Wall clock time and date at job start Tue Mar 31 2020 09:39:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46496 * 1 3 3 C 1.34777 * 119.99889 * 2 1 4 4 O 1.21582 * 119.99845 * 359.97438 * 3 2 1 5 5 C 1.47664 * 120.00166 * 180.02562 * 3 2 1 6 6 C 1.39796 * 119.99653 * 179.97438 * 5 3 2 7 7 C 1.36601 * 120.00484 * 179.97438 * 6 5 3 8 8 C 1.39836 * 119.99390 * 0.02562 * 7 6 5 9 9 C 1.47688 * 120.00274 * 179.97438 * 8 7 6 10 10 C 1.39243 * 120.22778 * 310.00151 * 9 8 7 11 11 C 1.37917 * 120.16750 * 180.02562 * 10 9 8 12 12 C 1.39489 * 120.62288 * 0.23459 * 11 10 9 13 13 O 1.35851 * 119.77375 * 179.72453 * 12 11 10 14 14 C 1.42897 * 116.99911 * 359.97438 * 13 12 11 15 15 C 1.37965 * 120.44686 * 359.47823 * 12 11 10 16 16 C 1.40635 * 119.82191 * 0.54276 * 15 12 11 17 17 C 1.40844 * 120.31043 * 179.73942 * 16 15 12 18 18 H 1.07994 * 120.00537 * 154.02448 * 17 16 15 19 19 C 1.40128 * 119.99589 * 334.03022 * 17 16 15 20 20 N 1.30735 * 119.99864 * 344.28535 * 19 17 16 21 21 Si 1.86804 * 120.00011 * 164.29091 * 19 17 16 22 22 H 1.48497 * 109.47288 * 59.99580 * 21 19 17 23 23 H 1.48496 * 109.46905 * 179.97438 * 21 19 17 24 24 H 1.48493 * 109.46914 * 299.99755 * 21 19 17 25 25 C 1.39839 * 119.99060 * 0.25404 * 8 7 6 26 26 C 1.36593 * 119.99544 * 359.50874 * 25 8 7 27 27 H 1.09000 * 109.47188 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.47770 * 300.00117 * 1 2 3 29 29 H 1.09006 * 109.47221 * 60.00642 * 1 2 3 30 30 H 0.97004 * 120.00020 * 179.97438 * 2 1 3 31 31 H 1.08004 * 120.00133 * 359.97438 * 6 5 3 32 32 H 1.08007 * 120.00282 * 180.02562 * 7 6 5 33 33 H 1.08001 * 119.91447 * 0.02562 * 10 9 8 34 34 H 1.07997 * 119.68967 * 179.97438 * 11 10 9 35 35 H 1.08999 * 109.47140 * 60.00652 * 14 13 12 36 36 H 1.09006 * 109.46667 * 179.97438 * 14 13 12 37 37 H 1.08993 * 109.47375 * 300.00049 * 14 13 12 38 38 H 1.08001 * 120.08635 * 180.25782 * 15 12 11 39 39 H 0.97002 * 119.99621 * 180.02562 * 20 19 17 40 40 H 1.08007 * 119.99756 * 179.74345 * 25 8 7 41 41 H 1.07999 * 119.99724 * 180.21466 * 26 25 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 1.5309 2.2201 -0.0005 5 6 3.6155 1.1673 -0.0006 6 6 4.3143 2.3780 -0.0011 7 6 5.6803 2.3783 -0.0011 8 6 6.3796 1.1673 -0.0011 9 6 7.8565 1.1674 -0.0017 10 6 8.5571 1.9406 -0.9237 11 6 9.9363 1.9393 -0.9235 12 6 10.6459 1.1633 -0.0070 13 8 12.0043 1.1707 -0.0258 14 6 12.6350 1.9938 -1.0090 15 6 9.9777 0.3922 0.9216 16 6 8.5715 0.3790 0.9378 17 6 7.8788 -0.4086 1.8778 18 1 6.8813 -0.1310 2.1846 19 6 8.4842 -1.5525 2.4151 20 7 9.5402 -2.0648 1.8393 21 14 7.7821 -2.3455 3.9538 22 1 6.3814 -2.7673 3.6983 23 1 8.5979 -3.5326 4.3151 24 1 7.8085 -1.3675 5.0708 25 6 5.6803 -0.0436 -0.0065 26 6 4.3144 -0.0435 -0.0016 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3635 0.5138 0.8899 29 1 -0.3634 0.5138 -0.8901 30 1 1.9500 -0.8401 0.0004 31 1 3.7742 3.3133 -0.0015 32 1 6.2202 3.3137 -0.0011 33 1 8.0191 2.5428 -1.6409 34 1 10.4719 2.5416 -1.6424 35 1 12.3386 3.0318 -0.8582 36 1 13.7175 1.9081 -0.9143 37 1 12.3301 1.6698 -2.0040 38 1 10.5330 -0.2032 1.6312 39 1 9.9590 -2.8568 2.2111 40 1 6.2203 -0.9790 -0.0107 41 1 3.7743 -0.9787 -0.0022 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001240567708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 09:39:09 Heat of formation + Delta-G solvation = -51.821648 kcal Electronic energy + Delta-G solvation = -24599.075514 eV Core-core repulsion = 21021.843074 eV Total energy + Delta-G solvation = -3577.232440 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.131 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.18338 -40.50589 -39.42137 -37.79189 -35.69756 -35.45590 -32.98066 -32.12738 -31.43886 -30.07210 -28.34050 -27.21541 -26.95705 -24.45685 -23.42609 -22.58074 -21.96865 -21.08956 -19.55939 -19.11308 -17.96302 -17.25688 -17.09772 -16.78606 -16.39749 -16.34370 -16.20445 -15.75842 -15.38243 -15.05201 -14.75844 -14.54293 -14.29824 -14.23078 -13.97079 -13.57383 -13.51733 -13.19914 -13.07256 -12.99975 -12.82303 -12.70114 -12.50116 -12.08822 -11.92581 -11.68921 -11.59725 -11.32090 -11.04016 -10.99526 -10.21252 -9.89313 -9.65985 -9.39955 -8.75896 -8.42945 -6.35812 -0.15115 0.63363 0.96452 1.09491 1.39952 1.49939 1.54715 1.95811 2.19341 2.29026 2.69453 2.78155 3.04193 3.68525 3.82775 4.00775 4.12422 4.20096 4.33530 4.46925 4.47978 4.50755 4.56342 4.57583 4.64279 4.71300 4.75370 4.93386 4.99700 5.06136 5.12054 5.20121 5.33011 5.40019 5.46094 5.48032 5.53547 5.77540 5.89274 5.93026 6.05326 6.16053 6.17988 6.47824 6.52329 6.88002 6.91710 7.03638 7.20396 8.29017 Molecular weight = 311.13amu Principal moments of inertia in cm(-1) A = 0.012713 B = 0.004265 C = 0.003316 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2201.907141 B = 6563.780967 C = 8440.695559 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.084 3.916 2 N -0.723 5.723 3 C 0.562 3.438 4 O -0.585 6.585 5 C -0.176 4.176 6 C -0.061 4.061 7 C -0.143 4.143 8 C 0.037 3.963 9 C -0.225 4.225 10 C -0.040 4.040 11 C -0.316 4.316 12 C 0.131 3.869 13 O -0.351 6.351 14 C 0.026 3.974 15 C -0.231 4.231 16 C 0.134 3.866 17 C -0.465 4.465 18 H 0.085 0.915 19 C 0.041 3.959 20 N -0.810 5.810 21 Si 0.970 3.030 22 H -0.251 1.251 23 H -0.270 1.270 24 H -0.266 1.266 25 C -0.121 4.121 26 C -0.072 4.072 27 H 0.113 0.887 28 H 0.051 0.949 29 H 0.053 0.947 30 H 0.415 0.585 31 H 0.131 0.869 32 H 0.130 0.870 33 H 0.122 0.878 34 H 0.127 0.873 35 H 0.057 0.943 36 H 0.115 0.885 37 H 0.054 0.946 38 H 0.103 0.897 39 H 0.289 0.711 40 H 0.120 0.880 41 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.843 -0.154 -3.459 8.574 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.059 4.059 2 N -0.374 5.374 3 C 0.351 3.649 4 O -0.467 6.467 5 C -0.179 4.179 6 C -0.080 4.080 7 C -0.161 4.161 8 C 0.036 3.964 9 C -0.227 4.227 10 C -0.058 4.058 11 C -0.336 4.336 12 C 0.086 3.914 13 O -0.266 6.266 14 C -0.068 4.068 15 C -0.251 4.251 16 C 0.131 3.869 17 C -0.494 4.494 18 H 0.103 0.897 19 C -0.176 4.176 20 N -0.434 5.434 21 Si 0.791 3.209 22 H -0.174 1.174 23 H -0.194 1.194 24 H -0.190 1.190 25 C -0.139 4.139 26 C -0.091 4.091 27 H 0.132 0.868 28 H 0.070 0.930 29 H 0.072 0.928 30 H 0.253 0.747 31 H 0.149 0.851 32 H 0.148 0.852 33 H 0.140 0.860 34 H 0.145 0.855 35 H 0.076 0.924 36 H 0.133 0.867 37 H 0.073 0.927 38 H 0.121 0.879 39 H 0.100 0.900 40 H 0.138 0.862 41 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -8.012 0.242 -3.347 8.687 hybrid contribution 0.530 -0.587 0.462 0.915 sum -7.482 -0.345 -2.886 8.027 Atomic orbital electron populations 1.21723 0.78081 1.04455 1.01656 1.45699 1.08721 1.08350 1.74668 1.18394 0.87434 0.83912 0.75159 1.90709 1.70760 1.32747 1.52467 1.19851 0.92208 0.94833 1.11014 1.20895 0.93611 0.97739 0.95719 1.21092 0.93750 0.97766 1.03487 1.19090 0.92292 0.93195 0.91804 1.18858 0.91379 1.09702 1.02752 1.20712 0.93215 0.95573 0.96306 1.20690 0.94899 1.11074 1.06929 1.19167 0.81401 0.95377 0.95424 1.85968 1.18023 1.66135 1.56447 1.23149 0.98583 0.94164 0.90913 1.20525 0.94459 1.06610 1.03505 1.17508 0.90490 0.88925 0.89970 1.19684 1.02213 1.06954 1.20505 0.89734 1.26737 0.94184 0.97033 0.99653 1.69853 1.18183 1.18427 1.36947 0.85416 0.79833 0.77853 0.77817 1.17430 1.19411 1.19042 1.21092 0.94047 0.98153 1.00638 1.21091 0.93724 0.97347 0.96925 0.86838 0.93002 0.92803 0.74716 0.85077 0.85173 0.86028 0.85530 0.92407 0.86653 0.92715 0.87875 0.89964 0.86208 0.82968 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.37 10.70 127.77 1.37 2.74 16 2 N -0.72 -15.22 5.66 -487.64 -2.76 -17.98 16 3 C 0.56 16.90 7.77 86.73 0.67 17.57 16 4 O -0.58 -21.49 16.33 -3.97 -0.06 -21.55 16 5 C -0.18 -5.53 5.88 -20.03 -0.12 -5.65 16 6 C -0.06 -2.02 9.53 22.26 0.21 -1.81 16 7 C -0.14 -5.07 9.45 22.27 0.21 -4.86 16 8 C 0.04 1.46 4.92 -20.01 -0.10 1.37 16 9 C -0.23 -10.29 5.52 -19.62 -0.11 -10.39 16 10 C -0.04 -1.67 9.48 22.44 0.21 -1.46 16 11 C -0.32 -13.28 9.02 22.50 0.20 -13.07 16 12 C 0.13 6.19 6.68 22.51 0.15 6.34 16 13 O -0.35 -14.99 10.48 -91.88 -0.96 -15.95 16 14 C 0.03 0.77 9.80 113.37 1.11 1.88 16 15 C -0.23 -12.20 8.60 22.79 0.20 -12.00 16 16 C 0.13 6.86 5.56 -21.13 -0.12 6.74 16 17 C -0.47 -23.14 7.14 23.37 0.17 -22.98 16 18 H 0.08 4.09 6.59 -2.91 -0.02 4.07 16 19 C 0.04 1.96 5.17 85.32 0.44 2.40 16 20 N -0.81 -40.63 10.92 21.86 0.24 -40.39 16 21 Si 0.97 36.16 29.59 68.60 2.03 38.19 16 22 H -0.25 -8.77 7.11 99.48 0.71 -8.06 16 23 H -0.27 -9.63 7.11 99.48 0.71 -8.92 16 24 H -0.27 -10.00 7.11 99.48 0.71 -9.30 16 25 C -0.12 -4.49 7.92 22.27 0.18 -4.31 16 26 C -0.07 -2.15 9.48 22.26 0.21 -1.94 16 27 H 0.11 0.95 8.14 -2.39 -0.02 0.93 16 28 H 0.05 0.94 8.14 -2.39 -0.02 0.92 16 29 H 0.05 0.95 8.14 -2.38 -0.02 0.93 16 30 H 0.42 6.45 6.84 -92.71 -0.63 5.82 16 31 H 0.13 4.16 7.64 -2.91 -0.02 4.14 16 32 H 0.13 4.28 8.04 -2.91 -0.02 4.26 16 33 H 0.12 4.34 8.03 -2.91 -0.02 4.32 16 34 H 0.13 4.45 6.25 -2.91 -0.02 4.44 16 35 H 0.06 1.54 7.64 -2.39 -0.02 1.53 16 36 H 0.12 2.59 8.14 -2.38 -0.02 2.57 16 37 H 0.05 1.50 7.65 -2.39 -0.02 1.48 16 38 H 0.10 5.85 6.18 -2.91 -0.02 5.83 16 39 H 0.29 13.26 8.29 -92.71 -0.77 12.49 16 40 H 0.12 4.80 7.31 -2.91 -0.02 4.78 16 41 H 0.15 3.23 6.38 -2.91 -0.02 3.21 16 Total: -1.00 -65.50 346.34 3.81 -61.69 By element: Atomic # 1 Polarization: 34.99 SS G_CDS: 0.44 Total: 35.43 kcal Atomic # 6 Polarization: -44.33 SS G_CDS: 4.89 Total: -39.44 kcal Atomic # 7 Polarization: -55.86 SS G_CDS: -2.52 Total: -58.38 kcal Atomic # 8 Polarization: -36.48 SS G_CDS: -1.03 Total: -37.50 kcal Atomic # 14 Polarization: 36.16 SS G_CDS: 2.03 Total: 38.19 kcal Total: -65.50 3.81 -61.69 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001240567708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 9.873 kcal (2) G-P(sol) polarization free energy of solvation -65.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.631 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.695 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.822 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds