Wall clock time and date at job start Tue Mar 31 2020 10:06:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31512 * 1 3 3 Si 1.86799 * 119.99998 * 2 1 4 4 H 1.48506 * 109.47375 * 240.00271 * 3 2 1 5 5 H 1.48498 * 109.47077 * 0.02562 * 3 2 1 6 6 H 1.48499 * 109.47304 * 120.00606 * 3 2 1 7 7 C 1.37882 * 120.00415 * 180.02562 * 2 1 3 8 8 H 1.07995 * 120.00262 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99261 * 359.97438 * 7 2 1 10 10 C 1.53000 * 109.46600 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47020 * 179.97438 * 10 9 7 12 12 N 1.46507 * 109.47140 * 179.97438 * 11 10 9 13 13 C 1.38416 * 119.99725 * 179.97438 * 12 11 10 14 14 N 1.32525 * 119.07446 * 359.73413 * 13 12 11 15 15 C 1.32632 * 121.25793 * 180.41881 * 14 13 12 16 16 C 1.37803 * 118.76430 * 0.03497 * 15 14 13 17 17 C 1.40034 * 118.63077 * 359.76518 * 16 15 14 18 18 N 1.32449 * 119.51268 * 0.27052 * 17 16 15 19 19 C 1.47891 * 117.75492 * 180.56824 * 17 16 15 20 20 C 1.38857 * 121.83114 * 195.41798 * 19 17 16 21 21 C 1.38130 * 119.63826 * 179.70104 * 20 19 17 22 22 C 1.38447 * 120.20880 * 0.02687 * 21 20 19 23 23 C 1.38188 * 120.55280 * 0.07285 * 22 21 20 24 24 C 1.38477 * 119.96008 * 0.02960 * 23 22 21 25 25 O 1.35571 * 120.93667 * 179.33838 * 24 23 22 26 26 C 1.42803 * 118.44792 * 145.92198 * 25 24 23 27 27 H 0.96996 * 119.99711 * 359.97438 * 1 2 3 28 28 H 1.09000 * 109.47172 * 60.00370 * 9 7 2 29 29 H 1.08994 * 109.47283 * 299.99875 * 9 7 2 30 30 H 1.09003 * 109.47423 * 60.00361 * 10 9 7 31 31 H 1.08998 * 109.47819 * 300.00016 * 10 9 7 32 32 H 1.09004 * 109.47213 * 60.00369 * 11 10 9 33 33 H 1.08994 * 109.47266 * 300.00277 * 11 10 9 34 34 H 0.96998 * 120.00102 * 0.02562 * 12 11 10 35 35 H 1.08004 * 120.62257 * 180.02562 * 15 14 13 36 36 H 1.07999 * 120.18207 * 359.72241 * 20 19 17 37 37 H 1.08001 * 119.89602 * 180.02562 * 21 20 19 38 38 H 1.08008 * 119.72402 * 180.10219 * 22 21 20 39 39 H 1.08006 * 120.02243 * 179.97438 * 23 22 21 40 40 H 1.08996 * 109.33933 * 168.19138 * 26 25 24 41 41 H 1.09002 * 109.33703 * 287.86462 * 26 25 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.1029 1.6965 -1.2126 5 1 1.2841 2.7464 0.0006 6 1 3.1030 1.6964 1.2124 7 6 2.0046 -1.1940 -0.0005 8 1 3.0846 -1.1940 -0.0010 9 6 1.2510 -2.4992 -0.0005 10 6 2.2453 -3.6620 -0.0018 11 6 1.4803 -4.9871 -0.0012 12 7 2.4324 -6.1006 -0.0030 13 6 1.9710 -7.4056 -0.0023 14 7 0.6643 -7.6266 0.0055 15 6 0.1749 -8.8593 0.0148 16 6 1.0529 -9.9214 0.0170 17 6 2.4277 -9.6555 0.0044 18 7 2.8494 -8.3999 -0.0039 19 6 3.3524 -10.8096 -0.0059 20 6 4.7008 -10.6705 0.2951 21 6 5.5226 -11.7805 0.2779 22 6 5.0055 -13.0253 -0.0384 23 6 3.6654 -13.1729 -0.3413 24 6 2.8284 -12.0698 -0.3306 25 8 1.5133 -12.1897 -0.6375 26 6 0.5778 -11.3473 0.0366 27 1 -0.4849 0.8400 0.0004 28 1 0.6241 -2.5567 -0.8903 29 1 0.6247 -2.5571 0.8896 30 1 2.8726 -3.6048 0.8877 31 1 2.8713 -3.6040 -0.8922 32 1 0.8527 -5.0447 -0.8905 33 1 0.8547 -5.0449 0.8894 34 1 3.3860 -5.9234 -0.0040 35 1 -0.8920 -9.0276 0.0206 36 1 5.1046 -9.6997 0.5418 37 1 6.5719 -11.6771 0.5118 38 1 5.6549 -13.8883 -0.0479 39 1 3.2711 -14.1479 -0.5872 40 1 -0.3900 -11.4122 -0.4606 41 1 0.4752 -11.6768 1.0706 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001168426721.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:06:33 Heat of formation + Delta-G solvation = 33.469354 kcal Electronic energy + Delta-G solvation = -23776.007450 eV Core-core repulsion = 20234.766256 eV Total energy + Delta-G solvation = -3541.241193 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -41.64515 -39.98900 -37.84824 -36.49867 -34.16107 -33.88414 -32.52724 -31.04113 -30.79619 -30.39453 -27.03914 -25.77458 -25.14424 -23.71192 -22.89811 -22.18641 -20.84867 -20.45377 -18.68643 -17.95880 -17.58920 -16.49544 -16.37019 -16.05098 -15.73804 -15.37698 -14.86212 -14.53338 -14.49759 -14.29735 -14.24826 -14.08371 -13.64176 -13.22130 -13.11340 -12.34466 -12.28959 -12.05682 -11.82915 -11.64349 -11.49811 -11.07353 -10.92691 -10.77020 -10.65435 -10.59420 -10.36917 -9.80252 -9.51142 -9.18467 -9.16414 -9.13667 -8.58996 -8.38471 -7.90719 -6.03382 -4.06388 0.26206 1.01709 1.07484 1.58095 2.85227 2.95352 3.31457 3.36027 3.38358 3.41549 3.81159 3.89913 4.24298 4.34307 4.42599 4.50490 4.58537 4.73358 4.79363 4.93795 5.02932 5.09057 5.20992 5.25312 5.32410 5.51208 5.64200 5.70952 5.74947 5.87297 6.04409 6.05848 6.12937 6.17616 6.37627 6.57139 6.60941 6.85627 6.93279 7.02136 7.15248 7.52237 7.61014 7.73462 7.95088 8.33231 8.36773 8.99799 9.57751 11.07842 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.029297 B = 0.002205 C = 0.002060 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.492065 B =12695.507327 C =13587.741766 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.894 5.894 2 C 0.057 3.943 3 Si 0.894 3.106 4 H -0.277 1.277 5 H -0.287 1.287 6 H -0.277 1.277 7 C -0.523 4.523 8 H 0.055 0.945 9 C 0.026 3.974 10 C -0.123 4.123 11 C 0.132 3.868 12 N -0.686 5.686 13 C 0.575 3.425 14 N -0.566 5.566 15 C 0.216 3.784 16 C -0.321 4.321 17 C 0.278 3.722 18 N -0.561 5.561 19 C -0.127 4.127 20 C -0.038 4.038 21 C -0.156 4.156 22 C -0.071 4.071 23 C -0.153 4.153 24 C 0.153 3.847 25 O -0.314 6.314 26 C 0.137 3.863 27 H 0.262 0.738 28 H 0.019 0.981 29 H 0.019 0.981 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.066 0.934 33 H 0.066 0.934 34 H 0.413 0.587 35 H 0.171 0.829 36 H 0.138 0.862 37 H 0.130 0.870 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.118 0.882 41 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.343 -29.081 0.958 29.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.533 5.533 2 C -0.145 4.145 3 Si 0.722 3.278 4 H -0.202 1.202 5 H -0.213 1.213 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.073 0.927 9 C -0.011 4.011 10 C -0.161 4.161 11 C 0.009 3.991 12 N -0.319 5.319 13 C 0.218 3.782 14 N -0.289 5.289 15 C 0.049 3.951 16 C -0.330 4.330 17 C 0.128 3.872 18 N -0.283 5.283 19 C -0.129 4.129 20 C -0.057 4.057 21 C -0.174 4.174 22 C -0.089 4.089 23 C -0.171 4.171 24 C 0.106 3.894 25 O -0.227 6.227 26 C 0.061 3.939 27 H 0.071 0.929 28 H 0.038 0.962 29 H 0.038 0.962 30 H 0.073 0.927 31 H 0.074 0.926 32 H 0.084 0.916 33 H 0.084 0.916 34 H 0.250 0.750 35 H 0.188 0.812 36 H 0.156 0.844 37 H 0.148 0.852 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.136 0.864 41 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 5.277 -27.831 0.816 28.338 hybrid contribution 0.469 0.527 0.099 0.712 sum 5.745 -27.303 0.916 27.916 Atomic orbital electron populations 1.69950 1.06044 1.26818 1.50469 1.25026 0.94876 0.99304 0.95245 0.86633 0.79561 0.83036 0.78618 1.20229 1.21257 1.20239 1.21164 0.92983 0.90925 1.51081 0.92689 1.19007 0.93761 0.90701 0.97665 1.21922 0.99909 0.93192 1.01041 1.21692 0.91284 0.83952 1.02126 1.44667 1.10435 1.00493 1.76348 1.19457 0.84839 0.86818 0.87048 1.68033 1.13683 1.24353 1.22847 1.22514 0.99969 0.85663 0.86914 1.21521 0.95640 0.98568 1.17311 1.19133 0.90292 0.89859 0.87916 1.67852 1.38252 0.98715 1.23498 1.18559 0.94247 0.90483 1.09592 1.21090 0.91143 0.99577 0.93928 1.21158 1.00339 0.92430 1.03506 1.21142 0.94182 0.97804 0.95790 1.20569 0.93472 0.97268 1.05802 1.18983 0.83818 0.91928 0.94627 1.85803 1.13732 1.60414 1.62800 1.21289 0.90813 0.84156 0.97659 0.92861 0.96232 0.96228 0.92658 0.92643 0.91604 0.91583 0.74990 0.81218 0.84440 0.85202 0.85001 0.84596 0.86442 0.91162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.72 13.29 55.43 0.74 -25.98 16 2 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 3 Si 0.89 21.56 29.54 -169.99 -5.02 16.53 16 4 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 5 H -0.29 -6.85 7.11 56.52 0.40 -6.45 16 6 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 7 C -0.52 -14.64 9.11 -34.44 -0.31 -14.96 16 8 H 0.05 1.49 7.74 -52.49 -0.41 1.08 16 9 C 0.03 0.67 4.97 -27.88 -0.14 0.53 16 10 C -0.12 -2.42 5.27 -26.73 -0.14 -2.56 16 11 C 0.13 2.32 5.64 -4.04 -0.02 2.30 16 12 N -0.69 -10.88 5.71 -62.25 -0.36 -11.23 16 13 C 0.58 9.31 8.42 -322.52 -2.72 6.60 16 14 N -0.57 -8.82 9.56 -14.00 -0.13 -8.96 16 15 C 0.22 2.59 11.07 -17.37 -0.19 2.39 16 16 C -0.32 -3.78 5.83 -104.30 -0.61 -4.39 16 17 C 0.28 3.84 6.72 -82.98 -0.56 3.29 16 18 N -0.56 -8.63 10.11 -10.58 -0.11 -8.74 16 19 C -0.13 -1.53 5.82 -104.95 -0.61 -2.14 16 20 C -0.04 -0.40 9.69 -39.39 -0.38 -0.78 16 21 C -0.16 -1.25 10.04 -39.54 -0.40 -1.65 16 22 C -0.07 -0.50 10.02 -39.52 -0.40 -0.90 16 23 C -0.15 -1.28 10.00 -39.51 -0.40 -1.67 16 24 C 0.15 1.65 6.47 -38.73 -0.25 1.40 16 25 O -0.31 -3.30 10.31 -18.41 -0.19 -3.49 16 26 C 0.14 1.17 7.00 35.81 0.25 1.42 16 27 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 28 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 29 H 0.02 0.52 8.14 -51.93 -0.42 0.10 16 30 H 0.05 1.06 8.14 -51.93 -0.42 0.64 16 31 H 0.05 1.07 8.14 -51.93 -0.42 0.65 16 32 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 33 H 0.07 1.20 8.14 -51.93 -0.42 0.78 16 34 H 0.41 5.94 8.59 -40.82 -0.35 5.59 16 35 H 0.17 1.33 8.06 -52.48 -0.42 0.91 16 36 H 0.14 1.44 7.89 -52.49 -0.41 1.03 16 37 H 0.13 0.74 8.06 -52.49 -0.42 0.31 16 38 H 0.13 0.55 8.06 -52.48 -0.42 0.13 16 39 H 0.14 0.86 8.06 -52.48 -0.42 0.44 16 40 H 0.12 0.66 8.11 -51.93 -0.42 0.24 16 41 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 LS Contribution 351.22 15.07 5.29 5.29 Total: -1.00 -32.91 351.22 -12.12 -45.03 By element: Atomic # 1 Polarization: 6.52 SS G_CDS: -5.38 Total: 1.14 kcal Atomic # 6 Polarization: -2.63 SS G_CDS: -6.97 Total: -9.60 kcal Atomic # 7 Polarization: -55.05 SS G_CDS: 0.14 Total: -54.91 kcal Atomic # 8 Polarization: -3.30 SS G_CDS: -0.19 Total: -3.49 kcal Atomic # 14 Polarization: 21.56 SS G_CDS: -5.02 Total: 16.53 kcal Total LS contribution 5.29 Total: 5.29 kcal Total: -32.91 -12.12 -45.03 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001168426721.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.499 kcal (2) G-P(sol) polarization free energy of solvation -32.906 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 45.593 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.124 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.030 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.469 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds