Wall clock time and date at job start Tue Mar 31 2020 10:18:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46498 * 120.00349 * 2 1 4 4 C 1.50709 * 109.47079 * 269.72959 * 3 2 1 5 5 C 1.38386 * 120.00097 * 94.99635 * 4 3 2 6 6 N 1.32128 * 119.99834 * 179.97438 * 5 4 3 7 7 C 1.32151 * 119.99874 * 0.02562 * 6 5 4 8 8 C 1.38350 * 120.00056 * 359.97438 * 7 6 5 9 9 N 1.32118 * 119.99676 * 274.72247 * 4 3 2 10 10 C 1.34775 * 119.99511 * 179.73246 * 2 1 3 11 11 O 1.21286 * 120.00061 * 176.12714 * 10 2 1 12 12 C 1.50696 * 120.00534 * 356.11823 * 10 2 1 13 13 H 1.09007 * 109.46581 * 45.75267 * 12 10 2 14 14 C 1.50696 * 109.47158 * 285.75632 * 12 10 2 15 15 H 1.08002 * 120.00468 * 123.87117 * 14 12 10 16 16 C 1.37883 * 120.00127 * 303.86862 * 14 12 10 17 17 N 1.31510 * 119.99594 * 6.49819 * 16 14 12 18 18 Si 1.86797 * 119.99917 * 186.49910 * 16 14 12 19 19 H 1.48495 * 109.47470 * 0.02562 * 18 16 14 20 20 H 1.48505 * 109.47134 * 120.00118 * 18 16 14 21 21 H 1.48503 * 109.47092 * 239.99821 * 18 16 14 22 22 C 1.50699 * 109.47629 * 165.75332 * 12 10 2 23 23 C 1.38235 * 119.99656 * 296.36970 * 22 12 10 24 24 C 1.38237 * 119.99684 * 179.78810 * 23 22 12 25 25 C 1.38229 * 120.00208 * 0.43601 * 24 23 22 26 26 C 1.38241 * 119.99815 * 359.81452 * 25 24 23 27 27 C 1.38231 * 120.00217 * 116.63438 * 22 12 10 28 28 H 1.09002 * 109.47458 * 92.87953 * 1 2 3 29 29 H 1.08995 * 109.47074 * 212.88337 * 1 2 3 30 30 H 1.09002 * 109.46831 * 332.88263 * 1 2 3 31 31 H 1.09001 * 109.46894 * 29.72620 * 3 2 1 32 32 H 1.08989 * 109.47185 * 149.72704 * 3 2 1 33 33 H 1.08002 * 120.00255 * 359.95873 * 5 4 3 34 34 H 1.08002 * 120.00127 * 180.02562 * 7 6 5 35 35 H 1.08000 * 119.99810 * 179.97438 * 8 7 6 36 36 H 0.97002 * 120.00076 * 179.97438 * 17 16 14 37 37 H 1.08002 * 120.00174 * 359.97438 * 23 22 12 38 38 H 1.08001 * 119.99978 * 180.27062 * 24 23 22 39 39 H 1.08005 * 120.00431 * 179.83696 * 25 24 23 40 40 H 1.07998 * 119.99724 * 180.02562 * 26 25 24 41 41 H 1.08001 * 120.00082 * 359.97438 * 27 22 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4546 1.7003 -1.4209 5 6 1.5878 2.5808 -2.0441 6 7 1.8134 2.9597 -3.2896 7 6 2.8666 2.4973 -3.9404 8 6 3.7331 1.6170 -3.3173 9 7 3.5104 1.2423 -2.0696 10 6 2.1388 -1.1672 0.0055 11 8 3.3496 -1.1689 -0.0655 12 6 1.3879 -2.4704 0.0999 13 1 0.5434 -2.4538 -0.5892 14 6 0.8840 -2.6589 1.5075 15 1 -0.1693 -2.8155 1.6877 16 6 1.7678 -2.6317 2.5656 17 7 3.0278 -2.3150 2.3618 18 14 1.1752 -3.0447 4.2883 19 1 -0.2742 -3.3653 4.2497 20 1 1.9275 -4.2172 4.8027 21 1 1.4015 -1.8804 5.1819 22 6 2.3082 -3.6079 -0.2608 23 6 2.8369 -3.6916 -1.5353 24 6 3.6846 -4.7326 -1.8649 25 6 3.9965 -5.6947 -0.9228 26 6 3.4637 -5.6138 0.3503 27 6 2.6194 -4.5705 0.6811 28 1 -0.3634 -0.0516 -1.0264 29 1 -0.3633 -0.8630 0.5579 30 1 -0.3633 0.9147 0.4684 31 1 1.6064 2.0296 0.5096 32 1 3.1478 1.1395 0.5180 33 1 0.7267 2.9582 -1.5125 34 1 3.0513 2.8073 -4.9583 35 1 4.5936 1.2389 -3.8492 36 1 3.6495 -2.2955 3.1062 37 1 2.5900 -2.9420 -2.2727 38 1 4.1012 -4.7956 -2.8594 39 1 4.6567 -6.5095 -1.1810 40 1 3.7077 -6.3654 1.0865 41 1 2.2033 -4.5072 1.6758 RHF calculation, no. of doubly occupied orbitals= 57 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001465305607.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:18:42 Heat of formation + Delta-G solvation = 58.337000 kcal Electronic energy + Delta-G solvation = -26012.714122 eV Core-core repulsion = 22472.551271 eV Total energy + Delta-G solvation = -3540.162851 eV No. of doubly occupied orbitals = 57 Molecular weight (most abundant/longest-lived isotopes) = 311.137 amu Computer time = 0.68 seconds Orbital eigenvalues (eV) -40.91009 -38.99589 -37.59146 -34.81120 -33.92163 -33.67310 -31.82230 -30.84408 -29.65031 -28.03581 -26.83634 -25.48297 -24.35186 -23.83989 -22.50262 -21.25657 -20.36103 -18.32792 -17.44085 -16.86646 -16.83410 -16.00206 -15.75981 -15.38219 -15.14133 -14.63371 -14.34506 -14.11533 -13.81294 -13.69202 -13.15850 -12.63061 -12.45190 -12.32834 -12.19096 -12.07376 -11.79431 -11.60988 -11.44481 -11.23466 -11.22989 -10.96569 -10.95496 -10.72237 -10.29757 -10.06354 -9.72974 -9.38359 -9.22960 -8.90887 -8.60148 -8.16351 -7.78687 -7.69481 -7.38692 -6.11861 -4.28776 0.87578 1.30719 2.48687 2.58936 3.18073 3.29185 3.30410 3.71420 4.12675 4.18777 4.25511 4.35877 4.46281 4.65239 4.95165 4.98502 5.10301 5.26579 5.43377 5.53060 5.69549 5.79458 5.82051 5.91155 6.01377 6.05567 6.17264 6.32281 6.46924 6.49913 6.55324 6.60352 6.77481 6.83917 7.08557 7.20909 7.41729 7.46970 7.49431 7.61543 7.70487 7.80588 7.99206 8.13932 8.25656 8.48992 8.77295 9.34553 9.79026 10.85574 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013712 B = 0.005507 C = 0.004294 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2041.522486 B = 5083.301295 C = 6519.534867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.083 3.917 2 N -0.623 5.623 3 C 0.171 3.829 4 C 0.078 3.922 5 C 0.051 3.949 6 N -0.443 5.443 7 C 0.033 3.967 8 C 0.050 3.950 9 N -0.405 5.405 10 C 0.545 3.455 11 O -0.502 6.502 12 C 0.061 3.939 13 H 0.049 0.951 14 C -0.537 4.537 15 H 0.068 0.932 16 C 0.071 3.929 17 N -0.832 5.832 18 Si 0.882 3.118 19 H -0.270 1.270 20 H -0.280 1.280 21 H -0.283 1.283 22 C -0.015 4.015 23 C -0.119 4.119 24 C -0.140 4.140 25 C -0.144 4.144 26 C -0.147 4.147 27 C -0.058 4.058 28 H 0.032 0.968 29 H 0.095 0.905 30 H 0.054 0.946 31 H 0.083 0.917 32 H 0.098 0.902 33 H 0.165 0.835 34 H 0.164 0.836 35 H 0.165 0.835 36 H 0.265 0.735 37 H 0.097 0.903 38 H 0.101 0.899 39 H 0.101 0.899 40 H 0.102 0.898 41 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.935 5.693 -7.289 9.703 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 N -0.360 5.360 3 C 0.046 3.954 4 C -0.064 4.064 5 C -0.110 4.110 6 N -0.158 5.158 7 C -0.127 4.127 8 C -0.111 4.111 9 N -0.120 5.120 10 C 0.335 3.665 11 O -0.373 6.373 12 C 0.040 3.960 13 H 0.067 0.933 14 C -0.575 4.575 15 H 0.086 0.914 16 C -0.137 4.137 17 N -0.464 5.464 18 Si 0.708 3.292 19 H -0.194 1.194 20 H -0.206 1.206 21 H -0.209 1.209 22 C -0.016 4.016 23 C -0.138 4.138 24 C -0.159 4.159 25 C -0.162 4.162 26 C -0.165 4.165 27 C -0.076 4.076 28 H 0.050 0.950 29 H 0.113 0.887 30 H 0.072 0.928 31 H 0.102 0.898 32 H 0.117 0.883 33 H 0.182 0.818 34 H 0.181 0.819 35 H 0.182 0.818 36 H 0.075 0.925 37 H 0.115 0.885 38 H 0.119 0.881 39 H 0.119 0.881 40 H 0.120 0.880 41 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.037 5.686 -7.212 9.407 hybrid contribution -0.102 -0.038 0.909 0.915 sum -2.139 5.648 -6.303 8.730 Atomic orbital electron populations 1.21777 0.80587 1.03619 1.00047 1.47810 1.06020 1.04524 1.77609 1.20016 0.99780 0.87205 0.88446 1.23112 0.90836 0.92944 0.99547 1.23581 0.99633 0.96033 0.91733 1.68393 1.17736 1.21716 1.07964 1.23677 0.91842 0.96066 1.01110 1.23870 0.99933 0.95119 0.92135 1.68543 1.17495 1.18677 1.07311 1.21088 0.88013 0.84393 0.73048 1.90597 1.14151 1.86351 1.46224 1.17914 0.92580 0.87558 0.97955 0.93314 1.20671 0.94373 1.53598 0.88845 0.91355 1.25089 0.95067 0.94601 0.98962 1.70219 1.02536 1.42243 1.31432 0.86695 0.79288 0.78391 0.84797 1.19412 1.20626 1.20935 1.19859 0.95407 0.94910 0.91401 1.20847 0.98664 0.97379 0.96892 1.20751 1.00306 0.96299 0.98499 1.20784 1.01651 0.99298 0.94437 1.21077 1.00070 0.99425 0.95955 1.21415 0.94571 0.91531 1.00040 0.94980 0.88684 0.92757 0.89843 0.88349 0.81801 0.81863 0.81808 0.92492 0.88469 0.88063 0.88092 0.87963 0.84602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.32 9.97 59.85 0.60 1.91 16 2 N -0.62 -12.12 2.86 -182.96 -0.52 -12.64 16 3 C 0.17 2.93 5.75 -5.19 -0.03 2.90 16 4 C 0.08 1.27 6.37 -82.41 -0.52 0.74 16 5 C 0.05 0.70 10.86 -17.37 -0.19 0.51 16 6 N -0.44 -6.14 10.50 -13.06 -0.14 -6.28 16 7 C 0.03 0.40 11.22 -17.37 -0.20 0.21 16 8 C 0.05 0.69 11.22 -17.37 -0.19 0.49 16 9 N -0.41 -7.21 10.42 -9.28 -0.10 -7.30 16 10 C 0.54 12.84 5.49 -10.99 -0.06 12.78 16 11 O -0.50 -13.58 14.28 5.55 0.08 -13.50 16 12 C 0.06 1.44 1.85 -94.08 -0.17 1.26 16 13 H 0.05 1.06 7.42 -51.92 -0.39 0.68 16 14 C -0.54 -12.91 6.26 -34.44 -0.22 -13.13 16 15 H 0.07 1.59 7.77 -52.49 -0.41 1.18 16 16 C 0.07 1.76 3.15 -17.82 -0.06 1.70 16 17 N -0.83 -22.38 9.87 55.43 0.55 -21.83 16 18 Si 0.88 19.39 29.51 -169.99 -5.02 14.37 16 19 H -0.27 -5.80 7.11 56.52 0.40 -5.40 16 20 H -0.28 -6.24 7.11 56.52 0.40 -5.84 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 C -0.01 -0.36 4.39 -104.63 -0.46 -0.82 16 23 C -0.12 -2.67 9.01 -39.58 -0.36 -3.03 16 24 C -0.14 -2.85 10.05 -39.59 -0.40 -3.24 16 25 C -0.14 -2.84 10.05 -39.58 -0.40 -3.24 16 26 C -0.15 -3.13 10.05 -39.58 -0.40 -3.53 16 27 C -0.06 -1.38 7.95 -39.59 -0.31 -1.69 16 28 H 0.03 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.09 1.65 5.51 -51.93 -0.29 1.37 16 30 H 0.05 0.69 7.86 -51.93 -0.41 0.28 16 31 H 0.08 1.11 7.78 -51.93 -0.40 0.70 16 32 H 0.10 1.99 7.48 -51.93 -0.39 1.60 16 33 H 0.16 1.76 8.06 -52.49 -0.42 1.33 16 34 H 0.16 1.37 8.06 -52.49 -0.42 0.95 16 35 H 0.16 1.78 8.06 -52.49 -0.42 1.36 16 36 H 0.26 7.02 8.31 -40.82 -0.34 6.69 16 37 H 0.10 2.10 8.06 -52.49 -0.42 1.68 16 38 H 0.10 1.76 8.06 -52.49 -0.42 1.33 16 39 H 0.10 1.68 8.06 -52.48 -0.42 1.26 16 40 H 0.10 1.93 8.06 -52.49 -0.42 1.50 16 41 H 0.14 3.40 4.94 -52.49 -0.26 3.14 16 LS Contribution 344.03 15.07 5.18 5.18 Total: -1.00 -31.86 344.03 -8.39 -40.24 By element: Atomic # 1 Polarization: 12.97 SS G_CDS: -5.06 Total: 7.92 kcal Atomic # 6 Polarization: -2.80 SS G_CDS: -3.37 Total: -6.17 kcal Atomic # 7 Polarization: -47.84 SS G_CDS: -0.21 Total: -48.05 kcal Atomic # 8 Polarization: -13.58 SS G_CDS: 0.08 Total: -13.50 kcal Atomic # 14 Polarization: 19.39 SS G_CDS: -5.02 Total: 14.37 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.86 -8.39 -40.24 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001465305607.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.581 kcal (2) G-P(sol) polarization free energy of solvation -31.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 66.722 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.385 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.337 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.68 seconds