Wall clock time and date at job start Tue Mar 31 2020 09:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42895 * 1 3 3 C 1.35910 * 116.99929 * 2 1 4 4 C 1.38491 * 119.98311 * 0.27656 * 3 2 1 5 5 C 1.39517 * 119.78944 * 180.22949 * 4 3 2 6 6 C 1.47799 * 120.12034 * 179.74065 * 5 4 3 7 7 O 1.21565 * 120.00146 * 359.73072 * 6 5 4 8 8 N 1.34778 * 119.99979 * 179.72652 * 6 5 4 9 9 C 1.39017 * 119.99814 * 184.38328 * 8 6 5 10 10 C 1.38675 * 120.28723 * 325.34064 * 9 8 6 11 11 C 1.38211 * 120.02929 * 180.25876 * 10 9 8 12 12 C 1.38874 * 120.61788 * 359.74145 * 11 10 9 13 13 C 1.36456 * 120.58662 * 359.97438 * 12 11 10 14 14 C 1.40739 * 119.94615 * 0.02562 * 13 12 11 15 15 C 1.41049 * 120.30615 * 179.97438 * 14 13 12 16 16 H 1.08004 * 120.00235 * 154.81821 * 15 14 13 17 17 C 1.39969 * 120.00003 * 334.82378 * 15 14 13 18 18 N 1.30845 * 119.99978 * 334.81322 * 17 15 14 19 19 Si 1.86803 * 120.00052 * 154.80859 * 17 15 14 20 20 H 1.48502 * 109.46891 * 180.02562 * 19 17 15 21 21 H 1.48501 * 109.47044 * 300.00062 * 19 17 15 22 22 H 1.48500 * 109.46741 * 60.00047 * 19 17 15 23 23 C 1.39631 * 119.75541 * 359.47233 * 5 4 3 24 24 C 1.37951 * 119.96922 * 0.26988 * 23 5 4 25 25 C 1.38291 * 120.20706 * 0.02562 * 24 23 5 26 26 C 1.50703 * 119.87837 * 179.97438 * 25 24 23 27 27 H 1.08998 * 109.47551 * 180.02562 * 1 2 3 28 28 H 1.08997 * 109.47855 * 300.00524 * 1 2 3 29 29 H 1.09007 * 109.46809 * 60.00348 * 1 2 3 30 30 H 1.07998 * 120.10614 * 359.97438 * 4 3 2 31 31 H 0.96990 * 120.00159 * 4.38560 * 8 6 5 32 32 H 1.08003 * 119.98772 * 359.97438 * 10 9 8 33 33 H 1.07998 * 119.68911 * 179.76299 * 11 10 9 34 34 H 1.08005 * 119.70923 * 180.02562 * 12 11 10 35 35 H 1.08005 * 120.03258 * 180.02562 * 13 12 11 36 36 H 0.97006 * 120.00017 * 354.62509 * 18 17 15 37 37 H 1.08003 * 120.01674 * 180.29862 * 23 5 4 38 38 H 1.07995 * 119.89849 * 180.02562 * 24 23 5 39 39 H 1.09000 * 109.47121 * 90.00476 * 26 25 24 40 40 H 1.09004 * 109.47313 * 210.00032 * 26 25 24 41 41 H 1.08992 * 109.47040 * 329.99844 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4289 0.0000 0.0000 3 6 2.0460 1.2110 0.0000 4 6 1.2913 2.3722 0.0058 5 6 1.9289 3.6132 0.0009 6 6 1.1307 4.8571 0.0013 7 8 -0.0836 4.8001 0.0008 8 7 1.7491 6.0546 0.0021 9 6 1.0014 7.2230 0.0944 10 6 -0.2485 7.3023 -0.5011 11 6 -0.9850 8.4683 -0.4105 12 6 -0.4882 9.5670 0.2785 13 6 0.7360 9.5146 0.8788 14 6 1.5066 8.3394 0.8018 15 6 2.7733 8.2771 1.4191 16 1 3.1812 7.3233 1.7198 17 6 3.5017 9.4513 1.6421 18 7 3.2952 10.5020 0.8901 19 14 4.7684 9.5185 3.0133 20 1 5.3968 10.8638 3.0412 21 1 4.1033 9.2563 4.3149 22 1 5.8117 8.4891 2.7742 23 6 3.3238 3.6757 0.0014 24 6 4.0657 2.5126 0.0010 25 6 3.4323 1.2833 -0.0003 26 6 4.2500 0.0174 -0.0013 27 1 -0.3634 -1.0276 0.0005 28 1 -0.3635 0.5139 0.8899 29 1 -0.3633 0.5138 -0.8901 30 1 0.2128 2.3174 0.0099 31 1 2.7158 6.1013 -0.0617 32 1 -0.6446 6.4542 -1.0398 33 1 -1.9561 8.5254 -0.8796 34 1 -1.0764 10.4707 0.3404 35 1 1.1135 10.3743 1.4127 36 1 2.6953 10.4441 0.1299 37 1 3.8217 4.6341 0.0025 38 1 5.1445 2.5623 0.0018 39 1 4.4468 -0.2888 1.0262 40 1 3.6997 -0.7702 -0.5160 41 1 5.1948 0.1956 -0.5146 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000339166313.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:41:05 Heat of formation + Delta-G solvation = -51.790365 kcal Electronic energy + Delta-G solvation = -24751.981239 eV Core-core repulsion = 21174.750155 eV Total energy + Delta-G solvation = -3577.231083 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -41.80085 -40.85998 -39.28001 -38.21210 -35.85201 -35.65375 -33.95568 -31.38693 -31.21617 -30.52963 -28.56649 -28.06455 -26.90673 -24.27021 -23.29225 -23.08344 -22.48175 -21.21239 -19.98092 -19.43908 -18.23228 -17.46372 -17.07222 -16.83482 -16.66636 -16.45721 -16.30631 -15.73485 -15.64919 -15.07420 -14.90542 -14.72135 -14.41508 -14.40766 -14.17684 -13.88452 -13.37629 -13.18924 -13.04260 -12.97003 -12.70710 -12.49236 -12.35398 -12.25929 -12.10643 -12.08786 -11.95320 -11.52588 -11.15522 -10.88431 -10.70081 -9.95693 -9.58140 -9.34363 -9.25804 -8.84490 -6.44175 -0.32438 0.30550 0.79767 0.89604 1.53711 1.65522 1.80521 1.81959 2.18158 2.31364 2.33580 2.66947 2.75275 3.49913 3.57050 3.73725 3.89193 4.05253 4.13422 4.30589 4.33715 4.37218 4.38306 4.50002 4.64586 4.68333 4.70886 4.72275 4.87688 4.91454 5.03580 5.11861 5.21992 5.25392 5.28024 5.39664 5.45686 5.63263 5.68137 5.75985 5.87625 5.99394 6.10198 6.26553 6.31265 6.55807 6.79963 6.87880 7.22319 8.03694 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.014437 B = 0.003953 C = 0.003209 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1939.057611 B = 7082.131117 C = 8723.691448 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 O -0.317 6.317 3 C 0.109 3.891 4 C -0.159 4.159 5 C -0.115 4.115 6 C 0.538 3.462 7 O -0.574 6.574 8 N -0.626 5.626 9 C -0.005 4.005 10 C -0.087 4.087 11 C -0.241 4.241 12 C -0.093 4.093 13 C -0.227 4.227 14 C 0.067 3.933 15 C -0.543 4.543 16 H 0.080 0.920 17 C 0.010 3.990 18 N -0.811 5.811 19 Si 1.113 2.887 20 H -0.274 1.274 21 H -0.271 1.271 22 H -0.250 1.250 23 C -0.119 4.119 24 C -0.083 4.083 25 C -0.093 4.093 26 C -0.104 4.104 27 H 0.131 0.869 28 H 0.053 0.947 29 H 0.055 0.945 30 H 0.132 0.868 31 H 0.411 0.589 32 H 0.108 0.892 33 H 0.118 0.882 34 H 0.118 0.882 35 H 0.098 0.902 36 H 0.286 0.714 37 H 0.138 0.862 38 H 0.172 0.828 39 H 0.081 0.919 40 H 0.069 0.931 41 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.881 -17.669 -1.076 18.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.076 4.076 2 O -0.231 6.231 3 C 0.063 3.937 4 C -0.179 4.179 5 C -0.118 4.118 6 C 0.328 3.672 7 O -0.456 6.456 8 N -0.268 5.268 9 C -0.099 4.099 10 C -0.107 4.107 11 C -0.261 4.261 12 C -0.112 4.112 13 C -0.247 4.247 14 C 0.062 3.938 15 C -0.571 4.571 16 H 0.098 0.902 17 C -0.208 4.208 18 N -0.434 5.434 19 Si 0.930 3.070 20 H -0.198 1.198 21 H -0.196 1.196 22 H -0.174 1.174 23 C -0.138 4.138 24 C -0.100 4.100 25 C -0.094 4.094 26 C -0.160 4.160 27 H 0.149 0.851 28 H 0.072 0.928 29 H 0.073 0.927 30 H 0.149 0.851 31 H 0.249 0.751 32 H 0.126 0.874 33 H 0.136 0.864 34 H 0.136 0.864 35 H 0.116 0.884 36 H 0.099 0.901 37 H 0.156 0.844 38 H 0.190 0.810 39 H 0.100 0.900 40 H 0.088 0.912 41 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges 5.195 -16.875 -0.359 17.660 hybrid contribution -1.685 -0.250 -0.941 1.947 sum 3.510 -17.125 -1.300 17.530 Atomic orbital electron populations 1.23315 0.76938 1.05747 1.01614 1.86034 1.22759 1.25546 1.88712 1.18833 0.92456 0.83965 0.98427 1.21289 1.00781 0.91113 1.04700 1.19594 0.94455 0.91694 1.06085 1.18868 0.87535 0.84220 0.76577 1.90661 1.15280 1.87643 1.52039 1.42708 1.10709 1.03603 1.69818 1.17791 0.96170 0.89141 1.06808 1.20879 0.94243 0.97329 0.98286 1.20596 1.01595 0.94107 1.09806 1.20678 0.95366 0.97877 0.97279 1.20805 0.96627 0.99296 1.07962 1.17802 0.94430 0.91504 0.90016 1.20538 1.02111 0.97510 1.36895 0.90220 1.28336 1.00881 0.90556 1.01012 1.70575 1.28835 1.32135 1.11851 0.83046 0.73586 0.77953 0.72387 1.19849 1.19600 1.17354 1.21475 0.91626 1.00587 1.00154 1.21202 1.01682 0.89466 0.97687 1.19903 0.90254 0.97874 1.01374 1.20728 0.99220 0.92650 1.03449 0.85138 0.92834 0.92677 0.85061 0.75088 0.87393 0.86397 0.86386 0.88424 0.90141 0.84395 0.81029 0.90033 0.91157 0.89179 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.32 9.81 113.37 1.11 1.43 16 2 O -0.32 -7.05 9.52 -92.54 -0.88 -7.93 16 3 C 0.11 2.75 6.65 22.47 0.15 2.90 16 4 C -0.16 -4.84 8.58 22.64 0.19 -4.64 16 5 C -0.12 -3.83 5.87 -20.10 -0.12 -3.94 16 6 C 0.54 22.53 7.61 86.77 0.66 23.19 16 7 O -0.57 -27.57 13.75 -3.92 -0.05 -27.62 16 8 N -0.63 -27.05 4.84 -304.90 -1.48 -28.52 16 9 C 0.00 -0.24 6.33 38.91 0.25 0.01 16 10 C -0.09 -4.32 8.68 22.37 0.19 -4.12 16 11 C -0.24 -11.22 10.04 22.42 0.22 -11.00 16 12 C -0.09 -4.38 9.96 22.01 0.22 -4.16 16 13 C -0.23 -11.73 7.88 22.46 0.18 -11.55 16 14 C 0.07 3.50 5.32 -21.18 -0.11 3.39 16 15 C -0.54 -27.34 8.35 23.38 0.20 -27.14 16 16 H 0.08 3.81 7.39 -2.91 -0.02 3.79 16 17 C 0.01 0.47 4.95 85.26 0.42 0.89 16 18 N -0.81 -41.80 12.32 21.83 0.27 -41.53 16 19 Si 1.11 40.59 30.00 68.60 2.06 42.65 16 20 H -0.27 -9.95 7.11 99.48 0.71 -9.24 16 21 H -0.27 -9.67 7.11 99.48 0.71 -8.96 16 22 H -0.25 -8.04 7.11 99.48 0.71 -7.33 16 23 C -0.12 -3.17 9.54 22.54 0.21 -2.95 16 24 C -0.08 -1.69 9.67 22.21 0.21 -1.47 16 25 C -0.09 -1.97 5.90 -19.71 -0.12 -2.09 16 26 C -0.10 -1.50 9.78 71.24 0.70 -0.80 16 27 H 0.13 1.40 8.14 -2.39 -0.02 1.38 16 28 H 0.05 0.97 7.65 -2.39 -0.02 0.95 16 29 H 0.05 0.98 7.67 -2.38 -0.02 0.96 16 30 H 0.13 4.11 5.88 -2.91 -0.02 4.09 16 31 H 0.41 15.81 6.00 -92.72 -0.56 15.26 16 32 H 0.11 5.35 6.19 -2.91 -0.02 5.33 16 33 H 0.12 4.77 8.06 -2.91 -0.02 4.75 16 34 H 0.12 4.77 8.06 -2.91 -0.02 4.74 16 35 H 0.10 5.18 6.45 -2.91 -0.02 5.16 16 36 H 0.29 15.42 6.62 -92.70 -0.61 14.81 16 37 H 0.14 3.38 6.41 -2.91 -0.02 3.36 16 38 H 0.17 2.22 8.06 -2.91 -0.02 2.20 16 39 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 40 H 0.07 1.05 7.52 -2.39 -0.02 1.04 16 41 H 0.09 0.91 8.08 -2.39 -0.02 0.89 16 Total: -1.00 -66.00 343.01 5.16 -60.83 By element: Atomic # 1 Polarization: 43.52 SS G_CDS: 0.67 Total: 44.19 kcal Atomic # 6 Polarization: -46.65 SS G_CDS: 4.57 Total: -42.07 kcal Atomic # 7 Polarization: -68.84 SS G_CDS: -1.21 Total: -70.05 kcal Atomic # 8 Polarization: -34.62 SS G_CDS: -0.94 Total: -35.55 kcal Atomic # 14 Polarization: 40.59 SS G_CDS: 2.06 Total: 42.65 kcal Total: -66.00 5.16 -60.83 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000339166313.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.044 kcal (2) G-P(sol) polarization free energy of solvation -65.999 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.954 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.835 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.790 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds