Wall clock time and date at job start Tue Mar 31 2020 11:14:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46775 * 2 1 4 4 C 1.36938 * 119.99917 * 275.23300 * 3 2 1 5 5 H 1.07999 * 119.99605 * 37.71379 * 4 3 2 6 6 C 1.38811 * 120.00201 * 217.70607 * 4 3 2 7 7 N 1.31621 * 119.99518 * 21.65284 * 6 4 3 8 8 Si 1.86797 * 120.00292 * 201.64683 * 6 4 3 9 9 H 1.48504 * 109.47016 * 60.00480 * 8 6 4 10 10 H 1.48497 * 109.47089 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47364 * 300.00814 * 8 6 4 12 12 C 1.46503 * 119.99991 * 95.24302 * 3 2 1 13 13 C 1.53003 * 109.46793 * 269.99519 * 12 3 2 14 14 H 1.09003 * 109.46781 * 54.99961 * 13 12 3 15 15 C 1.53002 * 109.47147 * 295.00131 * 13 12 3 16 16 C 1.50697 * 109.46953 * 174.99717 * 13 12 3 17 17 C 1.38232 * 120.00038 * 239.99889 * 16 13 12 18 18 C 1.38236 * 119.99998 * 179.97438 * 17 16 13 19 19 C 1.38240 * 120.00037 * 0.02562 * 18 17 16 20 20 S 1.76198 * 120.00337 * 179.97438 * 19 18 17 21 21 C 1.81400 * 104.44688 * 89.99803 * 20 19 18 22 22 O 1.42098 * 104.27611 * 333.93104 * 20 19 18 23 23 O 1.42100 * 104.28018 * 206.07183 * 20 19 18 24 24 C 1.38240 * 119.99732 * 0.25334 * 19 18 17 25 25 C 1.38234 * 119.99910 * 359.49063 * 24 19 18 26 26 H 1.09003 * 109.47196 * 300.00050 * 1 2 3 27 27 H 1.09000 * 109.47110 * 60.00070 * 1 2 3 28 28 H 1.08997 * 109.47089 * 180.02562 * 1 2 3 29 29 H 1.08992 * 109.46967 * 240.00402 * 2 1 3 30 30 H 1.09000 * 109.47110 * 119.99930 * 2 1 3 31 31 H 0.97005 * 119.99837 * 179.97438 * 7 6 4 32 32 H 1.08999 * 109.47287 * 149.99464 * 12 3 2 33 33 H 1.08994 * 109.46997 * 29.99115 * 12 3 2 34 34 H 1.09003 * 109.47180 * 59.99852 * 15 13 12 35 35 H 1.09000 * 109.46853 * 179.97438 * 15 13 12 36 36 H 1.09001 * 109.46699 * 300.00238 * 15 13 12 37 37 H 1.07994 * 120.00460 * 359.97438 * 17 16 13 38 38 H 1.07997 * 120.00647 * 180.02562 * 18 17 16 39 39 H 1.08995 * 109.47598 * 300.00082 * 21 20 19 40 40 H 1.09011 * 109.46891 * 179.97438 * 21 20 19 41 41 H 1.08997 * 109.47204 * 60.00431 * 21 20 19 42 42 H 1.08002 * 120.00062 * 179.72634 * 24 19 18 43 43 H 1.08000 * 119.99843 * 180.25051 * 25 24 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1445 2.0629 -1.1810 5 1 1.4117 1.9286 -1.9629 6 6 3.2142 2.9264 -1.3731 7 7 4.3070 2.7909 -0.6522 8 14 3.1027 4.2807 -2.6548 9 1 1.9691 5.1817 -2.3256 10 1 4.3675 5.0589 -2.6639 11 1 2.8831 3.6780 -3.9941 12 6 2.3717 2.0333 1.2634 13 6 1.1404 2.7391 1.8350 14 1 0.3227 2.0244 1.9285 15 6 0.7216 3.8733 0.8974 16 6 1.4705 3.3050 3.1920 17 6 0.7621 2.8911 4.3045 18 6 1.0654 3.4099 5.5495 19 6 2.0767 4.3430 5.6818 20 16 2.4628 5.0048 7.2685 21 6 3.7220 3.8810 7.9334 22 8 1.2515 4.8862 8.0018 23 8 3.0283 6.2781 6.9890 24 6 2.7812 4.7612 4.5684 25 6 2.4815 4.2385 3.3243 26 1 -0.3634 0.5138 0.8900 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 -1.0276 0.0005 29 1 1.8933 -0.5137 -0.8900 30 1 1.8934 -0.5138 0.8900 31 1 5.0547 3.3941 -0.7867 32 1 3.1604 2.7646 1.0867 33 1 2.7231 1.2842 1.9730 34 1 0.4828 3.4639 -0.0842 35 1 -0.1559 4.3758 1.3043 36 1 1.5394 4.5879 0.8038 37 1 -0.0282 2.1624 4.2012 38 1 0.5122 3.0862 6.4187 39 1 3.3107 2.8739 8.0016 40 1 4.0233 4.2188 8.9250 41 1 4.5891 3.8753 7.2729 42 1 3.5684 5.4935 4.6711 43 1 3.0347 4.5622 2.4550 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000449019708.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:14:09 Heat of formation + Delta-G solvation = -51.723468 kcal Electronic energy + Delta-G solvation = -24177.233481 eV Core-core repulsion = 20735.449250 eV Total energy + Delta-G solvation = -3441.784231 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.134 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -40.58083 -38.21215 -38.09215 -36.93721 -35.08008 -33.78106 -31.99769 -31.10242 -30.28485 -29.90417 -27.81584 -25.42197 -24.44389 -23.73516 -22.19169 -20.97633 -19.95334 -18.76169 -18.57290 -17.11188 -17.05396 -16.88979 -16.42654 -16.00802 -15.61264 -15.57997 -15.33683 -14.74183 -14.44980 -14.27171 -14.05003 -13.99756 -13.90377 -13.67227 -13.30106 -13.26811 -13.10477 -13.00906 -12.99485 -12.92485 -12.52538 -12.38456 -12.25687 -12.23972 -12.01924 -11.92311 -11.73333 -11.60300 -11.27674 -11.18549 -10.45630 -10.01547 -9.96009 -8.50216 -7.79003 -5.40213 -0.79741 -0.08724 0.38477 1.44058 1.48218 1.52287 1.97117 2.49075 2.53259 3.09031 3.24509 3.26102 3.61055 3.80978 4.00740 4.06985 4.14860 4.16690 4.31206 4.42316 4.47517 4.53164 4.57526 4.61677 4.79808 4.84283 4.88173 5.00060 5.02019 5.07058 5.13854 5.14929 5.18017 5.25075 5.29261 5.34297 5.57113 5.59078 5.66476 5.76612 5.89365 5.94515 6.50762 7.21631 7.90460 8.43706 9.15833 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.018662 B = 0.003741 C = 0.003384 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1500.031062 B = 7483.249145 C = 8272.060767 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.135 3.865 3 N -0.597 5.597 4 C -0.253 4.253 5 H 0.051 0.949 6 C -0.021 4.021 7 N -0.914 5.914 8 Si 0.934 3.066 9 H -0.278 1.278 10 H -0.295 1.295 11 H -0.278 1.278 12 C 0.163 3.837 13 C -0.070 4.070 14 H 0.076 0.924 15 C -0.118 4.118 16 C -0.019 4.019 17 C -0.147 4.147 18 C -0.026 4.026 19 C -0.674 4.674 20 S 2.515 3.485 21 C -0.625 4.625 22 O -0.973 6.973 23 O -0.980 6.980 24 C -0.031 4.031 25 C -0.149 4.149 26 H 0.049 0.951 27 H 0.035 0.965 28 H 0.064 0.936 29 H 0.030 0.970 30 H 0.043 0.957 31 H 0.250 0.750 32 H 0.070 0.930 33 H 0.019 0.981 34 H 0.060 0.940 35 H 0.047 0.953 36 H 0.030 0.970 37 H 0.147 0.853 38 H 0.163 0.837 39 H 0.154 0.846 40 H 0.156 0.844 41 H 0.147 0.853 42 H 0.148 0.852 43 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.295 -0.992 16.747 17.097 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.318 5.318 4 C -0.384 4.384 5 H 0.069 0.931 6 C -0.219 4.219 7 N -0.558 5.558 8 Si 0.763 3.237 9 H -0.204 1.204 10 H -0.221 1.221 11 H -0.204 1.204 12 C 0.036 3.964 13 C -0.090 4.090 14 H 0.095 0.905 15 C -0.176 4.176 16 C -0.020 4.020 17 C -0.165 4.165 18 C -0.045 4.045 19 C -0.760 4.760 20 S 2.698 3.302 21 C -0.779 4.779 22 O -0.970 6.970 23 O -0.978 6.978 24 C -0.050 4.050 25 C -0.168 4.168 26 H 0.068 0.932 27 H 0.055 0.945 28 H 0.083 0.917 29 H 0.048 0.952 30 H 0.062 0.938 31 H 0.060 0.940 32 H 0.087 0.913 33 H 0.038 0.962 34 H 0.079 0.921 35 H 0.066 0.934 36 H 0.049 0.951 37 H 0.165 0.835 38 H 0.181 0.819 39 H 0.172 0.828 40 H 0.174 0.826 41 H 0.166 0.834 42 H 0.166 0.834 43 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -3.511 -0.195 17.054 17.413 hybrid contribution 0.503 0.207 -1.753 1.836 sum -3.008 0.012 15.301 15.594 Atomic orbital electron populations 1.22184 0.97467 1.00718 1.00746 1.20984 0.93654 0.85834 0.98599 1.43953 1.76242 1.09347 1.02215 1.18979 1.03769 1.21085 0.94553 0.93103 1.25584 0.94039 1.02800 0.99445 1.70103 1.03539 1.38068 1.44115 0.85862 0.76671 0.80801 0.80358 1.20371 1.22113 1.20359 1.20829 0.94616 0.95769 0.85161 1.20898 1.00540 0.97377 0.90229 0.90536 1.21575 0.99134 0.96971 0.99883 1.20500 0.92904 0.92688 0.95932 1.21437 1.01211 1.01929 0.91947 1.21181 0.92965 0.91565 0.98766 1.30633 1.09645 1.14336 1.21356 1.04604 0.76283 0.75736 0.73549 1.30035 1.16767 1.16883 1.14235 1.93523 1.44700 1.87482 1.71344 1.93527 1.80443 1.39327 1.84461 1.21042 0.96920 0.95670 0.91385 1.21236 0.98889 0.98681 0.98025 0.93214 0.94540 0.91688 0.95162 0.93818 0.94028 0.91265 0.96222 0.92097 0.93447 0.95116 0.83536 0.81942 0.82757 0.82614 0.83407 0.83414 0.86817 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.98 10.21 71.98 0.73 -4.24 16 2 C 0.13 5.35 6.44 86.38 0.56 5.90 16 3 N -0.60 -27.82 2.31 -702.00 -1.62 -29.44 16 4 C -0.25 -13.09 7.39 84.03 0.62 -12.47 16 5 H 0.05 2.67 7.92 -2.91 -0.02 2.64 16 6 C -0.02 -1.10 4.95 84.86 0.42 -0.68 16 7 N -0.91 -51.12 11.50 21.65 0.25 -50.88 16 8 Si 0.93 43.19 29.61 68.60 2.03 45.22 16 9 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 10 H -0.29 -13.78 7.11 99.48 0.71 -13.07 16 11 H -0.28 -12.59 7.11 99.48 0.71 -11.88 16 12 C 0.16 7.15 4.58 86.38 0.40 7.54 16 13 C -0.07 -2.55 2.77 -11.54 -0.03 -2.59 16 14 H 0.08 2.62 6.21 -2.39 -0.01 2.61 16 15 C -0.12 -4.62 8.56 71.98 0.62 -4.00 16 16 C -0.02 -0.63 4.78 -19.87 -0.09 -0.73 16 17 C -0.15 -3.89 9.67 22.27 0.22 -3.67 16 18 C -0.03 -0.61 9.47 22.27 0.21 -0.40 16 19 C -0.67 -15.95 5.66 22.27 0.13 -15.82 16 20 S 2.52 46.63 5.80 -56.49 -0.33 46.30 16 21 C -0.63 -4.92 10.80 113.37 1.22 -3.70 16 22 O -0.97 -23.38 17.13 -127.65 -2.19 -25.57 16 23 O -0.98 -25.55 17.12 -127.65 -2.19 -27.73 16 24 C -0.03 -0.87 9.47 22.27 0.21 -0.66 16 25 C -0.15 -4.95 8.76 22.27 0.20 -4.75 16 26 H 0.05 1.56 6.47 -2.39 -0.02 1.55 16 27 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 28 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.03 1.26 8.08 -2.39 -0.02 1.24 16 30 H 0.04 1.62 7.83 -2.39 -0.02 1.60 16 31 H 0.25 13.71 8.31 -92.70 -0.77 12.94 16 32 H 0.07 3.50 4.97 -2.39 -0.01 3.49 16 33 H 0.02 0.84 7.86 -2.39 -0.02 0.82 16 34 H 0.06 2.62 6.35 -2.39 -0.02 2.60 16 35 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 36 H 0.03 1.27 7.39 -2.39 -0.02 1.25 16 37 H 0.15 3.22 7.95 -2.91 -0.02 3.20 16 38 H 0.16 2.81 7.57 -2.91 -0.02 2.79 16 39 H 0.15 0.68 8.14 -2.39 -0.02 0.66 16 40 H 0.16 0.55 8.14 -2.38 -0.02 0.53 16 41 H 0.15 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.15 3.61 7.57 -2.91 -0.02 3.58 16 43 H 0.11 4.18 7.16 -2.91 -0.02 4.16 16 Total: -1.00 -70.41 358.76 2.35 -68.07 By element: Atomic # 1 Polarization: 13.31 SS G_CDS: 0.99 Total: 14.30 kcal Atomic # 6 Polarization: -45.66 SS G_CDS: 5.40 Total: -40.26 kcal Atomic # 7 Polarization: -78.95 SS G_CDS: -1.37 Total: -80.32 kcal Atomic # 8 Polarization: -48.92 SS G_CDS: -4.37 Total: -53.30 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.22 kcal Atomic # 16 Polarization: 46.63 SS G_CDS: -0.33 Total: 46.30 kcal Total: -70.41 2.35 -68.07 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000449019708.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.342 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.072 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.066 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds