525 -9.1783 0.9603 27 1 -0.3633 0.0043 1.0277 28 1 -0.3633 0.8879 -0.5176 29 1 -0.3634 -0.8921 -0.5101 30 1 1.6561 2.1313 0.0004 31 1 4.1161 2.1372 -0.0104 32 1 6.0262 0.0054 -0.8975 33 1 4.1310 -2.1357 -0.0002 34 1 0.5758 -2.4396 0.2986 35 1 0.4885 -4.8468 -0.8564 36 1 1.1544 -5.0567 0.7808 37 1 1.4648 -5.9563 -2.7312 38 1 2.9175 -7.7603 -3.5602 39 1 4.5906 -8.7929 -2.0809 40 1 4.8110 -8.0449 0.2481 41 1 4.4405 -7.1734 4.2830 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001471128200.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:54:45 Heat of formation + Delta-G solvation = -32.685845 kcal Electronic energy + Delta-G solvation = -25116.728598 eV Core-core repulsion = 21540.325948 eV Total energy + Delta-G solvation = -3576.402649 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.53466 -38.93239 -37.75299 -36.82416 -34.18480 -33.60010 -32.08374 -31.71030 -30.39338 -29.71283 -27.09182 -26.12616 -24.88817 -23.05122 -21.58227 -21.33394 -20.52455 -19.49005 -18.54842 -17.36222 -16.84766 -16.34571 -15.74581 -15.55444 -15.39013 -14.88439 -14.43685 -14.36049 -13.94995 -13.75439 -13.62588 -13.44629 -13.21545 -12.84679 -12.68376 -12.18485 -11.95500 -11.88513 -11.72365 -11.60039 -11.43913 -11.22749 -10.82940 -10.73368 -10.63125 -10.25476 -10.21184 -9.66555 -9.59852 -9.17027 -9.12713 -8.43204 -7.81684 -7.60488 -7.54964 -6.92414 -4.50846 1.28936 1.48883 2.51966 2.70003 3.05297 3.11753 3.20363 3.31504 3.38784 3.81068 3.97642 4.37398 4.51914 4.82746 4.95913 5.13586 5.23628 5.36280 5.49208 5.49814 5.57122 5.70786 5.79587 5.86449 5.91851 6.04470 6.08405 6.13164 6.22608 6.33478 6.50780 6.51563 6.55936 6.65762 6.70015 6.92597 7.10361 7.18447 7.39136 7.62194 7.67563 7.73397 7.82283 7.86993 8.11264 8.33043 8.56505 8.64547 8.80004 10.09460 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.015309 B = 0.004117 C = 0.003861 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1828.582144 B = 6799.175196 C = 7251.062466 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.141 4.141 3 C -0.086 4.086 4 C -0.173 4.173 5 C 0.121 3.879 6 O -0.498 6.498 7 C -0.164 4.164 8 C 0.180 3.820 9 N -0.678 5.678 10 C 0.514 3.486 11 O -0.495 6.495 12 C -0.072 4.072 13 C -0.172 4.172 14 C -0.066 4.066 15 C -0.242 4.242 16 C -0.078 4.078 17 C -0.232 4.232 18 C 0.109 3.891 19 C -0.440 4.440 20 H 0.088 0.912 21 C 0.082 3.918 22 N -0.811 5.811 23 Si 0.913 3.087 24 H -0.273 1.273 25 H -0.295 1.295 26 H -0.240 1.240 27 H 0.069 0.931 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.125 0.875 31 H 0.124 0.876 32 H 0.389 0.611 33 H 0.166 0.834 34 H 0.409 0.591 35 H 0.083 0.917 36 H 0.106 0.894 37 H 0.091 0.909 38 H 0.092 0.908 39 H 0.092 0.908 40 H 0.097 0.903 41 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.356 10.617 -5.744 14.136 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.144 4.144 3 C -0.104 4.104 4 C -0.193 4.193 5 C 0.076 3.924 6 O -0.308 6.308 7 C -0.184 4.184 8 C 0.084 3.916 9 N -0.323 5.323 10 C 0.303 3.697 11 O -0.367 6.367 12 C -0.112 4.112 13 C -0.174 4.174 14 C -0.085 4.085 15 C -0.262 4.262 16 C -0.097 4.097 17 C -0.251 4.251 18 C 0.106 3.894 19 C -0.469 4.469 20 H 0.106 0.894 21 C -0.137 4.137 22 N -0.435 5.435 23 Si 0.741 3.259 24 H -0.199 1.199 25 H -0.223 1.223 26 H -0.163 1.163 27 H 0.088 0.912 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.143 0.857 31 H 0.142 0.858 32 H 0.245 0.755 33 H 0.183 0.817 34 H 0.245 0.755 35 H 0.101 0.899 36 H 0.124 0.876 37 H 0.109 0.891 38 H 0.110 0.890 39 H 0.110 0.890 40 H 0.115 0.885 41 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -6.541 10.541 -5.167 13.439 hybrid contribution -0.039 -0.696 -0.282 0.752 sum -6.580 9.845 -5.449 13.035 Atomic orbital electron populations 1.20677 0.91067 1.02737 1.02232 1.19570 0.96018 0.91728 1.07068 1.20577 0.93358 0.96779 0.99718 1.21283 0.94437 0.97602 1.05960 1.18328 0.82895 0.91782 0.99369 1.84806 1.16151 1.96463 1.33343 1.22057 0.93192 1.00463 1.02725 1.17512 0.91041 0.85114 0.97945 1.43869 1.15990 1.06193 1.66218 1.21461 0.87134 0.85202 0.75890 1.90601 1.18504 1.86085 1.41512 1.20319 0.97520 0.89290 1.04068 1.18975 1.01269 1.02133 0.94988 1.20423 0.97799 0.96139 0.94114 1.20320 1.03286 1.03763 0.98781 1.20584 0.97017 0.97975 0.94076 1.20916 1.03735 1.04707 0.95731 1.17485 0.88700 0.90015 0.93195 1.19449 1.37493 0.99351 0.90582 0.89377 1.26185 0.90867 1.02118 0.94523 1.69665 1.31182 1.38235 1.04426 0.86307 0.80267 0.81419 0.77887 1.19939 1.22271 1.16294 0.91210 0.91280 0.91862 0.85665 0.85839 0.75522 0.81705 0.75539 0.89914 0.87648 0.89054 0.88953 0.88962 0.88545 0.90486 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.00 9.45 36.00 0.34 -0.66 16 2 C -0.14 -1.79 5.90 -104.41 -0.62 -2.40 16 3 C -0.09 -1.01 9.69 -39.63 -0.38 -1.40 16 4 C -0.17 -2.26 9.98 -39.40 -0.39 -2.66 16 5 C 0.12 1.91 6.70 -39.24 -0.26 1.65 16 6 O -0.50 -7.42 13.50 -19.42 -0.26 -7.68 16 7 C -0.16 -2.96 8.72 -39.25 -0.34 -3.30 16 8 C 0.18 2.86 6.48 -83.72 -0.54 2.31 16 9 N -0.68 -10.26 5.07 -9.88 -0.05 -10.31 16 10 C 0.51 9.69 7.29 -10.98 -0.08 9.61 16 11 O -0.49 -11.30 12.93 5.55 0.07 -11.22 16 12 C -0.07 -1.31 5.19 -29.03 -0.15 -1.46 16 13 C -0.17 -3.83 4.43 -103.91 -0.46 -4.29 16 14 C -0.07 -1.39 9.66 -39.67 -0.38 -1.77 16 15 C -0.24 -5.11 10.05 -39.29 -0.39 -5.50 16 16 C -0.08 -1.74 10.02 -39.66 -0.40 -2.14 16 17 C -0.23 -5.71 6.88 -38.87 -0.27 -5.98 16 18 C 0.11 2.75 5.19 -106.82 -0.55 2.19 16 19 C -0.44 -11.71 8.63 -37.74 -0.33 -12.03 16 20 H 0.09 2.47 6.96 -52.49 -0.37 2.10 16 21 C 0.08 2.13 5.48 -17.34 -0.09 2.04 16 22 N -0.81 -21.73 13.93 55.55 0.77 -20.96 16 23 Si 0.91 20.88 24.36 -169.99 -4.14 16.74 16 24 H -0.27 -6.16 6.78 56.52 0.38 -5.78 16 25 H -0.29 -6.50 7.11 56.52 0.40 -6.10 16 26 H -0.24 -5.53 6.43 56.52 0.36 -5.17 16 27 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 29 H 0.06 0.53 6.89 -51.93 -0.36 0.18 16 30 H 0.13 1.10 8.06 -52.48 -0.42 0.68 16 31 H 0.12 1.34 8.06 -52.49 -0.42 0.92 16 32 H 0.39 3.89 9.06 45.56 0.41 4.31 16 33 H 0.17 3.56 5.42 -52.49 -0.28 3.28 16 34 H 0.41 4.66 7.20 -40.82 -0.29 4.37 16 35 H 0.08 1.18 8.05 -51.93 -0.42 0.76 16 36 H 0.11 1.91 7.12 -51.94 -0.37 1.54 16 37 H 0.09 1.64 8.06 -52.48 -0.42 1.22 16 38 H 0.09 1.70 8.06 -52.48 -0.42 1.27 16 39 H 0.09 1.79 8.06 -52.48 -0.42 1.37 16 40 H 0.10 2.37 4.19 -52.49 -0.22 2.15 16 41 H 0.28 6.95 8.30 -40.82 -0.34 6.61 16 LS Contribution 339.56 15.07 5.12 5.12 Total: -1.00 -32.33 339.56 -7.84 -40.17 By element: Atomic # 1 Polarization: 17.98 SS G_CDS: -4.04 Total: 13.93 kcal Atomic # 6 Polarization: -20.47 SS G_CDS: -5.31 Total: -25.78 kcal Atomic # 7 Polarization: -32.00 SS G_CDS: 0.72 Total: -31.27 kcal Atomic # 8 Polarization: -18.71 SS G_CDS: -0.19 Total: -18.90 kcal Atomic # 14 Polarization: 20.88 SS G_CDS: -4.14 Total: 16.74 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -32.33 -7.84 -40.17 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001471128200.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 7.485 kcal (2) G-P(sol) polarization free energy of solvation -32.326 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.841 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.171 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.686 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds