Wall clock time and date at job start Tue Mar 31 2020 10:11:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99854 * 2 1 4 4 C 1.38465 * 120.00248 * 180.02562 * 2 1 3 5 5 C 1.39408 * 119.53438 * 4.99617 * 4 2 1 6 6 C 1.36851 * 119.37506 * 180.02562 * 5 4 2 7 7 C 1.40354 * 118.49636 * 0.27761 * 6 5 4 8 8 C 1.47518 * 120.47752 * 179.70441 * 7 6 5 9 9 O 1.21602 * 119.99493 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.39867 * 119.99677 * 174.88913 * 10 8 7 12 12 C 1.39312 * 119.95338 * 145.77964 * 11 10 8 13 13 C 1.38479 * 120.43249 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.32059 * 359.95257 * 13 12 11 15 15 C 1.40744 * 119.89355 * 0.02562 * 14 13 12 16 16 C 1.41409 * 120.21279 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99559 * 205.18391 * 16 15 14 18 18 C 1.39925 * 119.99720 * 25.18190 * 16 15 14 19 19 N 1.30821 * 120.00585 * 16.79841 * 18 16 15 20 20 Si 1.86807 * 119.99749 * 196.79260 * 18 16 15 21 21 H 1.48494 * 109.46899 * 94.96610 * 20 18 16 22 22 H 1.48497 * 109.47210 * 214.96476 * 20 18 16 23 23 H 1.48498 * 109.46998 * 334.96746 * 20 18 16 24 24 C 1.38264 * 119.94862 * 325.50037 * 11 10 8 25 25 C 1.39571 * 119.04362 * 359.43634 * 7 6 5 26 26 N 1.31673 * 120.51724 * 0.57379 * 25 7 6 27 27 H 1.08993 * 109.47383 * 269.99771 * 1 2 3 28 28 H 1.08992 * 109.47097 * 30.00292 * 1 2 3 29 29 H 1.09000 * 109.46983 * 150.00016 * 1 2 3 30 30 H 1.09003 * 109.47114 * 269.99594 * 3 2 1 31 31 H 1.08988 * 109.46984 * 30.00049 * 3 2 1 32 32 H 1.09004 * 109.46574 * 150.00254 * 3 2 1 33 33 H 1.07996 * 120.30623 * 0.02653 * 5 4 2 34 34 H 1.08009 * 120.74537 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00561 * 354.88720 * 10 8 7 36 36 H 1.08002 * 119.77864 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.83867 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.05665 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00427 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.16203 * 0.02562 * 24 11 10 41 41 H 1.08001 * 119.73894 * 180.29366 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1574 -1.1991 -0.0005 5 6 1.4546 -2.3984 -0.1067 6 6 2.1422 -3.5817 -0.1064 7 6 3.5405 -3.5436 0.0077 8 6 4.3246 -4.7931 0.0193 9 8 3.7597 -5.8661 -0.0708 10 7 5.6669 -4.7452 0.1298 11 6 6.4014 -5.9296 0.2485 12 6 7.6688 -6.0222 -0.3226 13 6 8.4048 -7.1899 -0.2107 14 6 7.8919 -8.2726 0.4677 15 6 6.6131 -8.1937 1.0503 16 6 6.0795 -9.3018 1.7481 17 1 5.0096 -9.4184 1.8391 18 6 6.9376 -10.2473 2.3206 19 7 8.2001 -9.9582 2.5045 20 14 6.2802 -11.9223 2.8224 21 1 6.5150 -12.8951 1.7254 22 1 6.9798 -12.3813 4.0492 23 1 4.8233 -11.8219 3.0916 24 6 5.8710 -7.0047 0.9373 25 6 4.1790 -2.3062 0.1043 26 7 3.4795 -1.1907 0.1001 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 0.3778 -2.3936 -0.1885 34 1 1.6201 -4.5237 -0.1879 35 1 6.1237 -3.8895 0.1270 36 1 8.0798 -5.1779 -0.8560 37 1 9.3861 -7.2513 -0.6575 38 1 8.4698 -9.1809 0.5527 39 1 8.7948 -10.6135 2.9017 40 1 4.8904 -6.9326 1.3839 41 1 5.2550 -2.2636 0.1878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001191064708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:42 Heat of formation + Delta-G solvation = 41.099295 kcal Electronic energy + Delta-G solvation = -24030.466663 eV Core-core repulsion = 20489.556329 eV Total energy + Delta-G solvation = -3540.910334 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -40.72596 -39.32038 -37.22724 -36.54600 -34.46767 -33.05966 -32.66364 -30.89398 -29.78077 -28.60788 -28.04996 -25.83924 -25.23905 -23.46626 -22.66024 -21.22440 -20.79007 -19.68494 -18.20552 -17.59920 -17.10288 -16.57940 -15.68983 -15.45668 -15.14949 -15.03463 -14.65714 -14.57637 -14.38529 -13.96193 -13.47576 -13.23425 -13.03840 -12.92640 -12.86632 -12.68408 -12.46883 -12.23108 -12.02396 -11.60864 -11.17793 -11.10580 -10.88022 -10.42620 -10.21755 -10.19148 -9.97116 -9.76563 -9.57608 -9.32829 -9.04017 -8.92206 -7.84622 -7.40851 -6.86741 -6.66993 -4.29540 0.83345 1.23944 2.57750 2.73908 2.90301 3.12410 3.17734 3.23995 3.38222 3.66523 4.00144 4.01869 4.19899 4.60810 4.69305 4.74512 4.84151 4.91321 4.96837 5.04644 5.14830 5.26815 5.30489 5.49852 5.56868 5.75659 5.81434 6.12489 6.28338 6.30909 6.43723 6.55655 6.80190 7.01050 7.07081 7.09728 7.12238 7.29885 7.61053 7.77289 7.85794 8.01352 8.13975 8.21838 8.31291 8.66920 8.78124 8.98516 9.03076 10.25876 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.002638 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.708095 B =10611.250957 C =11403.678515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.092 3.908 2 N -0.613 5.613 3 C 0.096 3.904 4 C 0.415 3.585 5 C -0.247 4.247 6 C 0.024 3.976 7 C -0.240 4.240 8 C 0.559 3.441 9 O -0.519 6.519 10 N -0.664 5.664 11 C 0.152 3.848 12 C -0.261 4.261 13 C -0.092 4.092 14 C -0.172 4.172 15 C 0.119 3.881 16 C -0.458 4.458 17 H 0.078 0.922 18 C 0.075 3.925 19 N -0.796 5.796 20 Si 0.908 3.092 21 H -0.269 1.269 22 H -0.278 1.278 23 H -0.262 1.262 24 C -0.208 4.208 25 C 0.185 3.815 26 N -0.546 5.546 27 H 0.055 0.945 28 H 0.072 0.928 29 H 0.074 0.926 30 H 0.049 0.951 31 H 0.063 0.937 32 H 0.082 0.918 33 H 0.138 0.862 34 H 0.146 0.854 35 H 0.396 0.604 36 H 0.089 0.911 37 H 0.091 0.909 38 H 0.119 0.881 39 H 0.279 0.721 40 H 0.106 0.894 41 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.013 18.535 -3.829 21.897 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 N -0.326 5.326 3 C -0.047 4.047 4 C 0.180 3.820 5 C -0.271 4.271 6 C -0.002 4.002 7 C -0.248 4.248 8 C 0.346 3.654 9 O -0.395 6.395 10 N -0.308 5.308 11 C 0.061 3.939 12 C -0.282 4.282 13 C -0.112 4.112 14 C -0.191 4.191 15 C 0.116 3.884 16 C -0.488 4.488 17 H 0.097 0.903 18 C -0.142 4.142 19 N -0.422 5.422 20 Si 0.733 3.267 21 H -0.194 1.194 22 H -0.204 1.204 23 H -0.186 1.186 24 C -0.230 4.230 25 C 0.026 3.974 26 N -0.263 5.263 27 H 0.073 0.927 28 H 0.091 0.909 29 H 0.093 0.907 30 H 0.067 0.933 31 H 0.082 0.918 32 H 0.101 0.899 33 H 0.155 0.845 34 H 0.164 0.836 35 H 0.231 0.769 36 H 0.107 0.893 37 H 0.110 0.890 38 H 0.137 0.863 39 H 0.090 0.910 40 H 0.124 0.876 41 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -10.933 18.676 -3.699 21.955 hybrid contribution -0.338 -0.970 0.215 1.049 sum -11.272 17.707 -3.485 21.277 Atomic orbital electron populations 1.21773 0.78277 1.03265 1.01842 1.46160 1.05342 1.03301 1.77780 1.21615 0.97861 0.83748 1.01446 1.18488 0.88610 0.85945 0.88925 1.21147 1.01277 0.91457 1.13255 1.21187 0.92504 0.98614 0.87857 1.20730 0.95242 0.94510 1.14342 1.17921 0.82045 0.88400 0.76990 1.90821 1.70198 1.30158 1.48299 1.43331 1.06168 1.08857 1.72458 1.17407 0.91800 0.85930 0.98780 1.20048 0.96636 0.99497 1.12013 1.20456 0.97614 0.93623 0.99460 1.21349 0.98155 0.98426 1.01210 1.17497 0.91164 0.90853 0.88880 1.19592 0.94554 1.04989 1.29625 0.90348 1.25895 0.94500 0.99951 0.93825 1.69825 1.05214 1.34783 1.32335 0.86296 0.80252 0.81721 0.78437 1.19370 1.20362 1.18561 1.20986 1.02022 0.93335 1.06628 1.22650 0.99399 0.86077 0.89273 1.67188 1.05918 1.31335 1.21895 0.92661 0.90881 0.90740 0.93290 0.91812 0.89927 0.84482 0.83600 0.76937 0.89252 0.89037 0.86317 0.90998 0.87599 0.82378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.50 10.27 59.85 0.61 1.12 16 2 N -0.61 -5.42 3.38 -189.70 -0.64 -6.06 16 3 C 0.10 0.70 10.49 59.85 0.63 1.33 16 4 C 0.42 4.80 7.36 -155.27 -1.14 3.66 16 5 C -0.25 -2.72 9.20 -39.65 -0.36 -3.09 16 6 C 0.02 0.32 9.65 -39.29 -0.38 -0.06 16 7 C -0.24 -3.55 5.89 -104.82 -0.62 -4.17 16 8 C 0.56 10.53 7.49 -12.48 -0.09 10.44 16 9 O -0.52 -11.91 14.16 5.28 0.07 -11.83 16 10 N -0.66 -12.28 5.28 -10.85 -0.06 -12.33 16 11 C 0.15 3.52 6.25 -83.78 -0.52 3.00 16 12 C -0.26 -5.82 9.97 -39.09 -0.39 -6.21 16 13 C -0.09 -2.19 10.02 -39.70 -0.40 -2.59 16 14 C -0.17 -4.57 8.69 -38.84 -0.34 -4.91 16 15 C 0.12 3.33 5.57 -106.85 -0.59 2.73 16 16 C -0.46 -12.74 9.05 -37.74 -0.34 -13.08 16 17 H 0.08 2.15 7.90 -52.48 -0.41 1.74 16 18 C 0.08 1.95 5.16 -17.35 -0.09 1.86 16 19 N -0.80 -20.97 10.94 55.55 0.61 -20.36 16 20 Si 0.91 19.34 29.59 -169.99 -5.03 14.31 16 21 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 22 H -0.28 -5.75 7.11 56.52 0.40 -5.35 16 23 H -0.26 -5.56 7.11 56.52 0.40 -5.16 16 24 C -0.21 -5.50 8.39 -38.68 -0.32 -5.83 16 25 C 0.19 2.36 10.71 -17.12 -0.18 2.18 16 26 N -0.55 -6.91 9.04 -12.14 -0.11 -7.02 16 27 H 0.05 0.27 8.14 -51.93 -0.42 -0.15 16 28 H 0.07 0.27 8.07 -51.93 -0.42 -0.15 16 29 H 0.07 0.37 5.95 -51.93 -0.31 0.06 16 30 H 0.05 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.32 8.07 -51.94 -0.42 -0.10 16 32 H 0.08 0.71 7.28 -51.93 -0.38 0.33 16 33 H 0.14 1.12 5.99 -52.49 -0.31 0.80 16 34 H 0.15 1.91 7.73 -52.48 -0.41 1.50 16 35 H 0.40 5.67 6.88 -40.82 -0.28 5.39 16 36 H 0.09 1.72 8.06 -52.49 -0.42 1.29 16 37 H 0.09 1.91 8.06 -52.49 -0.42 1.48 16 38 H 0.12 3.23 6.16 -52.49 -0.32 2.91 16 39 H 0.28 6.67 8.30 -40.82 -0.34 6.33 16 40 H 0.11 2.88 6.48 -52.49 -0.34 2.54 16 41 H 0.16 1.63 6.42 -52.49 -0.34 1.29 16 LS Contribution 345.48 15.07 5.21 5.21 Total: -1.00 -33.00 345.48 -9.25 -42.25 By element: Atomic # 1 Polarization: 14.21 SS G_CDS: -4.77 Total: 9.45 kcal Atomic # 6 Polarization: -9.07 SS G_CDS: -4.54 Total: -13.61 kcal Atomic # 7 Polarization: -45.58 SS G_CDS: -0.20 Total: -45.78 kcal Atomic # 8 Polarization: -11.91 SS G_CDS: 0.07 Total: -11.83 kcal Atomic # 14 Polarization: 19.34 SS G_CDS: -5.03 Total: 14.31 kcal Total LS contribution 5.21 Total: 5.21 kcal Total: -33.00 -9.25 -42.25 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191064708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 83.353 kcal (2) G-P(sol) polarization free energy of solvation -33.000 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 50.353 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.253 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.254 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds