Wall clock time and date at job start Tue Mar 31 2020 11:14:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46775 * 2 1 4 4 C 1.36938 * 119.99917 * 275.23300 * 3 2 1 5 5 H 1.07999 * 119.99605 * 37.71379 * 4 3 2 6 6 C 1.38811 * 120.00201 * 217.70607 * 4 3 2 7 7 N 1.31621 * 119.99518 * 21.65284 * 6 4 3 8 8 Si 1.86797 * 120.00292 * 201.64683 * 6 4 3 9 9 H 1.48504 * 109.47016 * 60.00480 * 8 6 4 10 10 H 1.48497 * 109.47089 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47364 * 300.00814 * 8 6 4 12 12 C 1.46503 * 119.99991 * 95.24302 * 3 2 1 13 13 C 1.53003 * 109.46793 * 269.99519 * 12 3 2 14 14 H 1.09003 * 109.46781 * 54.99961 * 13 12 3 15 15 C 1.53002 * 109.47147 * 295.00131 * 13 12 3 16 16 C 1.50697 * 109.46953 * 174.99717 * 13 12 3 17 17 C 1.38232 * 120.00038 * 239.99889 * 16 13 12 18 18 C 1.38236 * 119.99998 * 179.97438 * 17 16 13 19 19 C 1.38240 * 120.00037 * 0.02562 * 18 17 16 20 20 S 1.76198 * 120.00337 * 179.97438 * 19 18 17 21 21 C 1.81400 * 104.44688 * 89.99803 * 20 19 18 22 22 O 1.42098 * 104.27611 * 333.93104 * 20 19 18 23 23 O 1.42100 * 104.28018 * 206.07183 * 20 19 18 24 24 C 1.38240 * 119.99732 * 0.25334 * 19 18 17 25 25 C 1.38234 * 119.99910 * 359.49063 * 24 19 18 26 26 H 1.09003 * 109.47196 * 300.00050 * 1 2 3 27 27 H 1.09000 * 109.47110 * 60.00070 * 1 2 3 28 28 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46967 * 240.00402 * 2 1 3 30 30 H 1.09000 * 109.47110 * 119.99930 * 2 1 3 31 31 H 0.97005 * 119.99837 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47287 * 149.99464 * 12 3 2 33 33 H 1.08994 * 109.46997 * 29.99115 * 12 3 2 34 34 H 1.09003 * 109.47180 * 59.99852 * 15 13 12 35 35 H 1.09000 * 109.46853 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.46699 * 300.00238 * 15 13 12 37 37 H 1.07994 * 120.00460 * 359.97438 * 17 16 13 38 38 H 1.07997 * 120.00647 * 180.02562 * 18 17 16 39 39 H 1.08995 * 109.47598 * 300.00082 * 21 20 19 40 40 H 1.09011 * 109.46891 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47204 * 60.00431 * 21 20 19 42 42 H 1.08002 * 120.00062 * 179.72634 * 24 19 18 43 43 H 1.08000 * 119.99843 * 180.25051 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1445 2.0629 -1.1810 5 1 1.4117 1.9286 -1.9629 6 6 3.2142 2.9264 -1.3731 7 7 4.3070 2.7909 -0.6522 8 14 3.1027 4.2807 -2.6548 9 1 1.9691 5.1817 -2.3256 10 1 4.3675 5.0589 -2.6639 11 1 2.8831 3.6780 -3.9941 12 6 2.3717 2.0333 1.2634 13 6 1.1404 2.7391 1.8350 14 1 0.3227 2.0244 1.9285 15 6 0.7216 3.8733 0.8974 16 6 1.4705 3.3050 3.1920 17 6 0.7621 2.8911 4.3045 18 6 1.0654 3.4099 5.5495 19 6 2.0767 4.3430 5.6818 20 16 2.4628 5.0048 7.2685 21 6 3.7220 3.8810 7.9334 22 8 1.2515 4.8862 8.0018 23 8 3.0283 6.2781 6.9890 24 6 2.7812 4.7612 4.5684 25 6 2.4815 4.2385 3.3243 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.0547 3.3941 -0.7867 32 1 3.1604 2.7646 1.0867 33 1 2.7231 1.2842 1.9730 34 1 0.4828 3.4639 -0.0842 35 1 -0.1559 4.3758 1.3043 36 1 1.5394 4.5879 0.8038 37 1 -0.0282 2.1624 4.2012 38 1 0.5122 3.0862 6.4187 39 1 3.3107 2.8739 8.0016 40 1 4.0233 4.2188 8.9250 41 1 4.5891 3.8753 7.2729 42 1 3.5684 5.4935 4.6711 43 1 3.0347 4.5622 2.4550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000449019708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:10 Heat of formation + Delta-G solvation = -32.355816 kcal Electronic energy + Delta-G solvation = -24176.393637 eV Core-core repulsion = 20735.449250 eV Total energy + Delta-G solvation = -3440.944387 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.134 amu Computer time = 1.78 seconds Orbital eigenvalues (eV) -39.38323 -37.15879 -36.60078 -35.99579 -33.63047 -31.93095 -30.88762 -29.91096 -29.47722 -28.43120 -26.03068 -23.79958 -23.10930 -22.60066 -20.57467 -19.52791 -19.00493 -17.78117 -16.78783 -16.28526 -15.99696 -15.37506 -14.89429 -14.79994 -14.41187 -13.93177 -13.80010 -13.50594 -13.39927 -13.37882 -13.19775 -12.86185 -12.51152 -12.33154 -12.15001 -12.03689 -11.83634 -11.72318 -11.36291 -11.21743 -11.18874 -11.03204 -10.82872 -10.76672 -10.55472 -10.34946 -10.28537 -10.03760 -9.70596 -9.58454 -8.87374 -8.80552 -8.49545 -6.61431 -5.85408 -3.42715 -0.00820 1.02558 1.50791 2.82474 3.31345 3.38190 3.40676 3.56413 3.95382 4.03391 4.41734 4.56554 4.71645 4.93212 5.02386 5.07005 5.28657 5.42021 5.49824 5.58497 5.59886 5.77086 5.89542 5.99177 6.07091 6.13621 6.18977 6.28219 6.29512 6.34926 6.48551 6.58802 6.63765 6.78271 6.83340 6.86742 6.94642 7.08122 7.12503 7.25209 7.60141 7.76261 8.45736 9.13003 9.75128 10.34262 11.14151 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.003741 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.031062 B = 7483.249145 C = 8272.060767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.581 5.581 4 C -0.257 4.257 5 H 0.059 0.941 6 C 0.018 3.982 7 N -0.886 5.886 8 Si 0.888 3.112 9 H -0.280 1.280 10 H -0.290 1.290 11 H -0.281 1.281 12 C 0.157 3.843 13 C -0.086 4.086 14 H 0.067 0.933 15 C -0.126 4.126 16 C 0.003 3.997 17 C -0.147 4.147 18 C -0.026 4.026 19 C -0.677 4.677 20 S 2.504 3.496 21 C -0.651 4.651 22 O -0.945 6.945 23 O -0.943 6.943 24 C -0.024 4.024 25 C -0.132 4.132 26 H 0.043 0.957 27 H 0.049 0.951 28 H 0.035 0.965 29 H 0.044 0.956 30 H 0.032 0.968 31 H 0.255 0.745 32 H 0.099 0.901 33 H 0.022 0.978 34 H 0.083 0.917 35 H 0.027 0.973 36 H 0.048 0.952 37 H 0.127 0.873 38 H 0.134 0.866 39 H 0.131 0.869 40 H 0.127 0.873 41 H 0.132 0.868 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.519 -0.129 14.288 14.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.013 3.987 3 N -0.300 5.300 4 C -0.387 4.387 5 H 0.077 0.923 6 C -0.182 4.182 7 N -0.528 5.528 8 Si 0.717 3.283 9 H -0.206 1.206 10 H -0.216 1.216 11 H -0.207 1.207 12 C 0.030 3.970 13 C -0.107 4.107 14 H 0.085 0.915 15 C -0.183 4.183 16 C 0.002 3.998 17 C -0.166 4.166 18 C -0.045 4.045 19 C -0.766 4.766 20 S 2.685 3.315 21 C -0.801 4.801 22 O -0.942 6.942 23 O -0.940 6.940 24 C -0.043 4.043 25 C -0.151 4.151 26 H 0.062 0.938 27 H 0.068 0.932 28 H 0.054 0.946 29 H 0.062 0.938 30 H 0.051 0.949 31 H 0.065 0.935 32 H 0.116 0.884 33 H 0.041 0.959 34 H 0.101 0.899 35 H 0.047 0.953 36 H 0.067 0.933 37 H 0.145 0.855 38 H 0.152 0.848 39 H 0.149 0.851 40 H 0.146 0.854 41 H 0.151 0.849 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.674 0.659 14.635 14.892 hybrid contribution 0.226 -0.004 -1.135 1.157 sum -2.448 0.656 13.500 13.736 Atomic orbital electron populations 1.22376 1.00084 0.98951 1.01177 1.20859 0.91695 0.87362 0.98737 1.43739 1.75823 1.08086 1.02393 1.18880 1.04560 1.21261 0.93986 0.92342 1.25114 0.94156 1.01154 0.97791 1.69997 1.03015 1.37316 1.42463 0.86613 0.77127 0.82693 0.81910 1.20598 1.21560 1.20685 1.20990 0.93835 0.96486 0.85657 1.21227 1.02114 0.97932 0.89377 0.91499 1.21690 0.99091 0.96915 1.00609 1.20668 0.91500 0.91358 0.96265 1.21214 1.01277 1.01854 0.92255 1.20804 0.93200 0.92167 0.98352 1.30178 1.10516 1.15504 1.20366 1.04882 0.75960 0.75785 0.74882 1.30234 1.18981 1.17797 1.13066 1.93560 1.42067 1.86942 1.71675 1.93571 1.79988 1.36251 1.84214 1.20895 0.96222 0.95423 0.91742 1.21304 0.98372 0.97680 0.97698 0.93793 0.93178 0.94605 0.93782 0.94926 0.93458 0.88366 0.95928 0.89860 0.95348 0.93269 0.85538 0.84783 0.85060 0.85400 0.84922 0.84591 0.84598 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 31. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.86 10.21 37.16 0.38 -2.48 16 2 C 0.14 2.80 6.44 -4.04 -0.03 2.78 16 3 N -0.58 -13.33 2.31 -173.24 -0.40 -13.73 16 4 C -0.26 -6.49 7.39 -15.06 -0.11 -6.60 16 5 H 0.06 1.50 7.92 -52.49 -0.42 1.08 16 6 C 0.02 0.48 4.95 -17.43 -0.09 0.39 16 7 N -0.89 -23.91 11.50 55.49 0.64 -23.27 16 8 Si 0.89 20.48 29.61 -169.99 -5.03 15.45 16 9 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 11 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 12 C 0.16 3.38 4.58 -4.04 -0.02 3.36 16 13 C -0.09 -1.56 2.77 -91.77 -0.25 -1.82 16 14 H 0.07 1.19 6.21 -51.93 -0.32 0.86 16 15 C -0.13 -2.41 8.56 37.16 0.32 -2.09 16 16 C 0.00 0.05 4.78 -104.63 -0.50 -0.45 16 17 C -0.15 -2.10 9.67 -39.58 -0.38 -2.48 16 18 C -0.03 -0.34 9.47 -39.58 -0.37 -0.71 16 19 C -0.68 -8.65 5.66 -39.58 -0.22 -8.87 16 20 S 2.50 26.24 5.80 -107.50 -0.62 25.61 16 21 C -0.65 -4.08 10.80 101.05 1.09 -2.99 16 22 O -0.95 -12.48 17.13 -57.54 -0.99 -13.47 16 23 O -0.94 -12.89 17.12 -57.54 -0.98 -13.87 16 24 C -0.02 -0.34 9.47 -39.58 -0.37 -0.71 16 25 C -0.13 -2.13 8.76 -39.58 -0.35 -2.48 16 26 H 0.04 0.74 6.47 -51.93 -0.34 0.40 16 27 H 0.05 0.91 8.14 -51.93 -0.42 0.48 16 28 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 29 H 0.04 0.92 8.08 -51.93 -0.42 0.50 16 30 H 0.03 0.62 7.83 -51.93 -0.41 0.21 16 31 H 0.26 6.72 8.31 -40.82 -0.34 6.38 16 32 H 0.10 2.37 4.97 -51.93 -0.26 2.11 16 33 H 0.02 0.48 7.86 -51.93 -0.41 0.07 16 34 H 0.08 1.76 6.35 -51.93 -0.33 1.43 16 35 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 36 H 0.05 0.98 7.39 -51.93 -0.38 0.59 16 37 H 0.13 1.58 7.95 -52.49 -0.42 1.16 16 38 H 0.13 1.41 7.57 -52.49 -0.40 1.02 16 39 H 0.13 0.65 8.14 -51.93 -0.42 0.23 16 40 H 0.13 0.57 8.14 -51.92 -0.42 0.15 16 41 H 0.13 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.14 1.66 7.57 -52.49 -0.40 1.26 16 43 H 0.14 2.31 7.16 -52.49 -0.38 1.93 16 LS Contribution 358.76 15.07 5.41 5.41 Total: -1.00 -31.74 358.76 -9.43 -41.17 By element: Atomic # 1 Polarization: 8.40 SS G_CDS: -6.54 Total: 1.87 kcal Atomic # 6 Polarization: -24.25 SS G_CDS: -0.91 Total: -25.16 kcal Atomic # 7 Polarization: -37.24 SS G_CDS: 0.24 Total: -37.00 kcal Atomic # 8 Polarization: -25.37 SS G_CDS: -1.97 Total: -27.34 kcal Atomic # 14 Polarization: 20.48 SS G_CDS: -5.03 Total: 15.45 kcal Atomic # 16 Polarization: 26.24 SS G_CDS: -0.62 Total: 25.61 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -31.74 -9.43 -41.17 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449019708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.814 kcal (2) G-P(sol) polarization free energy of solvation -31.737 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.432 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.169 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.356 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.78 seconds