Wall clock time and date at job start Tue Mar 31 2020 10:00:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.29023 * 124.91704 * 2 1 4 4 C 1.31785 * 117.12596 * 179.97438 * 3 2 1 5 5 C 1.50701 * 122.75067 * 179.97438 * 4 3 2 6 6 C 1.53004 * 109.46978 * 305.02900 * 5 4 3 7 7 C 1.50701 * 109.46978 * 180.02562 * 6 5 4 8 8 O 1.21284 * 119.99909 * 359.97438 * 7 6 5 9 9 N 1.34777 * 119.99916 * 180.27443 * 7 6 5 10 10 C 1.46506 * 120.00042 * 179.72364 * 9 7 6 11 11 H 1.09001 * 109.47207 * 325.00042 * 10 9 7 12 12 C 1.53006 * 109.46844 * 84.99586 * 10 9 7 13 13 C 1.52992 * 109.47261 * 204.99620 * 10 9 7 14 14 N 1.46503 * 109.47002 * 54.99797 * 13 10 9 15 15 C 1.46503 * 120.00295 * 270.00165 * 14 13 10 16 16 C 1.36940 * 119.99675 * 90.00219 * 14 13 10 17 17 H 1.07996 * 120.00429 * 20.37628 * 16 14 13 18 18 C 1.38814 * 119.99871 * 200.38220 * 16 14 13 19 19 N 1.31626 * 119.99961 * 15.00354 * 18 16 14 20 20 Si 1.86798 * 120.00239 * 195.00293 * 18 16 14 21 21 H 1.48503 * 109.47077 * 84.99950 * 20 18 16 22 22 H 1.48500 * 109.47253 * 205.00114 * 20 18 16 23 23 H 1.48500 * 109.46886 * 325.00157 * 20 18 16 24 24 C 1.33632 * 114.49909 * 0.23196 * 4 3 2 25 25 S 1.70979 * 124.91485 * 179.97438 * 2 1 3 26 26 H 1.08997 * 109.47066 * 90.00405 * 1 2 3 27 27 H 1.08999 * 109.47296 * 210.00358 * 1 2 3 28 28 H 1.08998 * 109.47680 * 330.00470 * 1 2 3 29 29 H 1.09000 * 109.47299 * 185.02652 * 5 4 3 30 30 H 1.09005 * 109.46820 * 65.01965 * 5 4 3 31 31 H 1.09000 * 109.47308 * 59.99758 * 6 5 4 32 32 H 1.09008 * 109.46810 * 299.99693 * 6 5 4 33 33 H 0.96998 * 120.00339 * 359.72072 * 9 7 6 34 34 H 1.09000 * 109.46723 * 180.02562 * 12 10 9 35 35 H 1.08991 * 109.47165 * 300.00080 * 12 10 9 36 36 H 1.09001 * 109.46846 * 60.00235 * 12 10 9 37 37 H 1.09002 * 109.47452 * 175.00009 * 13 10 9 38 38 H 1.09001 * 109.47279 * 295.00177 * 13 10 9 39 39 H 1.08995 * 109.46954 * 95.12667 * 15 14 13 40 40 H 1.08999 * 109.46916 * 215.12661 * 15 14 13 41 41 H 1.09001 * 109.46844 * 335.12775 * 15 14 13 42 42 H 0.97001 * 119.99757 * 180.02562 * 19 18 16 43 43 H 1.08000 * 126.03628 * 179.76514 * 24 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2455 1.0580 0.0000 4 6 3.5512 0.8793 0.0005 5 6 4.5307 2.0245 0.0000 6 6 4.2333 2.9495 -1.1820 7 6 5.2133 4.0944 -1.1828 8 8 6.0653 4.1639 -0.3225 9 7 5.1391 5.0442 -2.1361 10 6 6.0879 6.1604 -2.1335 11 1 6.3239 6.4343 -1.1052 12 6 7.3697 5.7419 -2.8567 13 6 5.4660 7.3601 -2.8509 14 7 4.1789 7.6860 -2.2317 15 6 2.9490 7.0633 -2.7274 16 6 4.1256 8.5727 -1.1894 17 1 4.9349 9.2701 -1.0318 18 6 3.0312 8.5750 -0.3355 19 7 2.1960 7.5576 -0.3333 20 14 2.7437 10.0218 0.8105 21 1 2.0020 11.0861 0.0877 22 1 1.9500 9.5744 1.9832 23 1 4.0506 10.5552 1.2718 24 6 3.9354 -0.4006 -0.0039 25 16 2.4856 -1.4020 0.0006 26 1 -0.3633 -0.0001 -1.0276 27 1 -0.3634 -0.8899 0.5139 28 1 -0.3634 0.8900 0.5137 29 1 5.5449 1.6352 -0.0894 30 1 4.4368 2.5834 0.9312 31 1 3.2192 3.3388 -1.0925 32 1 4.3272 2.3906 -2.1132 33 1 4.4575 4.9887 -2.8240 34 1 8.0758 6.5723 -2.8543 35 1 7.8127 4.8873 -2.3456 36 1 7.1337 5.4681 -3.8850 37 1 6.1347 8.2174 -2.7719 38 1 5.3119 7.1152 -3.9018 39 1 2.7187 6.1843 -2.1255 40 1 2.1274 7.7764 -2.6583 41 1 3.0857 6.7661 -3.7671 42 1 1.4310 7.5594 0.2632 43 1 4.9545 -0.7580 -0.0079 RHF calculation, no. of doubly occupied orbitals= 56 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754326015.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 10:00:37 Heat of formation + Delta-G solvation = 17.888821 kcal Electronic energy + Delta-G solvation = -23720.316615 eV Core-core repulsion = 20313.843750 eV Total energy + Delta-G solvation = -3406.472865 eV No. of doubly occupied orbitals = 56 Molecular weight (most abundant/longest-lived isotopes) = 311.141 amu Computer time = 0.60 seconds Orbital eigenvalues (eV) -40.07002 -39.07316 -36.35509 -34.05770 -33.68863 -31.58317 -30.92634 -29.97797 -28.34088 -26.14317 -25.61641 -25.14251 -22.60322 -21.61992 -20.18466 -19.74356 -19.63452 -17.53743 -16.74754 -16.60124 -15.57264 -15.27033 -15.04712 -14.90941 -14.64913 -13.86507 -13.81630 -13.53078 -13.35462 -13.06547 -12.91837 -12.83631 -12.56506 -12.31927 -12.09144 -11.83330 -11.66728 -11.47913 -11.37654 -11.01947 -10.85629 -10.76931 -10.73773 -10.49637 -10.16668 -9.93125 -9.79333 -9.65977 -9.49363 -9.19830 -8.72636 -8.54432 -8.26664 -6.73762 -5.68461 -3.11414 0.62859 1.26566 1.62811 2.74071 3.32428 3.42546 3.48800 3.50020 3.88839 4.01382 4.55164 4.83589 5.06599 5.15423 5.18301 5.27937 5.29103 5.37704 5.50312 5.51999 5.62392 5.70539 5.74957 5.81964 5.94027 6.04774 6.08662 6.14278 6.26977 6.29131 6.35865 6.51004 6.58290 6.67603 6.94161 7.27389 7.36431 7.69447 7.73274 7.84806 8.23250 8.41845 8.93574 9.26829 9.90157 10.37214 11.36940 Molecular weight = 311.14amu Principal moments of inertia in cm(-1) A = 0.013493 B = 0.003560 C = 0.003057 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2074.711479 B = 7864.185489 C = 9157.277878 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C 0.054 3.946 3 N -0.462 5.462 4 C 0.082 3.918 5 C -0.027 4.027 6 C -0.131 4.131 7 C 0.519 3.481 8 O -0.557 6.557 9 N -0.699 5.699 10 C 0.116 3.884 11 H 0.084 0.916 12 C -0.158 4.158 13 C 0.143 3.857 14 N -0.597 5.597 15 C 0.162 3.838 16 C -0.257 4.257 17 H 0.069 0.931 18 C 0.005 3.995 19 N -0.903 5.903 20 Si 0.902 3.098 21 H -0.289 1.289 22 H -0.292 1.292 23 H -0.281 1.281 24 C -0.262 4.262 25 S 0.093 5.907 26 H 0.087 0.913 27 H 0.079 0.921 28 H 0.092 0.908 29 H 0.084 0.916 30 H 0.090 0.910 31 H 0.104 0.896 32 H 0.082 0.918 33 H 0.394 0.606 34 H 0.059 0.941 35 H 0.050 0.950 36 H 0.048 0.952 37 H 0.058 0.942 38 H 0.041 0.959 39 H 0.032 0.968 40 H 0.042 0.958 41 H -0.006 1.006 42 H 0.251 0.749 43 H 0.176 0.824 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.279 -17.918 -4.339 18.438 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.224 4.224 3 N -0.177 5.177 4 C -0.050 4.050 5 C -0.067 4.067 6 C -0.171 4.171 7 C 0.305 3.695 8 O -0.436 6.436 9 N -0.348 5.348 10 C 0.009 3.991 11 H 0.102 0.898 12 C -0.217 4.217 13 C 0.015 3.985 14 N -0.319 5.319 15 C 0.017 3.983 16 C -0.386 4.386 17 H 0.086 0.914 18 C -0.194 4.194 19 N -0.548 5.548 20 Si 0.733 3.267 21 H -0.216 1.216 22 H -0.218 1.218 23 H -0.206 1.206 24 C -0.400 4.400 25 S 0.347 5.653 26 H 0.105 0.895 27 H 0.098 0.902 28 H 0.110 0.890 29 H 0.103 0.897 30 H 0.109 0.891 31 H 0.122 0.878 32 H 0.101 0.899 33 H 0.228 0.772 34 H 0.078 0.922 35 H 0.070 0.930 36 H 0.067 0.933 37 H 0.076 0.924 38 H 0.059 0.941 39 H 0.050 0.950 40 H 0.061 0.939 41 H 0.013 0.987 42 H 0.061 0.939 43 H 0.194 0.806 Dipole moment (debyes) X Y Z Total from point charges 0.243 -18.431 -3.630 18.787 hybrid contribution 0.033 1.320 0.447 1.394 sum 0.276 -17.111 -3.183 17.407 Atomic orbital electron populations 1.20464 0.85169 1.04275 1.03995 1.27102 1.01807 0.90626 1.02896 1.66126 1.04614 1.31304 1.15702 1.20415 0.90116 0.94338 1.00109 1.19925 0.95182 0.91699 0.99917 1.21522 1.01097 0.95284 0.99229 1.20384 0.84644 0.83421 0.81036 1.90633 1.38118 1.77573 1.37303 1.45785 1.34643 1.24325 1.30055 1.21841 0.87617 0.87602 1.02076 0.89762 1.22147 0.98255 1.01366 0.99958 1.21182 0.88905 0.94082 0.94371 1.43913 1.00229 1.50373 1.37423 1.20843 0.88338 0.97847 0.91261 1.19177 1.05414 1.09353 1.04675 0.91368 1.24929 0.99289 0.97382 0.97791 1.70065 1.16243 1.28436 1.40016 0.86306 0.77848 0.82345 0.80240 1.21573 1.21830 1.20620 1.26792 1.02883 0.95582 1.14770 1.83845 0.98526 1.13454 1.69510 0.89487 0.90249 0.88967 0.89721 0.89123 0.87762 0.89937 0.77162 0.92222 0.93041 0.93296 0.92404 0.94089 0.94993 0.93877 0.98703 0.93850 0.80631 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.65 10.46 36.00 0.38 -0.28 16 2 C 0.05 0.64 7.39 -13.46 -0.10 0.54 16 3 N -0.46 -6.83 10.34 -8.06 -0.08 -6.91 16 4 C 0.08 1.13 6.08 -84.23 -0.51 0.62 16 5 C -0.03 -0.40 5.00 -27.88 -0.14 -0.54 16 6 C -0.13 -2.06 5.60 -27.88 -0.16 -2.22 16 7 C 0.52 9.96 7.79 -10.99 -0.09 9.87 16 8 O -0.56 -12.45 15.64 5.55 0.09 -12.37 16 9 N -0.70 -12.96 4.42 -53.80 -0.24 -13.20 16 10 C 0.12 2.22 2.88 -67.93 -0.20 2.03 16 11 H 0.08 1.96 7.58 -51.93 -0.39 1.56 16 12 C -0.16 -2.44 9.48 37.16 0.35 -2.08 16 13 C 0.14 2.81 5.33 -4.04 -0.02 2.79 16 14 N -0.60 -14.54 2.78 -181.12 -0.50 -15.05 16 15 C 0.16 3.80 7.60 59.85 0.45 4.26 16 16 C -0.26 -7.06 9.68 -15.06 -0.15 -7.21 16 17 H 0.07 1.85 7.86 -52.49 -0.41 1.44 16 18 C 0.00 0.13 5.06 -17.43 -0.09 0.04 16 19 N -0.90 -26.34 10.67 55.49 0.59 -25.75 16 20 Si 0.90 22.36 29.58 -169.99 -5.03 17.34 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 23 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 24 C -0.26 -2.96 11.07 29.12 0.32 -2.64 16 25 S 0.09 0.90 23.18 -107.50 -2.49 -1.59 16 26 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 27 H 0.08 0.47 8.14 -51.93 -0.42 0.05 16 28 H 0.09 0.83 8.14 -51.93 -0.42 0.40 16 29 H 0.08 1.15 7.98 -51.93 -0.41 0.74 16 30 H 0.09 1.55 8.10 -51.93 -0.42 1.13 16 31 H 0.10 1.81 8.08 -51.93 -0.42 1.39 16 32 H 0.08 1.09 8.14 -51.92 -0.42 0.67 16 33 H 0.39 6.76 7.18 -40.82 -0.29 6.47 16 34 H 0.06 0.83 8.14 -51.93 -0.42 0.41 16 35 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 36 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.06 1.11 8.03 -51.93 -0.42 0.70 16 38 H 0.04 0.71 7.86 -51.93 -0.41 0.31 16 39 H 0.03 0.80 6.97 -51.93 -0.36 0.44 16 40 H 0.04 1.12 7.22 -51.93 -0.37 0.74 16 41 H -0.01 -0.11 7.83 -51.93 -0.41 -0.52 16 42 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 43 H 0.18 1.57 8.06 -52.49 -0.42 1.14 16 LS Contribution 369.42 15.07 5.57 5.57 Total: -1.00 -33.19 369.42 -8.88 -42.06 By element: Atomic # 1 Polarization: 11.54 SS G_CDS: -6.84 Total: 4.70 kcal Atomic # 6 Polarization: 5.12 SS G_CDS: 0.06 Total: 5.19 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.23 Total: -60.90 kcal Atomic # 8 Polarization: -12.45 SS G_CDS: 0.09 Total: -12.37 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.34 kcal Atomic # 16 Polarization: 0.90 SS G_CDS: -2.49 Total: -1.59 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -33.19 -8.88 -42.06 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754326015.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.950 kcal (2) G-P(sol) polarization free energy of solvation -33.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.765 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.876 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.061 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.61 seconds