Wall clock time and date at job start Tue Mar 31 2020 11:04:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.35015 * 125.52737 * 2 1 4 4 C 1.41186 * 108.24138 * 179.97438 * 3 2 1 5 5 N 1.32904 * 126.37752 * 179.97438 * 4 3 2 6 6 C 1.34043 * 120.00471 * 0.02562 * 5 4 3 7 7 O 1.21988 * 119.99552 * 359.72238 * 6 5 4 8 8 C 1.46856 * 120.00081 * 180.02562 * 6 5 4 9 9 C 1.34630 * 119.99914 * 179.72675 * 8 6 5 10 10 C 1.47256 * 120.00092 * 179.97438 * 9 8 6 11 11 C 1.39812 * 120.16596 * 359.72206 * 10 9 8 12 12 C 1.37903 * 119.82681 * 179.72228 * 11 10 9 13 13 C 1.38399 * 120.16761 * 0.57676 * 12 11 10 14 14 C 1.38397 * 120.34072 * 359.69658 * 13 12 11 15 15 C 1.37896 * 120.16691 * 0.02562 * 14 13 12 16 16 N 1.37482 * 107.23669 * 0.24099 * 4 3 2 17 17 H 0.97002 * 126.36696 * 179.72216 * 16 4 3 18 18 N 1.36442 * 125.52100 * 179.97438 * 2 1 3 19 19 C 1.46501 * 125.84682 * 0.03931 * 18 2 1 20 20 C 1.50696 * 109.47395 * 84.99551 * 19 18 2 21 21 H 1.07999 * 120.00218 * 0.02562 * 20 19 18 22 22 C 1.37876 * 119.99945 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00123 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99845 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47040 * 0.02562 * 24 22 20 26 26 H 1.48498 * 109.46890 * 120.00437 * 24 22 20 27 27 H 1.48503 * 109.46991 * 240.00302 * 24 22 20 28 28 H 1.08993 * 109.47406 * 90.02147 * 1 2 3 29 29 H 1.08998 * 109.47153 * 210.02788 * 1 2 3 30 30 H 1.09010 * 109.46580 * 330.02723 * 1 2 3 31 31 H 1.07998 * 125.87621 * 359.97438 * 3 2 1 32 32 H 1.08000 * 119.99599 * 359.72284 * 8 6 5 33 33 H 1.08005 * 120.00030 * 359.97438 * 9 8 6 34 34 H 1.08002 * 120.08759 * 359.97438 * 11 10 9 35 35 H 1.08001 * 119.91604 * 180.31360 * 12 11 10 36 36 H 1.08001 * 119.82665 * 179.71684 * 13 12 11 37 37 H 1.07996 * 119.91363 * 180.02562 * 14 13 12 38 38 H 1.08003 * 120.08431 * 180.02562 * 15 14 13 39 39 H 1.09000 * 109.46413 * 204.99591 * 19 18 2 40 40 H 1.09001 * 109.47346 * 324.99183 * 19 18 2 41 41 H 0.97002 * 120.00310 * 179.97438 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.2915 1.0988 0.0000 4 6 3.6396 0.6793 0.0006 5 7 4.7102 1.4668 0.0003 6 6 4.5624 2.7990 -0.0001 7 8 3.4451 3.2886 -0.0054 8 6 5.7455 3.6691 -0.0010 9 6 5.5970 5.0072 -0.0070 10 6 6.7832 5.8797 -0.0073 11 6 8.0653 5.3222 0.0044 12 6 9.1714 6.1458 -0.0018 13 6 9.0147 7.5209 -0.0075 14 6 7.7487 8.0801 -0.0134 15 6 6.6331 7.2697 -0.0131 16 7 3.6385 -0.6955 -0.0046 17 1 4.4191 -1.2714 -0.0093 18 7 2.2997 -1.1105 0.0005 19 6 1.8317 -2.4987 0.0003 20 6 1.5545 -2.9353 -1.4152 21 1 1.7117 -2.2476 -2.2330 22 6 1.1012 -4.2129 -1.6663 23 7 0.9103 -5.0505 -0.6705 24 14 0.7570 -4.7538 -3.4209 25 1 1.0489 -3.6332 -4.3505 26 1 1.6192 -5.9145 -3.7592 27 1 -0.6703 -5.1438 -3.5476 28 1 -0.3634 -0.0004 -1.0276 29 1 -0.3633 -0.8897 0.5143 30 1 -0.3633 0.8903 0.5135 31 1 1.9471 2.1224 -0.0004 32 1 6.7346 3.2355 0.0032 33 1 4.6077 5.4407 -0.0116 34 1 8.1892 4.2494 0.0142 35 1 10.1625 5.7167 0.0022 36 1 9.8847 8.1607 -0.0077 37 1 7.6344 9.1540 -0.0183 38 1 5.6458 7.7076 -0.0182 39 1 2.5980 -3.1405 0.4350 40 1 0.9176 -2.5741 0.5894 41 1 0.5910 -5.9493 -0.8472 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000492265310.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 11:04:59 Heat of formation + Delta-G solvation = 98.658085 kcal Electronic energy + Delta-G solvation = -23351.987184 eV Core-core repulsion = 19813.572786 eV Total energy + Delta-G solvation = -3538.414398 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.64 seconds Orbital eigenvalues (eV) -40.93426 -39.31971 -38.37671 -34.53711 -33.81130 -33.14952 -32.26065 -31.12230 -30.75229 -29.50955 -27.56350 -26.84794 -24.50928 -23.14123 -22.66597 -21.81893 -20.22719 -19.65255 -18.42704 -17.39279 -17.06885 -16.71963 -15.90194 -15.45189 -15.16938 -14.96032 -14.84659 -14.36153 -14.11514 -13.73372 -13.50416 -13.36425 -13.03061 -12.95656 -12.82856 -12.70329 -12.48057 -12.12450 -11.93605 -11.79825 -11.37445 -11.29495 -11.10107 -10.97568 -10.55202 -10.41010 -10.20674 -9.48171 -9.44428 -9.09630 -8.95382 -8.89725 -8.41159 -8.19971 -6.97139 -6.52457 -4.68369 0.62144 1.27691 1.60143 2.01540 2.33331 3.02262 3.11975 3.14271 3.17489 3.80310 4.02538 4.17013 4.60681 4.64813 4.71689 4.78527 4.81480 4.94289 4.98956 5.18314 5.31196 5.39891 5.48481 5.51194 5.77156 5.82818 5.83218 5.91324 6.08431 6.13219 6.18319 6.26563 6.32953 6.36068 6.47257 6.57569 6.71408 6.74272 6.80929 6.86215 7.35424 7.45570 7.48958 7.62916 7.93823 8.26723 8.41327 9.02300 9.31811 10.49820 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.028921 B = 0.002133 C = 0.002074 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 967.935555 B =13124.806624 C =13497.709654 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.093 4.093 2 C 0.190 3.810 3 C -0.334 4.334 4 C 0.470 3.530 5 N -0.694 5.694 6 C 0.516 3.484 7 O -0.584 6.584 8 C -0.138 4.138 9 C -0.076 4.076 10 C -0.054 4.054 11 C -0.110 4.110 12 C -0.121 4.121 13 C -0.123 4.123 14 C -0.123 4.123 15 C -0.106 4.106 16 N -0.467 5.467 17 H 0.445 0.555 18 N -0.338 5.338 19 C 0.253 3.747 20 C -0.555 4.555 21 H 0.070 0.930 22 C 0.070 3.930 23 N -0.886 5.886 24 Si 0.909 3.091 25 H -0.270 1.270 26 H -0.279 1.279 27 H -0.278 1.278 28 H 0.091 0.909 29 H 0.081 0.919 30 H 0.086 0.914 31 H 0.183 0.817 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.129 0.871 35 H 0.122 0.878 36 H 0.119 0.881 37 H 0.122 0.878 38 H 0.125 0.875 39 H 0.052 0.948 40 H 0.069 0.931 41 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.908 15.543 2.551 17.625 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.063 3.937 3 C -0.365 4.365 4 C 0.221 3.779 5 N -0.458 5.458 6 C 0.305 3.695 7 O -0.468 6.468 8 C -0.158 4.158 9 C -0.096 4.096 10 C -0.054 4.054 11 C -0.128 4.128 12 C -0.139 4.139 13 C -0.141 4.141 14 C -0.141 4.141 15 C -0.124 4.124 16 N -0.189 5.189 17 H 0.293 0.707 18 N -0.124 5.124 19 C 0.137 3.863 20 C -0.594 4.594 21 H 0.088 0.912 22 C -0.135 4.135 23 N -0.523 5.523 24 Si 0.735 3.265 25 H -0.194 1.194 26 H -0.205 1.205 27 H -0.204 1.204 28 H 0.109 0.891 29 H 0.099 0.901 30 H 0.105 0.895 31 H 0.200 0.800 32 H 0.143 0.857 33 H 0.149 0.851 34 H 0.147 0.853 35 H 0.140 0.860 36 H 0.137 0.863 37 H 0.140 0.860 38 H 0.143 0.857 39 H 0.069 0.931 40 H 0.086 0.914 41 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 8.086 14.914 2.609 17.165 hybrid contribution -0.177 -0.631 -0.948 1.153 sum 7.909 14.283 1.660 16.411 Atomic orbital electron populations 1.20604 0.86285 1.03916 1.04339 1.21359 0.94536 0.85581 0.92233 1.22270 0.91194 1.00309 1.22769 1.19155 0.91690 0.82134 0.84946 1.68946 1.28067 1.05105 1.43674 1.19036 0.87680 0.86218 0.76615 1.90627 1.27089 1.79269 1.49794 1.22906 0.99003 0.93285 1.00631 1.22204 0.97151 0.93254 0.96975 1.19140 0.93049 0.93296 0.99929 1.21505 0.91796 1.00370 0.99132 1.21095 0.98666 0.93678 1.00427 1.21231 0.97279 0.95154 1.00476 1.21071 0.92571 0.99730 1.00706 1.21368 0.99043 0.92604 0.99410 1.44560 0.98886 1.05200 1.70246 0.70725 1.47957 0.92748 1.08243 1.63498 1.20062 0.96518 0.70142 0.99614 1.21407 1.47589 0.98758 0.91600 0.91218 1.24949 0.94254 0.95791 0.98482 1.69903 1.44034 1.06931 1.31397 0.86252 0.78313 0.78875 0.83054 1.19385 1.20501 1.20360 0.89087 0.90056 0.89509 0.79971 0.85736 0.85084 0.85302 0.85966 0.86253 0.86038 0.85655 0.93054 0.91387 0.91874 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.30 10.09 36.00 0.36 -0.94 16 2 C 0.19 3.39 6.93 -81.69 -0.57 2.82 16 3 C -0.33 -6.47 9.41 -39.61 -0.37 -6.84 16 4 C 0.47 9.42 8.07 -155.27 -1.25 8.17 16 5 N -0.69 -14.14 10.53 -12.46 -0.13 -14.27 16 6 C 0.52 10.31 7.67 -13.10 -0.10 10.21 16 7 O -0.58 -12.64 13.17 4.93 0.06 -12.58 16 8 C -0.14 -2.21 9.52 -37.37 -0.36 -2.56 16 9 C -0.08 -1.08 9.46 -37.20 -0.35 -1.43 16 10 C -0.05 -0.66 5.87 -105.06 -0.62 -1.28 16 11 C -0.11 -1.24 9.41 -39.12 -0.37 -1.60 16 12 C -0.12 -1.15 10.03 -39.64 -0.40 -1.55 16 13 C -0.12 -1.09 10.04 -39.46 -0.40 -1.49 16 14 C -0.12 -1.12 10.03 -39.65 -0.40 -1.52 16 15 C -0.11 -1.13 9.80 -39.12 -0.38 -1.51 16 16 N -0.47 -8.59 7.38 31.33 0.23 -8.36 16 17 H 0.45 7.16 8.96 -182.55 -1.64 5.53 16 18 N -0.34 -6.45 3.63 -58.03 -0.21 -6.66 16 19 C 0.25 5.29 5.93 -5.20 -0.03 5.25 16 20 C -0.56 -13.11 9.39 -34.44 -0.32 -13.43 16 21 H 0.07 1.71 7.81 -52.49 -0.41 1.30 16 22 C 0.07 1.70 5.46 -17.82 -0.10 1.60 16 23 N -0.89 -22.25 13.29 55.43 0.74 -21.51 16 24 Si 0.91 19.11 29.54 -169.99 -5.02 14.09 16 25 H -0.27 -5.73 7.11 56.52 0.40 -5.33 16 26 H -0.28 -5.89 7.11 56.52 0.40 -5.49 16 27 H -0.28 -5.79 7.11 56.52 0.40 -5.38 16 28 H 0.09 1.23 8.14 -51.93 -0.42 0.80 16 29 H 0.08 1.11 7.14 -51.93 -0.37 0.74 16 30 H 0.09 0.99 8.14 -51.92 -0.42 0.57 16 31 H 0.18 3.66 5.77 -52.49 -0.30 3.35 16 32 H 0.12 1.77 6.07 -52.49 -0.32 1.45 16 33 H 0.13 1.91 7.52 -52.48 -0.39 1.52 16 34 H 0.13 1.34 6.17 -52.49 -0.32 1.02 16 35 H 0.12 0.90 8.06 -52.49 -0.42 0.47 16 36 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 37 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 38 H 0.13 1.13 8.06 -52.48 -0.42 0.71 16 39 H 0.05 1.11 8.14 -51.93 -0.42 0.69 16 40 H 0.07 1.42 7.18 -51.93 -0.37 1.05 16 41 H 0.27 6.48 8.31 -40.82 -0.34 6.14 16 LS Contribution 357.54 15.07 5.39 5.39 Total: -1.00 -29.30 357.54 -10.81 -40.11 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -6.22 Total: 9.89 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: -5.65 Total: -6.09 kcal Atomic # 7 Polarization: -51.44 SS G_CDS: 0.63 Total: -50.81 kcal Atomic # 8 Polarization: -12.64 SS G_CDS: 0.06 Total: -12.58 kcal Atomic # 14 Polarization: 19.11 SS G_CDS: -5.02 Total: 14.09 kcal Total LS contribution 5.39 Total: 5.39 kcal Total: -29.30 -10.81 -40.11 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000492265310.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 138.772 kcal (2) G-P(sol) polarization free energy of solvation -29.300 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 109.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.814 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.114 kcal (6) G-S(sol) free energy of system = (1) + (5) 98.658 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.64 seconds