Wall clock time and date at job start Tue Mar 31 2020 10:37:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52998 * 109.47109 * 2 1 4 4 H 1.09002 * 109.46772 * 55.00424 * 3 2 1 5 5 N 1.46497 * 109.47278 * 295.00593 * 3 2 1 6 6 C 1.34783 * 119.99962 * 155.00088 * 5 3 2 7 7 O 1.21274 * 120.00131 * 359.97438 * 6 5 3 8 8 C 1.50697 * 119.99745 * 179.97438 * 6 5 3 9 9 C 1.53000 * 109.47168 * 179.97438 * 8 6 5 10 10 H 1.09006 * 109.46765 * 54.99528 * 9 8 6 11 11 C 1.50703 * 109.47163 * 295.00252 * 9 8 6 12 12 H 1.07999 * 119.99457 * 325.85160 * 11 9 8 13 13 C 1.37874 * 120.00164 * 145.84920 * 11 9 8 14 14 N 1.31515 * 119.99860 * 6.11519 * 13 11 9 15 15 Si 1.86799 * 120.00186 * 186.11633 * 13 11 9 16 16 H 1.48505 * 109.47202 * 89.99789 * 15 13 11 17 17 H 1.48498 * 109.47224 * 210.00192 * 15 13 11 18 18 H 1.48506 * 109.46877 * 330.00190 * 15 13 11 19 19 C 1.50694 * 109.47615 * 174.99701 * 9 8 6 20 20 C 1.38244 * 119.99629 * 63.45971 * 19 9 8 21 21 C 1.38233 * 119.99702 * 179.79042 * 20 19 9 22 22 C 1.38233 * 120.00109 * 0.44136 * 21 20 19 23 23 C 1.38237 * 120.00262 * 359.81188 * 22 21 20 24 24 C 1.38232 * 120.00423 * 243.73787 * 19 9 8 25 25 C 1.52997 * 109.47322 * 175.00183 * 3 2 1 26 26 F 1.39902 * 109.47172 * 300.00310 * 25 3 2 27 27 F 1.39903 * 109.47343 * 60.00197 * 25 3 2 28 28 H 1.09003 * 109.47144 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.47215 * 299.99331 * 1 2 3 30 30 H 1.08999 * 109.47553 * 59.99490 * 1 2 3 31 31 H 1.09002 * 109.46959 * 240.00182 * 2 1 3 32 32 H 1.08999 * 109.47553 * 120.00510 * 2 1 3 33 33 H 0.96996 * 119.99907 * 334.99263 * 5 3 2 34 34 H 1.09002 * 109.47413 * 300.00123 * 8 6 5 35 35 H 1.09002 * 109.47365 * 59.99834 * 8 6 5 36 36 H 0.97006 * 120.00026 * 179.97438 * 14 13 11 37 37 H 1.07997 * 119.99988 * 359.97438 * 20 19 9 38 38 H 1.08000 * 119.99686 * 180.26976 * 21 20 19 39 39 H 1.07997 * 119.99836 * 179.83607 * 22 21 20 40 40 H 1.07992 * 120.00111 * 180.02562 * 23 22 21 41 41 H 1.07998 * 120.00089 * 359.97132 * 24 19 9 42 42 H 1.08994 * 109.47748 * 180.02562 * 25 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 1.6054 1.9814 0.8419 5 7 1.6523 2.0975 -1.2517 6 6 1.5255 3.4385 -1.2994 7 8 1.7319 4.1028 -0.3060 8 6 1.1273 4.1123 -2.5872 9 6 1.0552 5.6252 -2.3701 10 1 2.0046 5.9803 -1.9692 11 6 -0.0507 5.9409 -1.3963 12 1 -0.9484 5.3405 -1.3857 13 6 0.0834 6.9960 -0.5191 14 7 1.1202 7.7999 -0.6112 15 14 -1.2072 7.2837 0.8003 16 1 -0.8338 6.5380 2.0291 17 1 -1.2870 8.7345 1.1067 18 1 -2.5270 6.8071 0.3139 19 6 0.7778 6.3086 -3.6842 20 6 -0.4102 6.0705 -4.3498 21 6 -0.6665 6.7008 -5.5531 22 6 0.2689 7.5620 -6.0953 23 6 1.4591 7.7961 -5.4323 24 6 1.7137 7.1692 -4.2269 25 6 3.5648 1.4444 0.1257 26 9 3.9349 0.8188 1.3210 27 9 4.1226 0.7526 -0.9548 28 1 -0.3633 -1.0277 0.0005 29 1 -0.3634 0.5137 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5139 0.8899 33 1 1.4870 1.5662 -2.0462 34 1 1.8661 3.8902 -3.3571 35 1 0.1512 3.7441 -2.9032 36 1 1.2144 8.5425 0.0058 37 1 -1.1392 5.3944 -3.9283 38 1 -1.5965 6.5181 -6.0710 39 1 0.0697 8.0524 -7.0367 40 1 2.1897 8.4693 -5.8557 41 1 2.6435 7.3521 -3.7089 42 1 3.9281 2.4720 0.1261 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000452264310.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:37:58 Heat of formation + Delta-G solvation = -133.095513 kcal Electronic energy + Delta-G solvation = -26157.594191 eV Core-core repulsion = 22158.441017 eV Total energy + Delta-G solvation = -3999.153174 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 311.144 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -48.90466 -46.88192 -39.37484 -38.28021 -36.00287 -33.98128 -32.18076 -31.41963 -30.02105 -29.31789 -28.18808 -25.53313 -23.96160 -22.86667 -21.67007 -21.07162 -20.29236 -19.31731 -17.34410 -17.30042 -16.74096 -16.64683 -16.31989 -15.73386 -15.49346 -14.52346 -14.36392 -14.10623 -14.04012 -13.76413 -13.66250 -13.37520 -13.26673 -12.91482 -12.66655 -12.51181 -12.34389 -12.29126 -11.98502 -11.85028 -11.64951 -11.39189 -11.08555 -10.90727 -10.81051 -10.73675 -10.59185 -10.27525 -10.08684 -9.48804 -9.17368 -8.97811 -8.82527 -8.36861 -8.05563 -7.62501 -5.96491 -3.96374 2.27738 2.33237 3.26940 3.35905 3.38450 3.42054 3.43450 3.96477 4.32588 4.39523 4.49310 4.73575 4.87844 5.00208 5.08667 5.28823 5.36620 5.50979 5.57803 5.65375 5.71528 5.73298 5.81253 5.83121 5.98230 6.05042 6.13325 6.15219 6.26356 6.40099 6.51203 6.66142 6.77150 6.88994 7.02763 7.30095 7.41926 7.50126 7.82345 7.89731 7.93239 8.03310 8.34858 8.89343 9.03758 9.66010 11.13540 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.012237 B = 0.004494 C = 0.003851 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2287.591193 B = 6229.431416 C = 7269.494022 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.133 4.133 3 C 0.104 3.896 4 H 0.115 0.885 5 N -0.738 5.738 6 C 0.513 3.487 7 O -0.491 6.491 8 C -0.122 4.122 9 C 0.080 3.920 10 H 0.072 0.928 11 C -0.494 4.494 12 H 0.051 0.949 13 C 0.079 3.921 14 N -0.880 5.880 15 Si 0.886 3.114 16 H -0.280 1.280 17 H -0.289 1.289 18 H -0.276 1.276 19 C -0.021 4.021 20 C -0.115 4.115 21 C -0.132 4.132 22 C -0.155 4.155 23 C -0.128 4.128 24 C -0.118 4.118 25 C 0.246 3.754 26 F -0.206 7.206 27 F -0.206 7.206 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.073 0.927 32 H 0.081 0.919 33 H 0.399 0.601 34 H 0.068 0.932 35 H 0.079 0.921 36 H 0.259 0.741 37 H 0.113 0.887 38 H 0.105 0.895 39 H 0.104 0.896 40 H 0.105 0.895 41 H 0.113 0.887 42 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.327 -12.623 -4.377 13.426 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.171 4.171 3 C -0.003 4.003 4 H 0.133 0.867 5 N -0.395 5.395 6 C 0.301 3.699 7 O -0.362 6.362 8 C -0.162 4.162 9 C 0.061 3.939 10 H 0.090 0.910 11 C -0.531 4.531 12 H 0.069 0.931 13 C -0.124 4.124 14 N -0.517 5.517 15 Si 0.714 3.286 16 H -0.207 1.207 17 H -0.215 1.215 18 H -0.201 1.201 19 C -0.022 4.022 20 C -0.133 4.133 21 C -0.150 4.150 22 C -0.174 4.174 23 C -0.146 4.146 24 C -0.137 4.137 25 C 0.190 3.810 26 F -0.187 7.187 27 F -0.187 7.187 28 H 0.075 0.925 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.092 0.908 32 H 0.099 0.901 33 H 0.234 0.766 34 H 0.086 0.914 35 H 0.097 0.903 36 H 0.069 0.931 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.122 0.878 40 H 0.124 0.876 41 H 0.131 0.869 42 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges 1.574 -11.938 -3.537 12.550 hybrid contribution -0.746 0.034 0.435 0.864 sum 0.828 -11.904 -3.102 12.329 Atomic orbital electron populations 1.21720 0.94332 1.01690 1.02860 1.21777 0.97488 0.94172 1.03626 1.21817 0.90886 0.95856 0.91729 0.86691 1.46194 1.73424 1.07981 1.11852 1.21102 0.76306 0.80534 0.91995 1.90776 1.46211 1.63130 1.36073 1.21811 1.01103 1.00303 0.92999 1.17838 1.00908 0.86177 0.88989 0.90990 1.20677 1.01944 1.14036 1.16446 0.93124 1.24805 0.95177 0.95688 0.96772 1.69911 1.28936 1.15894 1.36985 0.86706 0.81941 0.77052 0.82877 1.20660 1.21497 1.20135 1.20713 0.92150 0.94881 0.94449 1.20940 0.97375 1.00623 0.94393 1.20973 0.98565 0.98555 0.96886 1.20798 0.95313 1.01113 1.00134 1.20985 0.97133 1.00232 0.96252 1.21084 0.99829 0.97912 0.94841 1.22576 0.94661 0.92941 0.70780 1.92946 1.92902 1.85357 1.47508 1.92939 1.87282 1.82414 1.56111 0.92469 0.92320 0.92039 0.90809 0.90072 0.76620 0.91382 0.90281 0.93109 0.86928 0.87682 0.87812 0.87645 0.86856 0.86829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.43 9.80 37.16 0.36 -1.07 16 2 C -0.13 -1.33 5.23 -26.73 -0.14 -1.47 16 3 C 0.10 1.33 2.19 -67.93 -0.15 1.18 16 4 H 0.12 1.68 7.58 -51.93 -0.39 1.28 16 5 N -0.74 -9.92 4.45 -53.81 -0.24 -10.16 16 6 C 0.51 9.34 7.54 -10.98 -0.08 9.26 16 7 O -0.49 -11.30 14.65 5.56 0.08 -11.22 16 8 C -0.12 -2.20 4.95 -27.88 -0.14 -2.34 16 9 C 0.08 1.83 1.67 -92.92 -0.16 1.68 16 10 H 0.07 1.90 6.98 -51.93 -0.36 1.54 16 11 C -0.49 -12.83 6.37 -34.44 -0.22 -13.05 16 12 H 0.05 1.31 7.82 -52.49 -0.41 0.90 16 13 C 0.08 2.18 5.45 -17.82 -0.10 2.08 16 14 N -0.88 -25.37 12.87 55.43 0.71 -24.66 16 15 Si 0.89 21.86 29.54 -169.99 -5.02 16.84 16 16 H -0.28 -7.01 7.11 56.52 0.40 -6.61 16 17 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 18 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 19 C -0.02 -0.46 4.77 -104.62 -0.50 -0.96 16 20 C -0.12 -2.26 8.86 -39.58 -0.35 -2.61 16 21 C -0.13 -2.31 10.05 -39.59 -0.40 -2.71 16 22 C -0.16 -2.66 10.05 -39.58 -0.40 -3.06 16 23 C -0.13 -2.32 10.05 -39.58 -0.40 -2.72 16 24 C -0.12 -2.45 9.67 -39.58 -0.38 -2.83 16 25 C 0.25 3.25 5.07 37.16 0.19 3.44 16 26 F -0.21 -2.79 16.73 2.25 0.04 -2.75 16 27 F -0.21 -2.75 16.83 2.25 0.04 -2.72 16 28 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 29 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 30 H 0.06 0.61 7.75 -51.93 -0.40 0.21 16 31 H 0.07 0.68 7.94 -51.93 -0.41 0.27 16 32 H 0.08 0.78 7.66 -51.93 -0.40 0.39 16 33 H 0.40 4.27 8.60 -40.82 -0.35 3.92 16 34 H 0.07 1.07 8.14 -51.93 -0.42 0.65 16 35 H 0.08 1.31 7.77 -51.93 -0.40 0.91 16 36 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 37 H 0.11 2.12 7.76 -52.49 -0.41 1.72 16 38 H 0.11 1.55 8.06 -52.49 -0.42 1.13 16 39 H 0.10 1.48 8.06 -52.49 -0.42 1.06 16 40 H 0.11 1.64 8.06 -52.49 -0.42 1.22 16 41 H 0.11 2.37 7.95 -52.49 -0.42 1.95 16 42 H 0.11 1.59 8.14 -51.93 -0.42 1.17 16 LS Contribution 360.97 15.07 5.44 5.44 Total: -1.00 -30.69 360.97 -7.86 -38.55 By element: Atomic # 1 Polarization: 11.91 SS G_CDS: -6.05 Total: 5.86 kcal Atomic # 6 Polarization: -12.32 SS G_CDS: -2.85 Total: -15.17 kcal Atomic # 7 Polarization: -35.29 SS G_CDS: 0.47 Total: -34.82 kcal Atomic # 8 Polarization: -11.30 SS G_CDS: 0.08 Total: -11.22 kcal Atomic # 9 Polarization: -5.54 SS G_CDS: 0.08 Total: -5.47 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Total LS contribution 5.44 Total: 5.44 kcal Total: -30.69 -7.86 -38.55 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000452264310.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -94.549 kcal (2) G-P(sol) polarization free energy of solvation -30.687 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.859 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.546 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds