Wall clock time and date at job start Tue Mar 31 2020 10:11:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.46503 * 119.99854 * 2 1 4 4 C 1.38465 * 120.00248 * 180.02562 * 2 1 3 5 5 C 1.39408 * 119.53438 * 4.99617 * 4 2 1 6 6 C 1.36851 * 119.37506 * 180.02562 * 5 4 2 7 7 C 1.40354 * 118.49636 * 0.27761 * 6 5 4 8 8 C 1.47518 * 120.47752 * 179.70441 * 7 6 5 9 9 O 1.21602 * 119.99493 * 0.02562 * 8 7 6 10 10 N 1.34770 * 119.99764 * 180.02562 * 8 7 6 11 11 C 1.39867 * 119.99677 * 174.88913 * 10 8 7 12 12 C 1.39312 * 119.95338 * 145.77964 * 11 10 8 13 13 C 1.38479 * 120.43249 * 179.97438 * 12 11 10 14 14 C 1.37681 * 120.32059 * 359.95257 * 13 12 11 15 15 C 1.40744 * 119.89355 * 0.02562 * 14 13 12 16 16 C 1.41409 * 120.21279 * 179.97438 * 15 14 13 17 17 H 1.08003 * 119.99559 * 205.18391 * 16 15 14 18 18 C 1.39925 * 119.99720 * 25.18190 * 16 15 14 19 19 N 1.30821 * 120.00585 * 16.79841 * 18 16 15 20 20 Si 1.86807 * 119.99749 * 196.79260 * 18 16 15 21 21 H 1.48494 * 109.46899 * 94.96610 * 20 18 16 22 22 H 1.48497 * 109.47210 * 214.96476 * 20 18 16 23 23 H 1.48498 * 109.46998 * 334.96746 * 20 18 16 24 24 C 1.38264 * 119.94862 * 325.50037 * 11 10 8 25 25 C 1.39571 * 119.04362 * 359.43634 * 7 6 5 26 26 N 1.31673 * 120.51724 * 0.57379 * 25 7 6 27 27 H 1.08993 * 109.47383 * 269.99771 * 1 2 3 28 28 H 1.08992 * 109.47097 * 30.00292 * 1 2 3 29 29 H 1.09000 * 109.46983 * 150.00016 * 1 2 3 30 30 H 1.09003 * 109.47114 * 269.99594 * 3 2 1 31 31 H 1.08988 * 109.46984 * 30.00049 * 3 2 1 32 32 H 1.09004 * 109.46574 * 150.00254 * 3 2 1 33 33 H 1.07996 * 120.30623 * 0.02653 * 5 4 2 34 34 H 1.08009 * 120.74537 * 180.02562 * 6 5 4 35 35 H 0.97001 * 120.00561 * 354.88720 * 10 8 7 36 36 H 1.08002 * 119.77864 * 359.97438 * 12 11 10 37 37 H 1.07998 * 119.83867 * 179.97438 * 13 12 11 38 38 H 1.07997 * 120.05665 * 180.02562 * 14 13 12 39 39 H 0.96996 * 120.00427 * 179.97438 * 19 18 16 40 40 H 1.07995 * 120.16203 * 0.02562 * 24 11 10 41 41 H 1.08001 * 119.73894 * 180.29366 * 25 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.1574 -1.1991 -0.0005 5 6 1.4546 -2.3984 -0.1067 6 6 2.1422 -3.5817 -0.1064 7 6 3.5405 -3.5436 0.0077 8 6 4.3246 -4.7931 0.0193 9 8 3.7597 -5.8661 -0.0708 10 7 5.6669 -4.7452 0.1298 11 6 6.4014 -5.9296 0.2485 12 6 7.6688 -6.0222 -0.3226 13 6 8.4048 -7.1899 -0.2107 14 6 7.8919 -8.2726 0.4677 15 6 6.6131 -8.1937 1.0503 16 6 6.0795 -9.3018 1.7481 17 1 5.0096 -9.4184 1.8391 18 6 6.9376 -10.2473 2.3206 19 7 8.2001 -9.9582 2.5045 20 14 6.2802 -11.9223 2.8224 21 1 6.5150 -12.8951 1.7254 22 1 6.9798 -12.3813 4.0492 23 1 4.8233 -11.8219 3.0916 24 6 5.8710 -7.0047 0.9373 25 6 4.1790 -2.3062 0.1043 26 7 3.4795 -1.1907 0.1001 27 1 -0.3634 0.0000 1.0276 28 1 -0.3633 0.8899 -0.5138 29 1 -0.3633 -0.8900 -0.5138 30 1 2.3792 1.5834 -1.0277 31 1 1.6084 2.0283 0.5138 32 1 3.1499 1.1383 0.5138 33 1 0.3778 -2.3936 -0.1885 34 1 1.6201 -4.5237 -0.1879 35 1 6.1237 -3.8895 0.1270 36 1 8.0798 -5.1779 -0.8560 37 1 9.3861 -7.2513 -0.6575 38 1 8.4698 -9.1809 0.5527 39 1 8.7948 -10.6135 2.9017 40 1 4.8904 -6.9326 1.3839 41 1 5.2550 -2.2636 0.1878 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001191064708.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:11:41 Heat of formation + Delta-G solvation = 21.167248 kcal Electronic energy + Delta-G solvation = -24031.330982 eV Core-core repulsion = 20489.556329 eV Total energy + Delta-G solvation = -3541.774653 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -41.83349 -40.72195 -38.94024 -37.44869 -36.24330 -34.87522 -33.64559 -31.99150 -31.74664 -29.73008 -29.12755 -27.27632 -26.74165 -24.41426 -23.90709 -22.83153 -22.41684 -21.22188 -19.69776 -18.98434 -18.16402 -17.78636 -17.24678 -16.68755 -16.48819 -16.39000 -16.11940 -15.95654 -15.53366 -15.11636 -14.88168 -14.68364 -14.30025 -14.17922 -13.99398 -13.68708 -13.49234 -13.35598 -13.04712 -13.02046 -12.91783 -12.78051 -12.74367 -12.17516 -11.99333 -11.53160 -11.23243 -11.15037 -10.96259 -10.86876 -10.78462 -10.43770 -9.39089 -8.81263 -8.64764 -8.53953 -6.36358 -0.22589 0.28454 0.93896 1.03685 1.36487 1.49759 1.50555 1.89001 1.96904 2.19360 2.23246 2.72757 2.91236 3.35194 3.71181 3.78284 3.86116 3.91565 4.09506 4.30213 4.44779 4.47959 4.51623 4.61087 4.65133 4.79394 4.85559 4.92798 4.98927 5.04166 5.10359 5.12653 5.13656 5.28358 5.34554 5.38208 5.76660 5.87214 5.88193 6.08586 6.11672 6.21218 6.34798 6.62849 6.69308 6.93972 6.94839 7.01514 7.29679 8.34115 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.025548 B = 0.002638 C = 0.002455 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1095.708095 B =10611.250957 C =11403.678515 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.082 3.918 2 N -0.608 5.608 3 C 0.091 3.909 4 C 0.412 3.588 5 C -0.240 4.240 6 C 0.015 3.985 7 C -0.265 4.265 8 C 0.559 3.441 9 O -0.570 6.570 10 N -0.654 5.654 11 C 0.159 3.841 12 C -0.250 4.250 13 C -0.090 4.090 14 C -0.198 4.198 15 C 0.089 3.911 16 C -0.502 4.502 17 H 0.062 0.938 18 C 0.037 3.963 19 N -0.822 5.822 20 Si 0.982 3.018 21 H -0.259 1.259 22 H -0.261 1.261 23 H -0.265 1.265 24 C -0.236 4.236 25 C 0.198 3.802 26 N -0.558 5.558 27 H 0.065 0.935 28 H 0.096 0.904 29 H 0.081 0.919 30 H 0.055 0.945 31 H 0.090 0.910 32 H 0.068 0.932 33 H 0.167 0.833 34 H 0.138 0.862 35 H 0.418 0.582 36 H 0.133 0.867 37 H 0.125 0.875 38 H 0.105 0.895 39 H 0.289 0.711 40 H 0.083 0.917 41 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.451 21.117 -4.403 24.422 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.319 5.319 3 C -0.051 4.051 4 C 0.175 3.825 5 C -0.264 4.264 6 C -0.011 4.011 7 C -0.274 4.274 8 C 0.350 3.650 9 O -0.450 6.450 10 N -0.300 5.300 11 C 0.066 3.934 12 C -0.271 4.271 13 C -0.109 4.109 14 C -0.218 4.218 15 C 0.086 3.914 16 C -0.532 4.532 17 H 0.080 0.920 18 C -0.177 4.177 19 N -0.448 5.448 20 Si 0.803 3.197 21 H -0.184 1.184 22 H -0.186 1.186 23 H -0.190 1.190 24 C -0.258 4.258 25 C 0.038 3.962 26 N -0.276 5.276 27 H 0.083 0.917 28 H 0.115 0.885 29 H 0.099 0.901 30 H 0.074 0.926 31 H 0.109 0.891 32 H 0.086 0.914 33 H 0.184 0.816 34 H 0.156 0.844 35 H 0.257 0.743 36 H 0.151 0.849 37 H 0.143 0.857 38 H 0.123 0.877 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -11.388 21.361 -4.281 24.582 hybrid contribution -0.299 -1.452 0.332 1.519 sum -11.686 19.909 -3.949 23.421 Atomic orbital electron populations 1.22067 0.76130 1.04843 1.02957 1.46570 1.06802 1.02863 1.75638 1.21755 0.97704 0.83575 1.02058 1.18854 0.88601 0.87217 0.87849 1.21352 1.02626 0.90313 1.12142 1.21245 0.92202 0.99380 0.88304 1.20407 0.95493 0.93183 1.18322 1.18558 0.81964 0.89190 0.75324 1.90794 1.71057 1.32465 1.50665 1.43202 1.06203 1.08447 1.72157 1.17499 0.92322 0.86526 0.97046 1.20493 0.95733 1.00264 1.10582 1.20842 0.98936 0.92990 0.98144 1.21319 0.97978 0.99322 1.03141 1.17839 0.92310 0.91563 0.89712 1.19735 0.94216 1.07108 1.32101 0.91986 1.26697 0.94614 1.03265 0.93168 1.69852 1.06192 1.36244 1.32476 0.85203 0.79259 0.76517 0.78750 1.18388 1.18559 1.18959 1.20943 1.01437 0.94701 1.08716 1.22889 1.00394 0.85208 0.87719 1.67301 1.06616 1.30846 1.22807 0.91688 0.88499 0.90080 0.92640 0.89143 0.91362 0.81555 0.84391 0.74300 0.84872 0.85733 0.87682 0.89987 0.89909 0.80255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.59 10.27 127.77 1.31 1.90 16 2 N -0.61 -8.83 3.38 -754.09 -2.55 -11.38 16 3 C 0.09 1.04 10.49 127.77 1.34 2.38 16 4 C 0.41 8.58 7.36 133.25 0.98 9.56 16 5 C -0.24 -4.87 9.20 22.23 0.20 -4.67 16 6 C 0.01 0.39 9.65 22.46 0.22 0.60 16 7 C -0.27 -7.85 5.89 -19.99 -0.12 -7.97 16 8 C 0.56 21.67 7.49 86.69 0.65 22.32 16 9 O -0.57 -27.77 14.16 -4.04 -0.06 -27.82 16 10 N -0.65 -24.03 5.28 -306.51 -1.62 -25.65 16 11 C 0.16 7.42 6.25 38.12 0.24 7.65 16 12 C -0.25 -10.73 9.97 22.59 0.23 -10.51 16 13 C -0.09 -4.20 10.02 22.20 0.22 -3.98 16 14 C -0.20 -10.86 8.69 22.75 0.20 -10.66 16 15 C 0.09 5.22 5.57 -21.31 -0.12 5.10 16 16 C -0.50 -29.75 9.05 23.46 0.21 -29.53 16 17 H 0.06 3.71 7.90 -2.91 -0.02 3.68 16 18 C 0.04 2.00 5.16 85.25 0.44 2.44 16 19 N -0.82 -44.52 10.94 21.82 0.24 -44.28 16 20 Si 0.98 40.78 29.59 68.60 2.03 42.81 16 21 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 22 H -0.26 -10.05 7.11 99.48 0.71 -9.35 16 23 H -0.27 -11.05 7.11 99.48 0.71 -10.35 16 24 C -0.24 -13.18 8.39 22.86 0.19 -12.99 16 25 C 0.20 4.77 10.71 85.04 0.91 5.68 16 26 N -0.56 -13.05 9.04 -192.31 -1.74 -14.78 16 27 H 0.06 0.40 8.14 -2.39 -0.02 0.38 16 28 H 0.10 0.29 8.07 -2.39 -0.02 0.27 16 29 H 0.08 0.51 5.95 -2.39 -0.01 0.49 16 30 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 31 H 0.09 0.57 8.07 -2.39 -0.02 0.55 16 32 H 0.07 1.01 7.28 -2.39 -0.02 0.99 16 33 H 0.17 2.26 5.99 -2.91 -0.02 2.25 16 34 H 0.14 3.79 7.73 -2.91 -0.02 3.77 16 35 H 0.42 11.25 6.88 -92.71 -0.64 10.61 16 36 H 0.13 4.55 8.06 -2.91 -0.02 4.53 16 37 H 0.12 4.89 8.06 -2.91 -0.02 4.87 16 38 H 0.11 5.95 6.16 -2.91 -0.02 5.93 16 39 H 0.29 14.01 8.30 -92.71 -0.77 13.24 16 40 H 0.08 4.89 6.48 -2.91 -0.02 4.87 16 41 H 0.18 3.30 6.42 -2.91 -0.02 3.28 16 Total: -1.00 -76.61 345.48 3.85 -72.76 By element: Atomic # 1 Polarization: 30.55 SS G_CDS: 0.44 Total: 30.99 kcal Atomic # 6 Polarization: -29.76 SS G_CDS: 7.11 Total: -22.65 kcal Atomic # 7 Polarization: -90.42 SS G_CDS: -5.66 Total: -96.09 kcal Atomic # 8 Polarization: -27.77 SS G_CDS: -0.06 Total: -27.82 kcal Atomic # 14 Polarization: 40.78 SS G_CDS: 2.03 Total: 42.81 kcal Total: -76.61 3.85 -72.76 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001191064708.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.926 kcal (2) G-P(sol) polarization free energy of solvation -76.613 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 17.313 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.759 kcal (6) G-S(sol) free energy of system = (1) + (5) 21.167 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds