Wall clock time and date at job start Tue Mar 31 2020 09:41:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 116.99929 * 2 1 4 4 C 1.38491 * 119.98311 * 0.27656 * 3 2 1 5 5 C 1.39517 * 119.78944 * 180.22949 * 4 3 2 6 6 C 1.47799 * 120.12034 * 179.74065 * 5 4 3 7 7 O 1.21565 * 120.00146 * 359.73072 * 6 5 4 8 8 N 1.34778 * 119.99979 * 179.72652 * 6 5 4 9 9 C 1.39017 * 119.99814 * 184.38328 * 8 6 5 10 10 C 1.38675 * 120.28723 * 325.34064 * 9 8 6 11 11 C 1.38211 * 120.02929 * 180.25876 * 10 9 8 12 12 C 1.38874 * 120.61788 * 359.74145 * 11 10 9 13 13 C 1.36456 * 120.58662 * 359.97438 * 12 11 10 14 14 C 1.40739 * 119.94615 * 0.02562 * 13 12 11 15 15 C 1.41049 * 120.30615 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00235 * 154.81821 * 15 14 13 17 17 C 1.39969 * 120.00003 * 334.82378 * 15 14 13 18 18 N 1.30845 * 119.99978 * 334.81322 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 154.80859 * 17 15 14 20 20 H 1.48502 * 109.46891 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47044 * 300.00062 * 19 17 15 22 22 H 1.48500 * 109.46741 * 60.00047 * 19 17 15 23 23 C 1.39631 * 119.75541 * 359.47233 * 5 4 3 24 24 C 1.37951 * 119.96922 * 0.26988 * 23 5 4 25 25 C 1.38291 * 120.20706 * 0.02562 * 24 23 5 26 26 C 1.50703 * 119.87837 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47855 * 300.00524 * 1 2 3 29 29 H 1.09007 * 109.46809 * 60.00348 * 1 2 3 30 30 H 1.07998 * 120.10614 * 359.97438 * 4 3 2 31 31 H 0.96990 * 120.00159 * 4.38560 * 8 6 5 32 32 H 1.08003 * 119.98772 * 359.97438 * 10 9 8 33 33 H 1.07998 * 119.68911 * 179.76299 * 11 10 9 34 34 H 1.08005 * 119.70923 * 180.02562 * 12 11 10 35 35 H 1.08005 * 120.03258 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00017 * 354.62509 * 18 17 15 37 37 H 1.08003 * 120.01674 * 180.29862 * 23 5 4 38 38 H 1.07995 * 119.89849 * 180.02562 * 24 23 5 39 39 H 1.09000 * 109.47121 * 90.00476 * 26 25 24 40 40 H 1.09004 * 109.47313 * 210.00032 * 26 25 24 41 41 H 1.08992 * 109.47040 * 329.99844 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3722 0.0058 5 6 1.9289 3.6132 0.0009 6 6 1.1307 4.8571 0.0013 7 8 -0.0836 4.8001 0.0008 8 7 1.7491 6.0546 0.0021 9 6 1.0014 7.2230 0.0944 10 6 -0.2485 7.3023 -0.5011 11 6 -0.9850 8.4683 -0.4105 12 6 -0.4882 9.5670 0.2785 13 6 0.7360 9.5146 0.8788 14 6 1.5066 8.3394 0.8018 15 6 2.7733 8.2771 1.4191 16 1 3.1812 7.3233 1.7198 17 6 3.5017 9.4513 1.6421 18 7 3.2952 10.5020 0.8901 19 14 4.7684 9.5185 3.0133 20 1 5.3968 10.8638 3.0412 21 1 4.1033 9.2563 4.3149 22 1 5.8117 8.4891 2.7742 23 6 3.3238 3.6757 0.0014 24 6 4.0657 2.5126 0.0010 25 6 3.4323 1.2833 -0.0003 26 6 4.2500 0.0174 -0.0013 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2128 2.3174 0.0099 31 1 2.7158 6.1013 -0.0617 32 1 -0.6446 6.4542 -1.0398 33 1 -1.9561 8.5254 -0.8796 34 1 -1.0764 10.4707 0.3404 35 1 1.1135 10.3743 1.4127 36 1 2.6953 10.4441 0.1299 37 1 3.8217 4.6341 0.0025 38 1 5.1445 2.5623 0.0018 39 1 4.4468 -0.2888 1.0262 40 1 3.6997 -0.7702 -0.5160 41 1 5.1948 0.1956 -0.5146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000339166313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:06 Heat of formation + Delta-G solvation = -36.180219 kcal Electronic energy + Delta-G solvation = -24751.304332 eV Core-core repulsion = 21174.750155 eV Total energy + Delta-G solvation = -3576.554177 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -40.55182 -39.45325 -37.69036 -36.99933 -34.04827 -33.88409 -32.90176 -30.26787 -29.38807 -28.87043 -27.74898 -26.89215 -25.08370 -22.89517 -22.25252 -21.40008 -20.91142 -19.69943 -18.33762 -17.88742 -16.78377 -16.25431 -15.92299 -15.71509 -15.40534 -14.82930 -14.60052 -14.28155 -14.15635 -13.90006 -13.66178 -13.60904 -13.26955 -12.74576 -12.39987 -12.29673 -12.23854 -12.11319 -12.01249 -11.51879 -11.45095 -11.16981 -11.16428 -11.03229 -10.72037 -10.46393 -10.35831 -9.73545 -9.41165 -9.11639 -8.91968 -8.89357 -8.25163 -7.65314 -7.42301 -6.99505 -4.51503 0.85333 1.33865 2.59191 2.77812 3.10019 3.12419 3.19523 3.23799 3.30799 3.76368 3.93957 4.00378 4.51209 4.68595 4.71893 4.93469 5.04481 5.06123 5.10364 5.24186 5.35698 5.42557 5.43668 5.51827 5.54965 5.71705 5.99430 6.15410 6.18962 6.30869 6.32278 6.34330 6.46435 6.60687 6.80854 6.91822 7.11015 7.22483 7.35153 7.49352 7.68383 7.73105 7.88531 7.98663 8.18547 8.30364 8.62639 8.73404 8.91027 9.96250 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003953 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.057611 B = 7082.131117 C = 8723.691448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.315 6.315 3 C 0.114 3.886 4 C -0.148 4.148 5 C -0.088 4.088 6 C 0.538 3.462 7 O -0.539 6.539 8 N -0.626 5.626 9 C 0.003 3.997 10 C -0.071 4.071 11 C -0.241 4.241 12 C -0.090 4.090 13 C -0.208 4.208 14 C 0.092 3.908 15 C -0.525 4.525 16 H 0.074 0.926 17 C 0.041 3.959 18 N -0.793 5.793 19 Si 1.063 2.937 20 H -0.273 1.273 21 H -0.275 1.275 22 H -0.275 1.275 23 C -0.119 4.119 24 C -0.090 4.090 25 C -0.100 4.100 26 C -0.105 4.105 27 H 0.099 0.901 28 H 0.057 0.943 29 H 0.057 0.943 30 H 0.141 0.859 31 H 0.402 0.598 32 H 0.111 0.889 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.109 0.891 36 H 0.301 0.699 37 H 0.132 0.868 38 H 0.135 0.865 39 H 0.069 0.931 40 H 0.070 0.930 41 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.967 -15.692 -1.510 16.041 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.229 6.229 3 C 0.069 3.931 4 C -0.168 4.168 5 C -0.091 4.091 6 C 0.326 3.674 7 O -0.418 6.418 8 N -0.267 5.267 9 C -0.091 4.091 10 C -0.091 4.091 11 C -0.261 4.261 12 C -0.109 4.109 13 C -0.228 4.228 14 C 0.088 3.912 15 C -0.553 4.553 16 H 0.093 0.907 17 C -0.181 4.181 18 N -0.416 5.416 19 Si 0.887 3.113 20 H -0.198 1.198 21 H -0.200 1.200 22 H -0.201 1.201 23 C -0.138 4.138 24 C -0.108 4.108 25 C -0.101 4.101 26 C -0.162 4.162 27 H 0.118 0.882 28 H 0.076 0.924 29 H 0.076 0.924 30 H 0.159 0.841 31 H 0.239 0.761 32 H 0.129 0.871 33 H 0.110 0.890 34 H 0.109 0.891 35 H 0.127 0.873 36 H 0.115 0.885 37 H 0.149 0.851 38 H 0.153 0.847 39 H 0.088 0.912 40 H 0.089 0.911 41 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges 3.280 -14.871 -0.772 15.248 hybrid contribution -1.011 -0.720 -0.748 1.449 sum 2.269 -15.590 -1.520 15.828 Atomic orbital electron populations 1.23089 0.78239 1.03796 1.01919 1.86031 1.21429 1.26435 1.88958 1.18670 0.91695 0.84141 0.98555 1.21303 1.00904 0.90709 1.03890 1.19845 0.93573 0.93334 1.02380 1.18244 0.87585 0.83432 0.78167 1.90703 1.13576 1.87060 1.50494 1.42726 1.10428 1.04088 1.69491 1.17584 0.95800 0.88243 1.07482 1.20710 0.93799 0.96859 0.97692 1.20261 1.00733 0.94676 1.10429 1.20408 0.95751 0.96751 0.98012 1.20756 0.95634 0.99481 1.06937 1.17480 0.93569 0.90856 0.89266 1.20345 1.01988 0.96754 1.36216 0.90743 1.26977 0.99803 0.91381 0.99954 1.70468 1.28156 1.31437 1.11506 0.83657 0.75192 0.77328 0.75162 1.19797 1.19996 1.20087 1.21321 0.92722 0.99148 1.00630 1.20813 1.00026 0.90633 0.99375 1.19408 0.90541 0.96348 1.03843 1.20637 0.98776 0.94402 1.02390 0.88236 0.92388 0.92431 0.84132 0.76090 0.87124 0.88959 0.89123 0.87293 0.88547 0.85069 0.84728 0.91222 0.91125 0.91519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.81 101.05 0.99 1.22 16 2 O -0.31 -3.76 9.52 -19.46 -0.19 -3.94 16 3 C 0.11 1.53 6.65 -39.27 -0.26 1.27 16 4 C -0.15 -2.24 8.58 -39.01 -0.33 -2.58 16 5 C -0.09 -1.45 5.87 -104.99 -0.62 -2.07 16 6 C 0.54 10.93 7.61 -12.35 -0.09 10.83 16 7 O -0.54 -12.42 13.75 5.31 0.07 -12.35 16 8 N -0.63 -13.17 4.84 -10.34 -0.05 -13.22 16 9 C 0.00 0.06 6.33 -83.20 -0.53 -0.47 16 10 C -0.07 -1.71 8.68 -39.43 -0.34 -2.05 16 11 C -0.24 -5.60 10.04 -39.36 -0.39 -5.99 16 12 C -0.09 -2.11 9.96 -39.99 -0.40 -2.51 16 13 C -0.21 -5.25 7.88 -39.28 -0.31 -5.56 16 14 C 0.09 2.37 5.32 -106.65 -0.57 1.80 16 15 C -0.53 -13.05 8.35 -37.87 -0.32 -13.36 16 16 H 0.07 1.77 7.39 -52.48 -0.39 1.38 16 17 C 0.04 1.00 4.95 -17.32 -0.09 0.91 16 18 N -0.79 -20.08 12.32 55.55 0.68 -19.40 16 19 Si 1.06 20.56 30.00 -169.99 -5.10 15.46 16 20 H -0.27 -5.29 7.11 56.52 0.40 -4.89 16 21 H -0.27 -5.24 7.11 56.52 0.40 -4.84 16 22 H -0.28 -4.97 7.11 56.52 0.40 -4.57 16 23 C -0.12 -1.66 9.54 -39.17 -0.37 -2.03 16 24 C -0.09 -1.06 9.67 -39.67 -0.38 -1.45 16 25 C -0.10 -1.21 5.90 -104.39 -0.62 -1.82 16 26 C -0.11 -0.97 9.78 36.01 0.35 -0.61 16 27 H 0.10 0.64 8.14 -51.93 -0.42 0.21 16 28 H 0.06 0.53 7.65 -51.93 -0.40 0.13 16 29 H 0.06 0.52 7.67 -51.93 -0.40 0.12 16 30 H 0.14 2.10 5.88 -52.49 -0.31 1.80 16 31 H 0.40 7.60 6.00 -40.82 -0.24 7.35 16 32 H 0.11 2.65 6.19 -52.48 -0.33 2.33 16 33 H 0.09 1.92 8.06 -52.49 -0.42 1.49 16 34 H 0.09 1.87 8.06 -52.48 -0.42 1.44 16 35 H 0.11 2.80 6.45 -52.48 -0.34 2.46 16 36 H 0.30 7.84 6.62 -40.82 -0.27 7.57 16 37 H 0.13 1.69 6.41 -52.48 -0.34 1.35 16 38 H 0.13 1.20 8.06 -52.49 -0.42 0.78 16 39 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.65 7.52 -51.93 -0.39 0.26 16 41 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 LS Contribution 343.01 15.07 5.17 5.17 Total: -1.00 -29.73 343.01 -8.41 -38.14 By element: Atomic # 1 Polarization: 19.34 SS G_CDS: -4.73 Total: 14.62 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: -4.28 Total: -24.48 kcal Atomic # 7 Polarization: -33.25 SS G_CDS: 0.63 Total: -32.62 kcal Atomic # 8 Polarization: -16.18 SS G_CDS: -0.11 Total: -16.29 kcal Atomic # 14 Polarization: 20.56 SS G_CDS: -5.10 Total: 15.46 kcal Total LS contribution 5.17 Total: 5.17 kcal Total: -29.73 -8.41 -38.14 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.961 kcal (2) G-P(sol) polarization free energy of solvation -29.728 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.767 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.142 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.180 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds